Gspi031603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3956020-3959781[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00074 0.052 15.0 1.6 2 23 17 38 16 38 0.97
2 17 8.7e-05 0.0061 18.0 5.3 1 23 44 66 44 66 0.97
3 17 0.0026 0.19 13.3 4.2 1 23 72 94 72 94 0.97
4 17 2.6e-05 0.0019 19.6 1.9 1 23 100 122 100 122 0.98
5 17 1.7e-05 0.0012 20.2 1.7 1 23 128 150 128 150 0.98
6 17 0.00015 0.011 17.2 5.9 1 23 156 178 156 178 0.99
7 17 1e-05 0.00074 20.9 3.3 1 23 184 206 184 206 0.99
8 17 0.0052 0.37 12.4 4.2 1 23 212 234 212 234 0.98
9 17 1.7 1.2e+02 4.5 1.3 2 15 452 465 451 466 0.90
10 17 2.4e-05 0.0017 19.7 2.7 1 23 479 501 479 501 0.98
11 17 2.5e-05 0.0018 19.7 3.5 1 23 507 529 507 529 0.99
12 17 2.5e-06 0.00018 22.8 2.6 1 23 535 557 535 557 0.99
13 17 4.9e-05 0.0034 18.8 5.3 1 23 563 585 563 585 0.97
14 17 3.5e-06 0.00025 22.3 0.9 1 23 591 613 591 613 0.99
15 17 5.1e-06 0.00036 21.8 0.4 1 23 619 641 619 641 0.98
16 17 4.7e-08 3.3e-06 28.3 4.5 1 23 647 669 647 669 0.99
17 17 1.2e-07 8.7e-06 26.9 3.2 1 23 675 697 675 697 0.99

Sequence Information

Coding Sequence
ATGGAACCCAGCGACGACCAAGATGCAAGTGATTTTGAACTGTTCAAACCGTGCCGAATTTGCGACAAGTGGTTCAGGTCGAAGCAAAGCCTGTCGTATCACATGAaaacgcacaccggcgaaaaaAACCACAGATGCGAGATTTGCACGAAATGTTTCAAAACGAAACAGAGTCTGTCGAACCACCTGATAATACACAGCGGCGTgagaaattacaagtgcgacACGTGCACCAAGCGCTTCGTTAGAAAAGAACATCTGTCGTTTCACGTGAAAGTGCACACCGGCGAAAAAAATTTCAGGTGCGACGTTTGCGCCAAGTGCTTCATAACGAAAGGTGATCTGTTGAAACACACGAAAGTGCACACCGATCGAGAAAACTACGAGTGCGCGGTTTGCGCGAAATGCTTCACGACGAAGCAAAATCTGTCGAATCACTTACAGatacacaccggcgaaagaaactACAAGTGCACAATTTGCAGGAAGCGCTTCAGAACGAAACAGTGTCTGTTGAATCACGTGAAGATGCACAACGACGtgagaaattacaaatgtgcaATTTGCACCAAGTGCTTTATAACTAAGGGCGATCTGGTGAAACACACGAAGAAACACACCGACGTGGAAAATTACCGGTGTGAAATTTGTAACGGATGCTTCAAAACGAAGCAACGTCTCTTGACACACACGAAATTGCACGTTGGAAAAAGAAACGtttatgaaaataagaaaatggatAGAGAAGAAAATACCGAGGAAGAGACTTCACAAAGATATTTATGTAACGTGCAGAGCGTTGATGAAATTGAAGAGAAATTGGTTAAAGAGGAGATTGCTACGTTCATTAAATCAGAACATTTGGATATCGAACGTGATACCATAGAAAGTGAACCACCAACAGCTATAAATGATTGGTATATTGATGCTGCCATTATGGAAGACAAGCCAAAATCGACGGAAATTTGCGATGTACAACAAATACTGAACAAAAAACCGGAGACGAAATTCATAATCGTCGAAGTAAAACCCGAACCAACAGAATTCACAAACTTAACTTGTTATGGATATTCTCAAGTTCAAGCTAACGACAAATACGCACGAAGTGCTGTTACGGTAAAGAAAGAGGAAGATGTACCAATAAAACTCGATACTATTAGTGTGGCTCCAAATATTTCAAGCACTAGAATTGCCCCtaatgacataaaaattaagttgGATGTCAGTGACAACAACGATCCGTGCGTCAACAAGAAAGATACGAGCGATAATTGtagtaaaattaacaaaaagtcATTTGCATCGCCAATTGACTTGATGAATCGCATGATCCACCGAGTGGAACGGAACTGCACGtgcgaaatttgcacgaaaAGTTCCTCAACGGAATCAAACGCACCGACTCGGACGAAAATAAGCGCCGGAGAACGAAAccacaagtgcgaaatttgcgcgaAACGcttcaaaataaaagaaaacttatccaagcacatgaaaatacacaccggCGAGAAAAACTTCAAGTGCGAAGTTTGCAGCAAGTGCTTCACGCTGAAAGAGAACGTGTCGAGacacatgaaaatacacacgGCCGAAAGGAACTACAAGTGCGACGTCTGCGCGAAGTGcttcaaaatgaaagaaaacctGGCGaagcacatgaaaatacacacgGAAGAAAAGAGccacaagtgcgaaatttgcggcaAATGCTTCGCGACGGAACAACACCTGTCGAATCACGTGAAATtacacaccggtgaaagaaattacgagtgcgaaatttgcgccaAGCGCTTCACGACGAGGCAAAACGTATCGAAACACATGAGGATACACACGGACGGGAGAAATTTCACGTGTGAAGTTTGCACTAAATCTTACGTGACGAAAACCGATCTGGTGAAGCACATGGCGGTGCATACCGGCGAAAGGAATTACCAGTGCAAGATTTGCGGCAAGTGCTTCATAACGAAGAGAAATCTTACGAGGCACACGAGGATACACACCAGCGAAAGgaattacaagtgcgaaatttgcggtAAATGCTTCAAAACTAGAGAAAATCTATCGACTCACTTGAAAATACACGCTGGAAAAACAACTGTGTTTTTGGAAGAAAATGCAACACAACCATTACGAAAATTATGTGACGTACAGAACATtggcaaaattggaaaaagtttGATTAAAGAAGAGACGTCTGTAAAAAAAGAAGAGTTAGAGATTAACAATGGTAAGAATTACACCgcatttgcttaa
Protein Sequence
MEPSDDQDASDFELFKPCRICDKWFRSKQSLSYHMKTHTGEKNHRCEICTKCFKTKQSLSNHLIIHSGVRNYKCDTCTKRFVRKEHLSFHVKVHTGEKNFRCDVCAKCFITKGDLLKHTKVHTDRENYECAVCAKCFTTKQNLSNHLQIHTGERNYKCTICRKRFRTKQCLLNHVKMHNDVRNYKCAICTKCFITKGDLVKHTKKHTDVENYRCEICNGCFKTKQRLLTHTKLHVGKRNVYENKKMDREENTEEETSQRYLCNVQSVDEIEEKLVKEEIATFIKSEHLDIERDTIESEPPTAINDWYIDAAIMEDKPKSTEICDVQQILNKKPETKFIIVEVKPEPTEFTNLTCYGYSQVQANDKYARSAVTVKKEEDVPIKLDTISVAPNISSTRIAPNDIKIKLDVSDNNDPCVNKKDTSDNCSKINKKSFASPIDLMNRMIHRVERNCTCEICTKSSSTESNAPTRTKISAGERNHKCEICAKRFKIKENLSKHMKIHTGEKNFKCEVCSKCFTLKENVSRHMKIHTAERNYKCDVCAKCFKMKENLAKHMKIHTEEKSHKCEICGKCFATEQHLSNHVKLHTGERNYECEICAKRFTTRQNVSKHMRIHTDGRNFTCEVCTKSYVTKTDLVKHMAVHTGERNYQCKICGKCFITKRNLTRHTRIHTSERNYKCEICGKCFKTRENLSTHLKIHAGKTTVFLEENATQPLRKLCDVQNIGKIGKSLIKEETSVKKEELEINNGKNYTAFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-