Gspi031609.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3983068-3985531[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.8e-05 0.002 19.5 1.3 1 23 127 149 127 149 0.99
2 17 0.022 1.6 10.4 0.2 1 23 155 177 155 177 0.99
3 17 0.072 5.1 8.8 0.1 5 22 185 202 184 202 0.94
4 17 2.5e-06 0.00017 22.8 1.3 1 23 209 231 209 231 0.98
5 17 6.5e-06 0.00046 21.5 7.2 1 23 237 259 237 259 0.99
6 17 1.3e-05 0.0009 20.6 4.4 1 23 265 287 265 287 0.99
7 17 0.00052 0.037 15.5 2.5 1 23 293 315 293 315 0.97
8 17 9.9e-05 0.007 17.8 3.1 1 23 321 343 321 343 0.98
9 17 7.1e-07 5e-05 24.5 4.3 1 23 349 371 349 371 0.98
10 17 6.9e-06 0.00049 21.4 1.2 1 23 377 399 377 399 0.99
11 17 0.00014 0.01 17.3 2.9 1 23 405 427 405 427 0.99
12 17 5.4e-06 0.00038 21.8 2.8 2 23 434 455 433 455 0.97
13 17 1.5e-05 0.001 20.4 2.0 1 23 461 483 461 483 0.99
14 17 5.6e-08 4e-06 28.0 4.5 1 23 489 511 489 511 0.98
15 17 1e-05 0.00071 20.9 0.6 1 23 517 539 517 539 0.99
16 17 3e-05 0.0021 19.4 2.8 1 23 545 567 545 567 0.99
17 17 0.28 20 6.9 0.1 3 21 603 625 601 626 0.84

Sequence Information

Coding Sequence
ATGGAAACTGACATACACGACTCCAACTTCACAATCGGCAAAGTAAAACTGGAACCGATCGAATTTGTGGTCATGCCTCCGCAACCACCGCCTTGTGGATTGTTTCATGGACCTGATCGCAAAAAAGCAGAAAATGTTATGATAAAAACAGAGGAATTTGCTTCTGTTCTGGCGGGAGACATAAAACTCGATATTTCAAAAACAGAACTTGCAAGTAAGTTGGATCTCGGTGATGACAATGATTTGTTATACTCTTCATGTAGCAAGAAGGAAACCTGTGAAGGAGACGAAGATGCAAGTGAAAATTGTCAATCAAAAATGTTACGTATACCCGAAAAATCAATTAACTCGAAACGTTTCAAAACGTGGGAAAGAAcctacaagtgcgaaatttgcaccAAATGCTTCGACGTGAAAGCCGATCTTTTAGTTCACACGAAAATACACACTGGTGAAGCAAATTACAAATGTGCAATTTGCCTGAAACGCTCCGCAAGAAATGACAGTGTGCCGAGGCACATGAAAATACACGAAAGGAATTACAAGTGGGAAATTTGCGTCAAATGCTACATAACAAAAACTGGTCTAGTGAGACACATCAAAACGCGCAACGGCAATGGAGAgtacaagtgtgaaatttgcgccAAATACTTTAGGCAAAGCGACAATCTGTCGAATCACATGAAGCTGCACATGTGCGAAAGGAACTACAAGTGCCAAATTTGCACGAAATGCTTCAAAACGAAACAACACCTATCGGTccacatgaaaatacacaccggtgaaagaGATTACAAATGTAACGTCTGCACCAAGTGTTTCATAACGAAGCAAAAACTCTCGGCTCACATGACGACACACACCGGAAAGAGAAatcacaagtgcgaaatttgcatgAAGCGCTTCACGACCAGCAGCAGTCTGCTGATTCACTCGAAAATACACACCGGCGAAAAAAATTTCGAGTGCGAAGTTTGCACAAAACGCTTCGTAACGAAATGCGTCCTCCTGAAACACATGAAAATGCACACGGGCGAAAGAAACTACAAGTGCGAGATATGCACCAAATGCTTCAAGACGAGAAGCAATTTGTCCAGTCACATGTTGCTGCACACCGGCGAACGAACTTACAAGTGCGAATTCTGCAGCAAAAGCTTCGGCAGGAAGGCCAACGTGTTGATTCACATGAaaacgcacaccggcgaaaggaACTACAAATGCGACAGTTGCAGCAAGTGCTACATAACGAAAGGTTCCCTTTTGAAACATGTCAAAATACACACCTGCGACAAGAACATCCGGTGCGAAATTTGCGCGAAGTGTTTTAGGAGGAAAGAGAATCTGTCGAATCACATGAAGCTGCACACCGGCGAAAGGAATTACAAGTGCGAAGTTTGCACGAAATGCTATATAACAAAAACTGCTTTAGCGACACACATCAAAATGCACAACAGCGATGGAGAGTACACgtgtgaaatttgcgacaaatgcttTAAGAGGAAAGATAATCTGTCGAAACACATGAAGCTGCACACTGGCGATGGAAAgtacaagtgtgaaatttgcaccaAATGCTTCGGCGTCGAAGCCAATCTATTAAttcacatgaaaatacacaccggtGAAGGAAAgtacaaatgtcaaatttgccTGGAAAGCTTCATAATGAAACAACATCTCACGAAACACATGAAAGTGCACATAACGGCTACAAACGATATCGGATCTATCGCCAtggaagagaaaagaaaatccACAGAAAGAAAGAATTTTCTCAGGAGGGAGTCGTTGGTGAAACATAAGAAGTGCCGCACGAATGACAGGATTTGTACCAAGGGTTTTAAAATAAGGTACGGTTTGTTGAACCACATGATCAGTCGCTCTAATGAAAGAAATTACGAATGCAGTGTTTCTTTGGTGGTTCATTTGAAGAAACACGTAAATTTTGATGGGGATGATTCTATGGAAAAATGCGATGATGGAACTAGAATTAAAGCCGATGTATTTCAAAAACGGTCTATTTTAGATGATCTGAATATAAAGAAGGAAGATTTAAGAATGGACATTAAATGTGATGCAATAAAAAGTGATCCCTCGATGAACACCAACAACGACTTCTCTCTTCACAAAGTTAAAGCTGAAGCTATCGAATTTTTCGATATGTCGCAATTTGTTAAAacagaattcaaaatttaa
Protein Sequence
METDIHDSNFTIGKVKLEPIEFVVMPPQPPPCGLFHGPDRKKAENVMIKTEEFASVLAGDIKLDISKTELASKLDLGDDNDLLYSSCSKKETCEGDEDASENCQSKMLRIPEKSINSKRFKTWERTYKCEICTKCFDVKADLLVHTKIHTGEANYKCAICLKRSARNDSVPRHMKIHERNYKWEICVKCYITKTGLVRHIKTRNGNGEYKCEICAKYFRQSDNLSNHMKLHMCERNYKCQICTKCFKTKQHLSVHMKIHTGERDYKCNVCTKCFITKQKLSAHMTTHTGKRNHKCEICMKRFTTSSSLLIHSKIHTGEKNFECEVCTKRFVTKCVLLKHMKMHTGERNYKCEICTKCFKTRSNLSSHMLLHTGERTYKCEFCSKSFGRKANVLIHMKTHTGERNYKCDSCSKCYITKGSLLKHVKIHTCDKNIRCEICAKCFRRKENLSNHMKLHTGERNYKCEVCTKCYITKTALATHIKMHNSDGEYTCEICDKCFKRKDNLSKHMKLHTGDGKYKCEICTKCFGVEANLLIHMKIHTGEGKYKCQICLESFIMKQHLTKHMKVHITATNDIGSIAMEEKRKSTERKNFLRRESLVKHKKCRTNDRICTKGFKIRYGLLNHMISRSNERNYECSVSLVVHLKKHVNFDGDDSMEKCDDGTRIKADVFQKRSILDDLNIKKEDLRMDIKCDAIKSDPSMNTNNDFSLHKVKAEAIEFFDMSQFVKTEFKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-