Gspi031291.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1735494-1738563[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 1.4e+02 4.2 6.8 1 23 52 74 52 74 0.96
2 20 0.0025 0.18 13.3 4.9 1 23 80 102 80 102 0.96
3 20 1.6e-05 0.0011 20.3 0.4 1 23 108 130 108 130 0.98
4 20 0.00069 0.049 15.1 0.9 1 23 136 158 136 158 0.98
5 20 4.6e-05 0.0033 18.8 6.3 1 23 164 186 164 186 0.99
6 20 0.0023 0.16 13.5 3.5 1 23 192 214 192 214 0.97
7 20 0.0018 0.13 13.8 8.6 1 23 220 242 220 242 0.98
8 20 1.8e-06 0.00013 23.2 3.4 1 23 248 270 248 270 0.99
9 20 0.013 0.94 11.1 5.6 1 23 276 298 276 298 0.98
10 20 0.44 31 6.3 4.4 1 21 431 451 431 453 0.92
11 20 0.00026 0.019 16.5 7.3 1 23 459 481 459 481 0.98
12 20 1.9e-05 0.0013 20.0 7.7 1 23 487 509 487 509 0.97
13 20 4.5e-05 0.0032 18.9 0.6 1 23 515 537 515 537 0.98
14 20 0.0003 0.021 16.3 2.4 1 23 543 565 543 565 0.98
15 20 0.00082 0.058 14.9 3.9 1 23 571 593 571 593 0.99
16 20 1.9e-08 1.3e-06 29.5 0.6 1 23 599 621 599 621 0.98
17 20 6.3e-05 0.0045 18.4 1.2 1 23 627 649 627 649 0.97
18 20 2.7e-05 0.0019 19.6 2.6 3 23 657 677 655 677 0.96
19 20 9.4e-05 0.0066 17.9 4.8 1 23 683 705 683 705 0.98
20 20 9.6e-05 0.0068 17.8 0.5 1 23 711 735 711 735 0.92

Sequence Information

Coding Sequence
ATGGAAAATCGGTTGGCGACACCCGACagcgaaaataatgaaaatgtcacCGTTCAGGACGTGAAACTCGAACCTACAGAACTCGTCATCGGCGATAACTGTATCGCagtgaaagaagaagaaattgcaGATAACAAGAAGCAACATGCGAGTCACCAATGCGAGATCTGCGCCAAGAGTTTTAAATGCAAGCGGTACAAGCTGACGCACATGAAGCTCCACACTGAAGAACGGCCACACATGTGCCGTATCTGCCCGAGGAGTTTTAAGCGCCGCGCTCACATGTTGATGCACAGGAAGTTGCACACCGACGGCGTTGATtacaaatgcgagatttgcgCCAGGAGTTTCATATTTCGGTCGGAGCTGCTCGTCCATATGAAGTTGCACAGCGACGAGAAGAACTACAAATGTGAGGTTTGTCCCAAGCGGTTCAAGTGGAAGCAGAACATGTTGTTGCACATGCAGCTGCACACCGACGAGTATAACTACAAGTGCGAGGTCTGTTTCAAGTGTTTCAAAACGCGGCAGAACATGTCGAAGCACATGCAGTCGCACAACGAGGAGCGGAGCCACGTGTGCGACGTTTGCTTCAAGGGGTTCAAGACCAGGCAGTATTTCTTGCAGCACATCAAACAGCATACAGAACAGAGGAACCACAAGTGCAAGGTTTGCTCCAAGTGCTTCAAGACGAAGAAGGATATATTCAAGCACGCCAAGACGCACACGACTGAAAGAAATTACCAATGTGAGATATGCTCGAAGAGGTTCAAAACCAACTACAATATGTCGAAGCACATTAAGCGACACACCAACGAACGGTATCACAAATGCGAGTTTTGCTTTGTGAGCTTCAAGCGGCGACGAACCATGTTGAAACATTTGAGATTACATGCCGACAAAGTTGGTAAGAAGCGTTCGATGGAAAAGTTGTCGAGTAAACGTCTTGATTCTCCAAAAGAACTAATTAAGGAGGAATGTGATGTGTTCATCAAGAAAGAAAATTTGGAGGTTGACGTTGACGTTAAACACGATATAATGGATGTCCGTTTAAGGaacgcaaatttaaatgaagccaATTGCATATTTCTCGAAGTGAAACCCGAACCAACCGAAATCGTCTCCTCGAGCCAGTCCAACGACGCAGATGTCGGAAATgcaaatttcgaatacaaaactGAACCGTCATCGCCTGTCCCCGtcgtaaatttcgtaaatttccCGAATCCGAGCTCGTTTGAGAAGATAGACCCCGATGGCGGTGCCGACCATTTAGTGTCCACGACAAATCACACGTGCGTGGTTTGTACCAAACGTTTTAGAACTAAAGGTATCATGGTGAAGCACATGAAGTGCCACTCCGACGAGAGGAATCACAAATGCGACGTGTGCCACAAGAGCTACAAGCGTCGCGACCACGTCATCCAACACATGAAGCTccacaccggcgaaagaaaccACGAGTGCGACGTCTGCGGGAAGTGCTTCAAGTCGCGCCACGAGCTGACCAAACACTTGAAATACCACACCGATGAGagaaactacaaatgcgacGTGTGCGCGAAGAGCTTCAAGATGAACGCGTTGCTGGCGCAGCACATGAAGTTCCACACCGACGAAAGAAATCACAAGTGCGACGTTTGCACCAAGGGGTTCAAGACACGGAACGAGGTCGTGCTCCACATGAAGCGGCACACCGACGAGAAGAACTACAAGTGCGAGCTGTGCACGAAGAGGTTCAAAATGAGGAACGAGGTCGTGCACCACATGAAGTCGCACACCGACGAGCGAAATTACGAATGCGACGTCTGCGGTAAAGATTTCAAGACGAGGAGTAATTTGGTGAAGCACATGAAGATACACAACGACGAGAGGAACCATGTGTGTGATGTTTGCGGGAAGGGTTTTAAGATGAGGAATGAGGTGGTGAAGCACATGAAGCGGCACACTGATGAAAGGAACGACAACTGCGAAATGTGCACGAAGCGTTTCAAGACACGGAAGGATTTGATGCAGCACATGAAGTATCACACCGATGAGCGGAACCACAAGTGTGAGGTTTGCGGTAAATGTTTTAAGACGAGGAAGGTGCTGTTGTGGCACGTGAAGCGTCACAACGATGAAAGGAACTACGCGTGTGACGTTTGCGCTAAAAGTTTCAAGACGCGGAATGAAATGGTGAGGCACATGAAACGGCCCACTCACATGGAGAAATATAGTGCACCAGTGGATGGAAAGGAAATGTTAGAGAATCACAAGTGA
Protein Sequence
MENRLATPDSENNENVTVQDVKLEPTELVIGDNCIAVKEEEIADNKKQHASHQCEICAKSFKCKRYKLTHMKLHTEERPHMCRICPRSFKRRAHMLMHRKLHTDGVDYKCEICARSFIFRSELLVHMKLHSDEKNYKCEVCPKRFKWKQNMLLHMQLHTDEYNYKCEVCFKCFKTRQNMSKHMQSHNEERSHVCDVCFKGFKTRQYFLQHIKQHTEQRNHKCKVCSKCFKTKKDIFKHAKTHTTERNYQCEICSKRFKTNYNMSKHIKRHTNERYHKCEFCFVSFKRRRTMLKHLRLHADKVGKKRSMEKLSSKRLDSPKELIKEECDVFIKKENLEVDVDVKHDIMDVRLRNANLNEANCIFLEVKPEPTEIVSSSQSNDADVGNANFEYKTEPSSPVPVVNFVNFPNPSSFEKIDPDGGADHLVSTTNHTCVVCTKRFRTKGIMVKHMKCHSDERNHKCDVCHKSYKRRDHVIQHMKLHTGERNHECDVCGKCFKSRHELTKHLKYHTDERNYKCDVCAKSFKMNALLAQHMKFHTDERNHKCDVCTKGFKTRNEVVLHMKRHTDEKNYKCELCTKRFKMRNEVVHHMKSHTDERNYECDVCGKDFKTRSNLVKHMKIHNDERNHVCDVCGKGFKMRNEVVKHMKRHTDERNDNCEMCTKRFKTRKDLMQHMKYHTDERNHKCEVCGKCFKTRKVLLWHVKRHNDERNYACDVCAKSFKTRNEMVRHMKRPTHMEKYSAPVDGKEMLENHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-