Gspi031598.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3935103-3937280[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00068 0.048 15.2 4.5 1 23 105 127 105 127 0.97
2 21 0.00019 0.013 16.9 1.4 1 23 133 155 133 155 0.98
3 21 2.9e-05 0.002 19.5 1.7 1 23 161 183 161 183 0.99
4 21 2e-05 0.0014 20.0 1.7 1 23 189 211 189 211 0.99
5 21 1.7e-06 0.00012 23.4 1.6 1 23 217 239 217 239 0.99
6 21 0.00014 0.01 17.3 1.6 1 23 245 267 245 267 0.98
7 21 5.7e-06 0.00041 21.7 2.2 1 23 273 295 273 295 0.99
8 21 0.15 10 7.8 0.4 1 23 301 323 301 323 0.78
9 21 6.1e-05 0.0043 18.5 5.1 1 23 329 351 329 351 0.98
10 21 3.8e-05 0.0027 19.1 3.3 1 23 357 379 357 379 0.98
11 21 0.00035 0.025 16.0 1.6 1 23 385 407 385 407 0.98
12 21 9.1e-06 0.00065 21.0 0.7 1 23 413 435 413 435 0.99
13 21 0.0011 0.078 14.5 1.8 1 23 441 463 441 463 0.94
14 21 0.00019 0.013 16.9 0.5 1 23 469 491 469 491 0.99
15 21 0.047 3.3 9.4 3.5 1 23 497 519 497 519 0.96
16 21 0.0087 0.62 11.7 2.1 1 23 525 547 525 547 0.92
17 21 0.0036 0.25 12.9 0.8 1 23 553 575 553 575 0.99
18 21 1.7e-05 0.0012 20.2 2.0 1 23 581 603 581 603 0.99
19 21 9e-06 0.00063 21.1 3.6 1 23 609 631 609 631 0.99
20 21 0.0063 0.44 12.1 4.2 1 21 637 657 637 658 0.94
21 21 0.0021 0.15 13.6 2.5 3 23 667 687 665 687 0.97

Sequence Information

Coding Sequence
ATGAAAACAGACGTGACAGATTCCAACTTCACGATCCCGGAAGTAAAACCCAAACCATTACAATTTATCACTTTAATCCCGAAACAAATCATAAACATAAAAGAAGAGGAACATGCCCATGAGTCTTCACCGTTACCGGAAATAAAACACATCGAGAcgtcatgtaatattttaaacgtaGGAATCGCCCGCGACGATATCAAAATTAAGTTGGATCTCGGCGACAACGTTGATTTGTCGAAGAAAACACCGGGCGAAAAAATTCATTCTTGCGACAATTATGTCAAAAGGACAATTAAAATTTGCTCGAGACACGTATGTGACatttgcgacaaatgcttcaGGACGAAACGAATCATGATGAatcacatgaaaatacacaccggtGATGGGCATTACGAATGTGAGACGTGCAACAAACGCTTCACGATAAAACGATATTTGTTGGAACACGTGAAAATGCACATCGGCGaacgaaattacaaatgcgatgTTTGCGGTAAACACTTCGCTAGAAAACAATACGTGCTGGAACACGCGAGAAcacacaccggtgaaagaaactacaagtgcgaaatttgcgataAATATTTCAGTGCGAGACGTAGTTTGAGGGAACATTTGAAAAGACACGTCGAAGATaggaattataaatgtgaaatttgcgccAAATCCTTCACAACGAAACTAAACCTGTCGAATCATTTGAAAACGCACACCAGCGAGAGAAActataaatgcgaaatttgcaataaatctttCGTGACGAAAGGATGCAAAGTGGCACACGTGAAAATACACACGGGCGAACGAAAGtacaaatgcgaagtttgcaataaattcttcaCAACGAAAGGAAACATGTTGGAACACACGAAAACGCACACCGCGGAAAGAAACTACAGTtgcgaaatttgcaagaaaCGCTTCGCGATTAAGCGAATTATGCTGCAGCACGTGAAAGCGCACACCAGCGAAAGAAACCACCGGTGCGAGATCTGCGGCAAATGCTTCGTGACGAGGCGCATGATGCTAAAACACGTGAAAACTCACACCGCCGAAAGGATCTACGAATGCGAAAGttgcgacaaatgcttcacTAGAAGAGAGAACATGTTGGTGCACACGAAGTCGCACACCGGCGAGAGAAACTACAAGTGCCACATCTGCGGCAAGTCTTTCATAATAAAACGGGTCATGCTGGACCACGTGAAgacgcacaccggcgagaaaaactacaaatgtgaaatttgcgacaaacgcTTCGCGAGGAAACAAGACATTTCGAAACACGTGATAACGCACACCGGCGAACGAaactacaagtgcgaaatttgcgacaaacgcTTCACAACCAAACGAATTACTCTGGAACACTTGAaaacgcacaccggcgaaaaaaattacaagtgcggAATCTGCACGAAACAATTCTCGACGAAAGGTGGCATGTTGGGACACGTGAAAACTCACTCCGGTGAAAGGAACCACGAATGCGAAATTTGTGCGAAGTGCTTCACCACAAAACGGATCATGTTGGAACACGTGAAGACGCACGCCGGCGAACGAAatcacaagtgcgaaatttgcacgaAGCGGTTCACAACTAAACAAATCATGCTGAGGCACTTGGAAGCGCACAGCGgcgaaagaaactacaaatgtgaaatttgctctAAGTGGTTCACGACGAAAGGAATTCTATCGAAACACGTGCAGACTCATACCGGAGACAGAAGttataaatgcgaaatttgcacgaaGGGGTTCACGACGAAACAAATTCTGTCGAGACACATGAAAACTCATACCGGCGAAAGAaactacaagtgcgaaatttgcagtAAACGCTTCACAACGAAACAGGATATGTCGAGACACACGAAGACGCATACCGGCGAAAGAAACTACAGGTGCGAaacttgcaacaaatgcttcacaatgAAACGATATATGTTGAAACACGCGAAAAGGAACTCCTGCGAAAGAACTTACggatgtgaaatttgcaaccgGTGttttggaacaaaaaaaaagcTGTTGGAACATAAGGAAACGCACACTGAAGTGAACCAGACGAAAGACATTTGTCAATTGGAGATTGAAAAACAATTCATTAAGCAACCGACTGTTACAAGTGTAAAGGAAGAAAAGTTGGAAATCGACAATGGTAAGTAa
Protein Sequence
MKTDVTDSNFTIPEVKPKPLQFITLIPKQIINIKEEEHAHESSPLPEIKHIETSCNILNVGIARDDIKIKLDLGDNVDLSKKTPGEKIHSCDNYVKRTIKICSRHVCDICDKCFRTKRIMMNHMKIHTGDGHYECETCNKRFTIKRYLLEHVKMHIGERNYKCDVCGKHFARKQYVLEHARTHTGERNYKCEICDKYFSARRSLREHLKRHVEDRNYKCEICAKSFTTKLNLSNHLKTHTSERNYKCEICNKSFVTKGCKVAHVKIHTGERKYKCEVCNKFFTTKGNMLEHTKTHTAERNYSCEICKKRFAIKRIMLQHVKAHTSERNHRCEICGKCFVTRRMMLKHVKTHTAERIYECESCDKCFTRRENMLVHTKSHTGERNYKCHICGKSFIIKRVMLDHVKTHTGEKNYKCEICDKRFARKQDISKHVITHTGERNYKCEICDKRFTTKRITLEHLKTHTGEKNYKCGICTKQFSTKGGMLGHVKTHSGERNHECEICAKCFTTKRIMLEHVKTHAGERNHKCEICTKRFTTKQIMLRHLEAHSGERNYKCEICSKWFTTKGILSKHVQTHTGDRSYKCEICTKGFTTKQILSRHMKTHTGERNYKCEICSKRFTTKQDMSRHTKTHTGERNYRCETCNKCFTMKRYMLKHAKRNSCERTYGCEICNRCFGTKKKLLEHKETHTEVNQTKDICQLEIEKQFIKQPTVTSVKEEKLEIDNGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-