Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390733.1:34131882-34133837[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-06 0.0001 23.6 1.4 1 23 175 197 175 197 0.98

2 12 1.2e-05 0.00083 20.7 2.7 1 23 203 225 203 225 0.97

3 12 5.4e-08 3.8e-06 28.1 2.0 3 23 233 253 231 253 0.96

4 12 1.1e-05 0.00075 20.8 0.4 1 23 259 281 259 281 0.97

5 12 4e-06 0.00028 22.2 0.4 1 23 287 309 287 309 0.97

6 12 0.00025 0.018 16.5 2.3 1 23 315 337 315 337 0.98

7 12 1.9e-08 1.3e-06 29.5 0.7 1 23 343 365 343 365 0.97

8 12 1.9e-06 0.00013 23.2 0.1 1 23 371 393 371 393 0.98

9 12 2.6e-07 1.8e-05 25.9 1.2 1 23 399 421 399 421 0.99

10 12 1.6e-07 1.1e-05 26.6 0.2 1 23 427 449 427 449 0.99

11 12 1.8e-06 0.00013 23.3 0.9 1 23 455 477 455 477 0.97

12 12 7.8e-07 5.5e-05 24.4 0.5 1 23 483 505 483 505 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-06	0.0001	23.6	1.4	1	23	175	197	175	197	0.98
2	12	1.2e-05	0.00083	20.7	2.7	1	23	203	225	203	225	0.97
3	12	5.4e-08	3.8e-06	28.1	2.0	3	23	233	253	231	253	0.96
4	12	1.1e-05	0.00075	20.8	0.4	1	23	259	281	259	281	0.97
5	12	4e-06	0.00028	22.2	0.4	1	23	287	309	287	309	0.97
6	12	0.00025	0.018	16.5	2.3	1	23	315	337	315	337	0.98
7	12	1.9e-08	1.3e-06	29.5	0.7	1	23	343	365	343	365	0.97
8	12	1.9e-06	0.00013	23.2	0.1	1	23	371	393	371	393	0.98
9	12	2.6e-07	1.8e-05	25.9	1.2	1	23	399	421	399	421	0.99
10	12	1.6e-07	1.1e-05	26.6	0.2	1	23	427	449	427	449	0.99
11	12	1.8e-06	0.00013	23.3	0.9	1	23	455	477	455	477	0.97
12	12	7.8e-07	5.5e-05	24.4	0.5	1	23	483	505	483	505	0.99

Sequence Information

Coding Sequence: atggcATTTGAAACTGCTGTACAAACGGAAAAAGTTTGTCGAACATGTTTATCAGAAGAAGGTGATATGCGTTCCGTATACAGTATTGATGAAAGTGTCGGTGAAACGGCtagattatttgaaatgttaatgTCTTGTGCCTCTGTACaggtaaTTGAAGGCGACGGTTTACCAAATCAAGTATGTTTACAATGCGTACATTACATTACCCGAGCATACTCTTTTAAGCAATTATGTGAACGATCTGATAGTACATTAAGACAACTTTTGGGTCGTCCGACGCAAACATTTTTAGAGCTTAAGCCGTACCCGCAGGCAATGGTTGAATTGGTTATGCCTGAACAAACGCAAACGCAAACACAAAGTACAGTAGAGCCAAAAATTGAGTTTCTAGATAATGAATTTCCAAGAATAGATACCTCAGATAGTGATAGTGGTAATACAATCCCTCAATTAGAAATATCAAAGTTCAAAAAGGAACCTAAGAAACGTAGGATAAAAGATGATACTGAACAACCTATATATCCTTGCGAAGAATGCACTCAATGTTTTACAACACTTAGTGAtttaaagGTTCATGCCAGAACACATCCAAAAATAACAAGACATATTTGTAAAGTTTGCAATCAAGGATTCGCAAGTGCCAGTACATTGTGTAGACATATGAAGGTTCACGATGGTGCAAAAAGACATTTATGTAATGAATGTGGAAAGGGATTTTCTCGATCGGATGACCTAACGAGACATTTAAGAACACATACCGGAGAAAAACCTTTTCCTTGTACAATATGTGGAAAATCATTTGCGCAGTCATTCAGGCTATTGGAACATAGGCGAGCTCATGctaatgaaaaaagtttcatatgTTCAGTTTGTGGCAAAGCATTCTCAAGATACACAAGCCTAGCGGCGCATAACAAGACGCACAGTGGAATTAAAAGTCATGAATGTGGTTTATGTGGCAAACGGTTATGTGGTTCAGGTTCTTTAACCATGCATATGAAAACTCATACAGGTGTAAAAGATCATATTTGTCCATATTGTGGAAAAGGATTTACCACACCTAGTAATCTCATCATTCATAAGAGAACACATACAgGTGAAAGACCATACGTATGCAACATATGTGGTAAAGGATTCCCCGATCCTTCAAGATTAACGGTACATTCACGATCACACAGCGGAGAGAAGCCATATGTATGTTCAGTTTGTGGGAGAGGCTGTGTCAGCTCTTCACAACTTAAGAAACACATGCGAATTCACACTGGAGAAAAACCTTACAGGTGTAACCTATGCCCCAAAGCCTTTCCCCGAAGTGAAGATTTAAGAATTCATATAAAAACTCATACAggTGATCGTAACCACATATGTGGTATTTGCAAGAAAGGTTTCTATCAAGCATCTACCTTAAAAGTACACATGAGGATACATACTGGTGAGAAACCTTACACGTGCAACATTTGTGATAAGGCGTTCTCTCAAACTGGTCCTTTATCAACCCACATGAAAACACACTGA
Protein Sequence: MAFETAVQTEKVCRTCLSEEGDMRSVYSIDESVGETARLFEMLMSCASVQVIEGDGLPNQVCLQCVHYITRAYSFKQLCERSDSTLRQLLGRPTQTFLELKPYPQAMVELVMPEQTQTQTQSTVEPKIEFLDNEFPRIDTSDSDSGNTIPQLEISKFKKEPKKRRIKDDTEQPIYPCEECTQCFTTLSDLKVHARTHPKITRHICKVCNQGFASASTLCRHMKVHDGAKRHLCNECGKGFSRSDDLTRHLRTHTGEKPFPCTICGKSFAQSFRLLEHRRAHANEKSFICSVCGKAFSRYTSLAAHNKTHSGIKSHECGLCGKRLCGSGSLTMHMKTHTGVKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCNICGKGFPDPSRLTVHSRSHSGEKPYVCSVCGRGCVSSSQLKKHMRIHTGEKPYRCNLCPKAFPRSEDLRIHIKTHTGDRNHICGICKKGFYQASTLKVHMRIHTGEKPYTCNICDKAFSQTGPLSTHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466605;
90% Identity: -
80% Identity: -