Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:4312120-4317523[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 4.8e-05 0.0034 18.8 1.8 1 23 14 36 14 36 0.98

2 21 0.013 0.94 11.1 4.8 1 21 42 62 42 64 0.93

3 21 1.3e-06 8.9e-05 23.7 1.0 1 23 70 92 70 92 0.99

4 21 0.0006 0.042 15.3 3.2 1 23 98 120 98 120 0.98

5 21 5.9e-05 0.0041 18.5 1.4 1 23 126 148 126 148 0.99

6 21 2.5e-05 0.0018 19.7 3.5 3 23 156 176 154 176 0.96

7 21 0.00034 0.024 16.1 1.8 1 20 182 201 182 202 0.97

8 21 0.00026 0.018 16.5 2.5 1 23 210 232 210 232 0.98

9 21 0.00016 0.012 17.1 2.5 1 23 238 260 238 260 0.96

10 21 0.0011 0.074 14.6 6.3 1 23 446 468 446 468 0.98

11 21 0.0024 0.17 13.4 4.9 1 21 474 494 474 496 0.96

12 21 7.1e-06 0.0005 21.4 4.8 1 23 502 524 502 524 0.98

13 21 4.8e-05 0.0034 18.8 4.0 1 23 530 552 530 552 0.99

14 21 0.0012 0.081 14.4 2.6 1 23 558 580 558 580 0.98

15 21 0.00034 0.024 16.1 4.7 1 23 586 608 586 608 0.97

16 21 0.042 3 9.5 6.2 1 21 614 634 614 636 0.93

17 21 0.00011 0.0075 17.7 1.5 3 23 644 664 643 664 0.98

18 21 8.2e-05 0.0058 18.0 1.6 1 23 670 692 670 692 0.97

19 21 0.0012 0.085 14.4 5.5 1 21 698 718 698 720 0.95

20 21 0.00039 0.027 15.9 4.9 1 23 726 748 726 748 0.97

21 21 0.0037 0.26 12.8 0.4 2 23 932 953 931 953 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	4.8e-05	0.0034	18.8	1.8	1	23	14	36	14	36	0.98
2	21	0.013	0.94	11.1	4.8	1	21	42	62	42	64	0.93
3	21	1.3e-06	8.9e-05	23.7	1.0	1	23	70	92	70	92	0.99
4	21	0.0006	0.042	15.3	3.2	1	23	98	120	98	120	0.98
5	21	5.9e-05	0.0041	18.5	1.4	1	23	126	148	126	148	0.99
6	21	2.5e-05	0.0018	19.7	3.5	3	23	156	176	154	176	0.96
7	21	0.00034	0.024	16.1	1.8	1	20	182	201	182	202	0.97
8	21	0.00026	0.018	16.5	2.5	1	23	210	232	210	232	0.98
9	21	0.00016	0.012	17.1	2.5	1	23	238	260	238	260	0.96
10	21	0.0011	0.074	14.6	6.3	1	23	446	468	446	468	0.98
11	21	0.0024	0.17	13.4	4.9	1	21	474	494	474	496	0.96
12	21	7.1e-06	0.0005	21.4	4.8	1	23	502	524	502	524	0.98
13	21	4.8e-05	0.0034	18.8	4.0	1	23	530	552	530	552	0.99
14	21	0.0012	0.081	14.4	2.6	1	23	558	580	558	580	0.98
15	21	0.00034	0.024	16.1	4.7	1	23	586	608	586	608	0.97
16	21	0.042	3	9.5	6.2	1	21	614	634	614	636	0.93
17	21	0.00011	0.0075	17.7	1.5	3	23	644	664	643	664	0.98
18	21	8.2e-05	0.0058	18.0	1.6	1	23	670	692	670	692	0.97
19	21	0.0012	0.085	14.4	5.5	1	21	698	718	698	720	0.95
20	21	0.00039	0.027	15.9	4.9	1	23	726	748	726	748	0.97
21	21	0.0037	0.26	12.8	0.4	2	23	932	953	931	953	0.97

Sequence Information

Coding Sequence: ATGCTGGAGCACATGATAGTTCACTCCGGCGAGCGAAAccacaaatgcgacgtttgcgcCAAAAGCTTCAAAGCACGAAGCAACCTAGCGCAGCACCTCAAATCTCACACCGCCGAACGTAAACACAAATGCAATATTTGCGCCAAACGCTTCAAAACGAAAGGCGACGTCACCAAGCACGCCAAATGccacaccggcgaaagaaattacaaatgtgacgTGTGCCCGAAGGGCTTCAAAACGCGAAACGAACTGATGATGCACATGAAACGACACACGGACGAGAAAACGCACAAGTGCGACGTCTGCACGATGACGTTCAAGAAGAGATACGAAGTGGTGCGTCACATGCTGCGCCACACCGACGAGAAGAATTACAAGTGCGACGAGTGCGCGGATAGTTTCAAGTCGAAGAACGAGCTGATGCGCCACATGAAACGTCACACCGACGTTCGGGACCAGCACTGCGACGTTTGCACTAAGAGTTTTAAGACGAGGAGCTATTTGGCGCAGCACATGAAATACCACACCGATCAGAGGAACTACAAGTGCGACGTTTGCTCGAAAAGTTTTAAGACTCGGTGCAATATGATGACGCACATCGTGTGTCACTCTGACGAAAGGAATTACAAATGCGATATTTGCACCAAGAGTTTTAAAACGCGGACGGCTGTCGGCAAGCACAGGAAGTATCACACTGGGGAGAAAAACCACCAGTGCGACATTTGCGGCAAGAGTTTTAAAACGAGAAGGGTTTTAGTGCAGCATGAGAAGTTTCACgtggataaaaataatttccagaATTGTACAGAACAGACTTGTAAGAAAATAAGTCAGTGTCACAAAGAAATTGATGAAGACGACTCTGAATTGACACACAAAAACGCTTTAAAGTCAGAACAATTCTTTATTGAGGAGTACCACATGAATGTAAAAGAAGAAAAGTCGGAGATGGTCATTACTGATGGCAAAATGGAAACTAAATCTGCAATGACCACAAACTATTCCAATGCGACATTACTCGACGTAAAACCAGAACcaactgaaattatttacatgcCAGAGTCGCACTATGTATCTTCAAATCTCAAGAGTGAAAACTTAGCCGAcagtgaatttaaaaatgaaatgtcgTCTATCAGGATATCAACAGATGTAAAAATGGAAGATACGATAGAGAATTTCTTTAAAGATCACAAGACtgtttcgaatataaatatcgatAATTTTAACTCTACTCCTCCATATAATCTGAATAACGGTAACAGTGATGTTACCTTGAATACAAATTGCTTAATTAACGAGCAAAAGAAAATTTGTGAGAACGAAACAAACTACACATGTTACATATGCTCcaaaagttttaaaagaaaagcCTGCATGGCTAAGCACATACAACACCACACGAACGAGAGAAACTACAAATGCGATCTTTGCACGAAAAGCTTCAAAACGAGAAGTGACACCGTGCAGCACATGAAATGTCACAGCGGCGAACGAAACCACAAATGCGACCTGTGCGCCAAACGTTTCAAAACGAGGAGCGAATTGACGAAGCACATGAGATACCACTCCGTCGAGCGAAACTACAAGTGTCACATCTGCGCCAAGAGTTACAAAAGGAAAGACTACGTGCTGCGACACATAAGGTACCACACCGCcgaaaaaatccacaaatgcgACGCGTGCACGAAGAGGTTTAAGACGCGAGGCGAAGCCGTGCAGCACATGAAAACCCACAGTGACGAGAGAAAccacaaatgtgaaatatgcTCGAAGTGCTTCAAGACGAAGGCGGAAGTGGAGAACCACGTGAAGTATCACTCCGACGAGAGGAACCACAAGTGCGAGATGTGCACGAAGACGTTTAAAACGCGCGGCGGCATGACGCAGCACAAGAAGTGCCACACGAACGTGAGGAATCACGGGTGCGGTGTGTGCAGTAAAAGTTTCAAAACGAGGAGCGACATGAAGAAGCACGAGAGGTATCACACTGCTGAGCGAGTCCACGAGTGCGAGGATTGCGCTAAGAATTTCAAAACGAGGAGTAGTTTGCTGAATCACGTGAAGTGGCACACTAAGGAGAAAAaccacaaatgcgaaatttgcaccAAGAGTTTTAAAAAGAAGAGTCAGGTCGTGGAACACATGAGGTGTCACACGAACGAGAGGAACCACAACTGCAGTTTTTGTACGAAGAATTTTAAAACGAGAAGCGACGTGCTGCGACATATTAAAACTCATAGGGAGACATTCGATTTTCAGAATCACGAAGATATAGAACGACGCTATAAGACGATGTTTGAAAATCACGAGGAAAATTCTGTGGACAAATTCTTGTATCACGATGAAGCTCGAAAGCAGAGACAATCTAATGAGGAAGAGTGCAAAGTCtacataaaagaagaaaatttcgaACTGGACTTTAAAAGTGTAAAACCTGAACCAACCGAACTAACAACCCCCGTGTCAACCGCCAACCTGCCAAATTGTGCCGCATATTTTCGTGTCGAAGTCGACCACAGGAATGTCCCCACGTTGAAAGAAGTGAAATGCACAACGTCTTCTACACTGACAACAGACGTACAAACCATTTCAAACCCTGAAATTCCACAAAATGGCATCAAAATTAAGTTGGAGCTCGATGATTTTTTCGACCCCCCAAGCAGCGACAAAAATCCTGGCGACCAAGATATCGCAAGTGAAAGTCGTCGTCTTGCAGAGATGTACCAAATCAAAGAAAACACTCACCGCGTACTTTACACGACAAAAGCCAACGACACTTACAAAAGTTACTGTGAAATTTGCATGAAAGGCTTTTCAAGAAAAGACAGTCTGCCGCGACACCTGAAAATACACTACAACAATAGAAACAAACGCTTCGCATTGAACGAACAGATGATCAATCGCATGAAGAAGCACGGGGACGGCGTCTCCAGAAATGCTCACGTGGCGTACAGAGCATTGTCAAGATTGAAAAGGAATTGTGTGTAA
Protein Sequence: MLEHMIVHSGERNHKCDVCAKSFKARSNLAQHLKSHTAERKHKCNICAKRFKTKGDVTKHAKCHTGERNYKCDVCPKGFKTRNELMMHMKRHTDEKTHKCDVCTMTFKKRYEVVRHMLRHTDEKNYKCDECADSFKSKNELMRHMKRHTDVRDQHCDVCTKSFKTRSYLAQHMKYHTDQRNYKCDVCSKSFKTRCNMMTHIVCHSDERNYKCDICTKSFKTRTAVGKHRKYHTGEKNHQCDICGKSFKTRRVLVQHEKFHVDKNNFQNCTEQTCKKISQCHKEIDEDDSELTHKNALKSEQFFIEEYHMNVKEEKSEMVITDGKMETKSAMTTNYSNATLLDVKPEPTEIIYMPESHYVSSNLKSENLADSEFKNEMSSIRISTDVKMEDTIENFFKDHKTVSNINIDNFNSTPPYNLNNGNSDVTLNTNCLINEQKKICENETNYTCYICSKSFKRKACMAKHIQHHTNERNYKCDLCTKSFKTRSDTVQHMKCHSGERNHKCDLCAKRFKTRSELTKHMRYHSVERNYKCHICAKSYKRKDYVLRHIRYHTAEKIHKCDACTKRFKTRGEAVQHMKTHSDERNHKCEICSKCFKTKAEVENHVKYHSDERNHKCEMCTKTFKTRGGMTQHKKCHTNVRNHGCGVCSKSFKTRSDMKKHERYHTAERVHECEDCAKNFKTRSSLLNHVKWHTKEKNHKCEICTKSFKKKSQVVEHMRCHTNERNHNCSFCTKNFKTRSDVLRHIKTHRETFDFQNHEDIERRYKTMFENHEENSVDKFLYHDEARKQRQSNEEECKVYIKEENFELDFKSVKPEPTELTTPVSTANLPNCAAYFRVEVDHRNVPTLKEVKCTTSSTLTTDVQTISNPEIPQNGIKIKLELDDFFDPPSSDKNPGDQDIASESRRLAEMYQIKENTHRVLYTTKANDTYKSYCEICMKGFSRKDSLPRHLKIHYNNRNKRFALNEQMINRMKKHGDGVSRNAHVAYRALSRLKRNCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -