Gspi031641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:4294552-4299324[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 5.1e-05 0.0036 18.7 2.8 1 23 10 32 10 32 0.99
2 20 1.9e-05 0.0014 20.0 4.8 1 23 38 61 38 61 0.97
3 20 1.2e-05 0.00082 20.7 2.8 1 23 67 89 67 89 0.99
4 20 0.0025 0.18 13.4 5.2 1 23 95 117 95 117 0.99
5 20 7.2e-05 0.0051 18.2 3.7 1 23 123 145 123 145 0.98
6 20 0.00093 0.065 14.7 9.9 1 23 151 173 151 173 0.99
7 20 0.0002 0.014 16.8 1.9 1 23 179 201 179 201 0.99
8 20 5.7e-06 0.0004 21.7 4.0 1 23 207 229 207 229 0.98
9 20 2.1e-05 0.0015 19.9 6.5 1 23 235 257 235 257 0.99
10 20 0.69 49 5.7 1.4 1 23 368 390 368 390 0.96
11 20 8.5e-07 6e-05 24.3 3.6 1 23 396 418 396 418 0.98
12 20 0.00055 0.039 15.5 0.8 1 23 425 447 425 447 0.98
13 20 1.2e-05 0.00085 20.7 0.4 1 23 453 475 453 475 0.99
14 20 0.0002 0.014 16.8 1.7 1 23 482 504 482 504 0.97
15 20 1.3e-06 8.9e-05 23.8 3.4 1 23 510 532 510 532 0.99
16 20 5.6e-06 0.0004 21.7 5.2 2 23 539 560 538 560 0.97
17 20 0.00066 0.047 15.2 4.7 1 23 566 588 566 588 0.96
18 20 0.0028 0.2 13.2 4.1 1 21 594 614 594 616 0.94
19 20 0.023 1.6 10.3 0.3 2 23 640 661 639 661 0.95
20 20 1.4 97 4.8 0.5 1 20 667 691 667 693 0.74

Sequence Information

Coding Sequence
ATGGAAGTACACAACGACGAACTAAagtacaaatgtgaaatttgcgacaagTGCTTCGCGATGAAACAACGTCTATCGCGACACGTCAAAATACACACCAGCCAAAGAAACTTTAAATGCGTAATTTGCGGCAAATGCTTCACCACGAAACATTACATGTTGGATCACATGAGGGCGCAACACATCGGCGAAGGAAACTATCAATGTGTAACTTGCGGCAAATGCTTCACGACGAAAAGGACCCTCGCCGGCCACGTGAAAACGCACACTGTCGAAcgtaattacaaatgtgaatttTGCAAGAAGTACTTCACGACCAGACGTTACATGTTGGAACACACGAAAACGCACAACGGCGAAGGAAATTACAACTGTAgtgtttgcaataaattcttcaCGATAAAAAGACACCTGACGGCCCACGTGAAGACGCACGCCGGCGAACGAAACTATAAGTGCGAAACGTGCCATAAATGCTTCGCGACTAAACATTACATGTTGAAGCACGTGAAAACGCATACGGGTGATggtaattacaaatgtgaaatttgcaacaaatggtGCACGACGAAATCGAATCTCGCCGGCCACGTAAAGACGCACACCGGTGAAAGAGATCataagtgcgaaatttgcgaaaAGCGCTTCACGACGAAAAGTTATATGTTGGAGCACATGAAAACGCACAGCGGAGAAGCAAGTTTTAAGTGTGAGATTTGTAACAAATGCTTCGTGACGATGAAACATCTATCGAGACATGTGAAAACACACACTGGAAAAAATTTATTGGATCACATGAAAATTCATGCCGACgaacaaaattacaaatgcaaacttTATAGGAAATCGACGTGGAACGAGAGAAATTTATTGCAGCGCATGAAAACAATAAGAAAAGTGTTTTTGGAACATTTGAAGACGCATCCTGAAGAAAGCAAAGAGTCTTTTCCgaatttttcatgtattgtGCCGACAACTACGACGATAGGATTTGGCGACATTAATATACCGTCGATTAAGGAAAAGATTGGGGTGTTATTAAAGAACGACAATTTTGAGACAAACGATGAACACGTGAAGGCGCACACCGGCGAAGGCAACCACAAATGCGAAACGTGCAACAAATGGTTCACCGCGAAACTGTCAATGCTGGAGCACGTTAAAGTGCACACGGGCGAACGAAaccacaaatgcgaaatttgcgataAACGCACCACGTCGAAAAGTAATCTGTCCAAACACATGAAAGTCCACACCGGcgaagaaagaaattacaaatgtcaaatttgcaaCGAACGCTTCCCGACGAGAAAGAGCGTGTTGACGCACGAAGAAACGCACGTCGAAGAACGCAACTACACGTGCGAAGTTTGCGACGCGCGTTTTGCGACGAGGAGAAACCTCGTTGTCCACACGAAGACCCACGGGCACGGTGAACGAAATCatgaatgtgaaatttgcgagaAACGTTTCACGACGAAAAACTCTATGTTGCTGCACGTTAAAATTCACGCCGGTGAACGGaactataaatgtgaaatttgcgacaaatgcttcaTGACGAGGACCAATCTCACCGCTCACGTGAAGCGGCACAACCGCGAGAGAAACTTGAAATGTGAATTTTGCGGCAAGTGCTTCACAACAAGACAATATTTATCGACACACATGAAGACACACACGCAAGAGAAAATTTTCAAGTGCAAGACTTGCAATAAGGGCTTCGCTACGAAACAACATCTTTCGCAACACGATAGAACACACGGCGGAgaaaaaagatttaaatgcaaagTTTGCGATAAACGCTTTGTGTCAAAGTATTATATGTTGGTGCACGTTAAGTGTCACGATGGGAAAGCAACTTTAAAATGTGAACGCCTAACAAAACACATCAAATCGCAcagcgaaaaaagaaagaaatgcgAAATTTGTTCCAAGCAGTTAACGATGAAAGAAAATCTATTGGACCATGTTGAAGCTCACAATCACGAAACAagttacaaatgtgaaatttgcagccaggattttgaaaaaatttgttTTCCAAATGTTCCAAATTTGGAAACACACACATTGACAACTGTAACAGAAGAAATCAGCGACCCGATGATTAAAGAAGAGGCTGGATTCATAAGAGACAGCAATGatatagaaataaaacaggCAATAGTTATAAATCAAAGTCGTACTGATACTGCCATTGAGGAAGACGAATCCAAACCAATTGAAATCTTAATCAAGGAAGAACGTGTAATGGACACGTCAGACGTCTAA
Protein Sequence
MEVHNDELKYKCEICDKCFAMKQRLSRHVKIHTSQRNFKCVICGKCFTTKHYMLDHMRAQHIGEGNYQCVTCGKCFTTKRTLAGHVKTHTVERNYKCEFCKKYFTTRRYMLEHTKTHNGEGNYNCSVCNKFFTIKRHLTAHVKTHAGERNYKCETCHKCFATKHYMLKHVKTHTGDGNYKCEICNKWCTTKSNLAGHVKTHTGERDHKCEICEKRFTTKSYMLEHMKTHSGEASFKCEICNKCFVTMKHLSRHVKTHTGKNLLDHMKIHADEQNYKCKLYRKSTWNERNLLQRMKTIRKVFLEHLKTHPEESKESFPNFSCIVPTTTTIGFGDINIPSIKEKIGVLLKNDNFETNDEHVKAHTGEGNHKCETCNKWFTAKLSMLEHVKVHTGERNHKCEICDKRTTSKSNLSKHMKVHTGEERNYKCQICNERFPTRKSVLTHEETHVEERNYTCEVCDARFATRRNLVVHTKTHGHGERNHECEICEKRFTTKNSMLLHVKIHAGERNYKCEICDKCFMTRTNLTAHVKRHNRERNLKCEFCGKCFTTRQYLSTHMKTHTQEKIFKCKTCNKGFATKQHLSQHDRTHGGEKRFKCKVCDKRFVSKYYMLVHVKCHDGKATLKCERLTKHIKSHSEKRKKCEICSKQLTMKENLLDHVEAHNHETSYKCEICSQDFEKICFPNVPNLETHTLTTVTEEISDPMIKEEAGFIRDSNDIEIKQAIVINQSRTDTAIEEDESKPIEILIKEERVMDTSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-