Gspi029679.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390739.1:17277027-17278841[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.016 1.1 10.9 3.2 1 23 14 36 14 36 0.97
2 20 0.0023 0.16 13.5 5.4 1 23 42 64 42 64 0.98
3 20 1.4e-05 0.001 20.4 3.5 1 23 70 92 70 92 0.98
4 20 9.8e-06 0.00069 20.9 4.9 1 23 98 120 98 120 0.97
5 20 6.2e-06 0.00044 21.6 1.0 1 23 126 148 126 148 0.99
6 20 0.068 4.8 8.9 5.0 1 23 154 176 154 176 0.98
7 20 3.9e-05 0.0027 19.1 9.3 1 23 198 220 198 220 0.97
8 20 4.7e-05 0.0033 18.8 2.3 1 23 226 248 226 248 0.98
9 20 1.8e-05 0.0013 20.1 1.7 1 23 254 276 254 276 0.98
10 20 0.00024 0.017 16.6 5.1 1 23 282 305 282 305 0.97
11 20 6.6e-06 0.00047 21.5 0.4 1 23 311 333 311 333 0.98
12 20 3.3e-05 0.0024 19.3 0.9 1 23 339 361 339 361 0.97
13 20 6.2e-05 0.0044 18.4 0.2 1 23 366 388 366 388 0.99
14 20 1.5e-06 0.0001 23.5 1.0 1 23 394 416 394 416 0.99
15 20 0.00061 0.043 15.3 1.2 1 23 422 444 422 444 0.99
16 20 5.2e-05 0.0036 18.7 1.5 1 23 450 472 450 472 0.97
17 20 9.4e-06 0.00067 21.0 4.6 1 23 478 500 478 500 0.98
18 20 2.8e-06 0.0002 22.6 5.0 1 23 506 528 506 528 0.99
19 20 0.25 18 7.1 6.3 1 21 534 554 534 556 0.95
20 20 0.0044 0.31 12.6 1.7 1 23 562 584 562 584 0.96

Sequence Information

Coding Sequence
ATGCTGAAACACATGACGACGCACACCGGCGAACGAAACCACAGAtgcaaaatttgcataaaaagcTACAAAACAAGAGATGCCATGTTGAGGCATTTTGAGACGCACACCACCGAGAGAAACCACAAATGCAAGTTTTGCACGAAGCGGTTCAAGACGCGAGTTACCATGTTGGGTCACATGAGACTTCACACGGCGAACGGACGgcacaaatgcgaaatttgcagcAAGAGTTTCAGGACGAGGATCTACGTCGCGAAGCACATGAAAACGCACACATTCGAACGGAACCACAAGTGCGAAATATGCAGCAAGAGCTATAAACGGCGGTACCATCTAGTGAGGCACATGGCGCTGCATACGGCGGACGCCAAGTTCAAATGCGAGATGTGTGCGAAGCGGTTTAAAACGAACGAGGTTTTGATGGCTCATATGAAAACCCACGTTGAAAAAAAGAGGCACAAATGCGACATTTGCACGGAGACATTTAGATGGAAGAAGCACATGCTTTTACATCTGAAGAGTCACGACGTAGAGAAATATATCAAGTCCGAGACTTTCGATTTGAAACCGATTTTGATCGAACAAAATCACCAATGCAAAATTTGTAATAAGTGTTATAAAACGAGGAGTCATTTGTTAAGACATTTGAAAGAGCACTCGGCCGAAAGGAaccacaaatgcgaaatttgcgccaAGAGCTTCGTCATGCGGACGTATTTGCTGCGGCACATGCAGTCGCACGTCGTGGAACGAAATCACAAATGTGAGATTTGCACGAAGCCGTTTAAAACGCGAGGTAGTATGCTGGAGCACATGAAGATTCACACCGAAGAGAGGaaacacaaatgtgaaatttgcacgaaGACCTTCAAAGCTCGAAAACATTTGTTGGAGCACATTCGGAATTATCAcaccaaagaaaaaatatacgagTGTGGCATTTGCGGCAAGGGTTTTAAGACGAGGATCTACATGTTGAAGCACATGGAGAGGCACACCATCGagaaaaatcacaaatgcgaCATCTGCAGCAAGGGTTTCCGAACGCGCGCGGCTCTTTTGAAGCACGTGACTATTCACGCGGAAAAACGAtacaaatgcgagatttgcgCCAAGACTTTCGCCGCGAAATCCAACATGTTGGAGCACGTGAACACACACTCGACTGAAAAGAATTTCCAATGTGAAATTTGCTCGAAGCTGTTCAAAACGAGGCCGAATTTACTGAGACATATGGAAACGCACGCCACCGAACGAAAGTTCAAATGCGAGATTTGCATGAAGAGTTTCATATCGAACTACCGCATGTTGGAGCACATGAACACGCACTCGgcagaaagaaattacaaatgtgaaatttgcgataAGCTGTTTAAATCGAGGCCGAACATGACGAGACATTTCGAAAGTCACGCCGTCGAACGGAAGCATAAATGCGAGATTTGCACGAAGAGTTTCGTCACGAAACACAACTTCGTGGAGCACATGGAAACGCACTCGGCCGAACGAAATTACAAGTGCGAGGTTTGCCCCAAACAGTTCAGGACGAAACACAACATGTTCAGTCACATGAAAACGCACAGCGCCGAAAGAAAtcataaatgcgaaatttgcaccGGCATGTTCAAAACGAGGAAACATATGTTGATGCACATGAATTGTCACACTGATGAAAAAATACAtcaatgtgaaatttgcaatagaaGCTTTAAATGGAAGCGTAGTTTGTTGGGACACTTGCAATTACACTCTAAAGGAAGcgatcaaaaatacaaatttgactCGACGGCTTTAAATTCAGAATCTTCATGA
Protein Sequence
MLKHMTTHTGERNHRCKICIKSYKTRDAMLRHFETHTTERNHKCKFCTKRFKTRVTMLGHMRLHTANGRHKCEICSKSFRTRIYVAKHMKTHTFERNHKCEICSKSYKRRYHLVRHMALHTADAKFKCEMCAKRFKTNEVLMAHMKTHVEKKRHKCDICTETFRWKKHMLLHLKSHDVEKYIKSETFDLKPILIEQNHQCKICNKCYKTRSHLLRHLKEHSAERNHKCEICAKSFVMRTYLLRHMQSHVVERNHKCEICTKPFKTRGSMLEHMKIHTEERKHKCEICTKTFKARKHLLEHIRNYHTKEKIYECGICGKGFKTRIYMLKHMERHTIEKNHKCDICSKGFRTRAALLKHVTIHAEKRYKCEICAKTFAAKSNMLEHVNTHSTEKNFQCEICSKLFKTRPNLLRHMETHATERKFKCEICMKSFISNYRMLEHMNTHSAERNYKCEICDKLFKSRPNMTRHFESHAVERKHKCEICTKSFVTKHNFVEHMETHSAERNYKCEVCPKQFRTKHNMFSHMKTHSAERNHKCEICTGMFKTRKHMLMHMNCHTDEKIHQCEICNRSFKWKRSLLGHLQLHSKGSDQKYKFDSTALNSESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-