Gspi031294.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1740338-1742365[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.2e-05 0.0065 17.9 5.7 1 23 114 136 114 136 0.98
2 18 0.022 1.6 10.4 1.6 1 23 149 171 149 171 0.99
3 18 2.2e-05 0.0015 19.9 1.1 1 23 177 199 177 199 0.99
4 18 1.3e-05 0.00091 20.6 4.1 1 23 205 227 205 227 0.98
5 18 2.1e-06 0.00015 23.1 2.8 1 23 233 255 233 255 0.98
6 18 1.8e-06 0.00012 23.3 6.1 1 23 262 284 262 284 0.99
7 18 4.2e-06 0.0003 22.1 5.9 1 23 290 312 290 312 0.99
8 18 7.6e-05 0.0054 18.1 1.9 1 23 318 340 318 340 0.97
9 18 0.0021 0.15 13.6 2.8 1 23 346 368 346 368 0.98
10 18 4.1e-07 2.9e-05 25.3 2.7 1 23 374 396 374 396 0.99
11 18 3.9e-06 0.00027 22.2 2.6 1 23 402 424 402 424 0.97
12 18 2.4e-05 0.0017 19.7 2.1 1 23 430 452 430 452 0.96
13 18 0.00018 0.013 17.0 3.8 2 23 459 480 458 480 0.97
14 18 8.8e-06 0.00062 21.1 3.4 1 23 486 508 486 508 0.98
15 18 2.4e-05 0.0017 19.7 1.1 3 23 516 536 514 536 0.98
16 18 0.00029 0.02 16.3 0.8 2 23 543 563 543 563 0.97
17 18 2.9e-05 0.002 19.5 3.3 1 23 569 591 569 591 0.99
18 18 0.0098 0.69 11.5 0.0 2 21 593 612 593 613 0.94

Sequence Information

Coding Sequence
ATGGAACTTGATCTAAACAATTCCAAATGCACGAACATCAGAATAAAATGCGAACCATTAGAATCTACAATTTTGCTCCCAAAGTCAGAATCTTTTGACGTGTGTTCTGATGCTGATATAAAGgaagaagaatatgaagacGTTGGTGCACCACAGATTGTCTCAAATACTGGAATTTCAATTAAcgatattaaaactaaattggATCTCGACGATGATGATTTTTTGAACGGTTGTATCAAGAAAGGGCACGGCGAGCAAGATGCAAgtgataattacattaaaaacgtTAAGAGGGGCGGTGTATCGAAATACACGACAACGCAAGGCAATGAGAGATACAAGTGCAAAATTTGCTCCAGACATTTCAAAACGAGAAGTTCTATATCGAAACATATGAAATTACATTCTGAggtaaaagttgcaaaaattacCGCGGAAAACTACTCGTGTGATATTTGTTTGAGATTATTTGCGACGAAAGGAAGTCACTGGAACCACATGAAGACGCACACGAggcgaagaaattataaatgtgacgTTTGCGGCAAAGCCTTTGCGATGAAAAAGTACATGTTTCAACACGTCAAGACGCACGGCGGCGAAAGAAACCACAAATGCGAAATCTGCGACAAACGCTTCACAACGAAGAAGTACGTGCTGCAGCACATCAAAACGCACAGCACCGAAAAGGACCACAAATGCGACGTGTGCGGCAAACGCTTCGTTCGAAAGGAATACCTGTCGAATCACGTCAAGACACATCTTGGAGAATTCGGGCAGTTTAAATGCGAAATCTGCAAGAAACACTTCACGACAAAGTACAACTTGTCGAAACACGTCAAgacgcacaccggcgagaaaaaatataaatgcgaAACTTGCAAGAAATGCTTCACGACGAAGGAATATTTATTGACGCACATCAAAACGCACGTCGgcgaaaaaaacttcaaatgcGAGCTTTGCGGCAAGTCCTTCACGACGAACCAAACGAAGTCGCGGCACGTCAAGGCGCACACGACGGAAAAAAACCACAAATGCGAAATATGCGCTAAACGCTTCGCGACCAGGAAATTCATGACGCAGCACGTCAAGATACACAGCGgcgagaaaaattacaaatgcgacgtCTGCGATAAAAGCTTCGCGAGGAAACACAACCTGTCGCTCCACGTCAAgacgcacaccggcgagaaaaacttcaaatgcgaaatttgcgcgaAACGCTTTTCGCGAAAGGACCACTTGACGCAGCACGTCAAGGCGCACTCGGGCGAGAGAAATCACGCGTGCGAAATTTGCAGCAAGAGCTTCATGACGAAGGAATATTTATCGAAGCACGTGAGGATGCACGGcgccgaaaaaaaattgaaatgcgaaatttgcacgaaatctTTCGCGTCGAAGCAGTGCATATCGAAACATATGAAGACGCACGCCGGCGAGAAGAACCACACGTGCGAAATTTGCCGCAAACGGTTTGTGACGAAGGAGTATCTGTTGAAACACGTCAGGACGCATGGCGCTGAAAAAAATTTCGGTTGCGAGATTTGCGAGAAAAATTTTGCGACGAAGCAGTACATGTCCAAGCACATGAGgacgcacaccggcgagaaGAATcgcaaatgcgaaatttgcaataagTCGTTCGCGAGCGAAAATTTGCTGAAACACGTCAAGACGCACAGCGTCGAGAAGAAAttcaagtgtgaaatttgcaacaaatgcttcgcGATTAAGGAATACGTTTCGAGGCACATGAAAACGCATcgtaaatgcgaaatttgcgccGAATACTTCTCGACGGTGGAAAATTTAACGAATCACGTGAAAATTTgcggaaaaataaaaacgttctcGGATCCAGGGGGAATCGAAGATGAGAAGTCTTTTCTAAATTATCCACGTAACGTACCGACAGCTGCAACGGATAGAATAAATGGGGTTGATGAACCGTTGATTAAGGAAGAGGGTGATATGTTTCTAAAAAAAGAGACCAACAATGGTAAGAATTCATTGATTTAA
Protein Sequence
MELDLNNSKCTNIRIKCEPLESTILLPKSESFDVCSDADIKEEEYEDVGAPQIVSNTGISINDIKTKLDLDDDDFLNGCIKKGHGEQDASDNYIKNVKRGGVSKYTTTQGNERYKCKICSRHFKTRSSISKHMKLHSEVKVAKITAENYSCDICLRLFATKGSHWNHMKTHTRRRNYKCDVCGKAFAMKKYMFQHVKTHGGERNHKCEICDKRFTTKKYVLQHIKTHSTEKDHKCDVCGKRFVRKEYLSNHVKTHLGEFGQFKCEICKKHFTTKYNLSKHVKTHTGEKKYKCETCKKCFTTKEYLLTHIKTHVGEKNFKCELCGKSFTTNQTKSRHVKAHTTEKNHKCEICAKRFATRKFMTQHVKIHSGEKNYKCDVCDKSFARKHNLSLHVKTHTGEKNFKCEICAKRFSRKDHLTQHVKAHSGERNHACEICSKSFMTKEYLSKHVRMHGAEKKLKCEICTKSFASKQCISKHMKTHAGEKNHTCEICRKRFVTKEYLLKHVRTHGAEKNFGCEICEKNFATKQYMSKHMRTHTGEKNRKCEICNKSFASENLLKHVKTHSVEKKFKCEICNKCFAIKEYVSRHMKTHRKCEICAEYFSTVENLTNHVKICGKIKTFSDPGGIEDEKSFLNYPRNVPTAATDRINGVDEPLIKEEGDMFLKKETNNGKNSLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-