Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:368958-370733[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.7e-06 0.00012 23.3 1.8 1 23 113 135 113 135 0.99

2 17 0.00011 0.0079 17.6 2.4 1 23 141 163 141 163 0.98

3 17 2.1e-06 0.00015 23.0 4.6 1 23 169 191 169 192 0.96

4 17 0.00013 0.0091 17.4 4.0 1 23 197 219 197 219 0.99

5 17 2.6e-06 0.00018 22.8 3.9 1 23 225 247 225 247 0.98

6 17 5.1e-05 0.0036 18.7 9.9 1 23 253 275 253 275 0.99

7 17 1.2e-05 0.00086 20.6 1.7 1 23 281 303 281 303 0.99

8 17 0.00032 0.023 16.2 4.7 1 23 309 331 309 331 0.98

9 17 0.00023 0.016 16.6 6.6 1 23 339 361 339 361 0.99

10 17 8.6e-05 0.0061 18.0 1.7 1 23 367 389 367 389 0.99

11 17 1.8e-06 0.00013 23.3 4.7 1 23 395 417 395 417 0.98

12 17 0.0012 0.086 14.4 7.5 2 23 424 445 423 445 0.98

13 17 2.4e-06 0.00017 22.9 1.7 2 23 452 473 451 473 0.98

14 17 1.5e-06 0.0001 23.5 7.3 1 23 479 501 479 501 0.98

15 17 9.1e-06 0.00064 21.1 2.9 1 23 509 531 509 531 0.99

16 17 1e-05 0.00071 20.9 2.4 1 23 537 559 537 559 0.99

17 17 1.3e-05 0.00093 20.5 1.6 1 23 565 588 565 588 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.7e-06	0.00012	23.3	1.8	1	23	113	135	113	135	0.99
2	17	0.00011	0.0079	17.6	2.4	1	23	141	163	141	163	0.98
3	17	2.1e-06	0.00015	23.0	4.6	1	23	169	191	169	192	0.96
4	17	0.00013	0.0091	17.4	4.0	1	23	197	219	197	219	0.99
5	17	2.6e-06	0.00018	22.8	3.9	1	23	225	247	225	247	0.98
6	17	5.1e-05	0.0036	18.7	9.9	1	23	253	275	253	275	0.99
7	17	1.2e-05	0.00086	20.6	1.7	1	23	281	303	281	303	0.99
8	17	0.00032	0.023	16.2	4.7	1	23	309	331	309	331	0.98
9	17	0.00023	0.016	16.6	6.6	1	23	339	361	339	361	0.99
10	17	8.6e-05	0.0061	18.0	1.7	1	23	367	389	367	389	0.99
11	17	1.8e-06	0.00013	23.3	4.7	1	23	395	417	395	417	0.98
12	17	0.0012	0.086	14.4	7.5	2	23	424	445	423	445	0.98
13	17	2.4e-06	0.00017	22.9	1.7	2	23	452	473	451	473	0.98
14	17	1.5e-06	0.0001	23.5	7.3	1	23	479	501	479	501	0.98
15	17	9.1e-06	0.00064	21.1	2.9	1	23	509	531	509	531	0.99
16	17	1e-05	0.00071	20.9	2.4	1	23	537	559	537	559	0.99
17	17	1.3e-05	0.00093	20.5	1.6	1	23	565	588	565	588	0.98

Sequence Information

Coding Sequence: ATGGAGGAGATTGACGTAAATGATTTCAACTCGATTGTCGAAATAAAACGTGAGCCGTTGGAATGTACAACTTTAATCCAAAAACTCGAGCCTTGCTCTCCTGCTGACGTCGACCAAGAAGAAACGAAATGTGTCGCTACCGTAAAGGACGAGAAATACGAAGTTTCTCACATTGGAATCGCAGCCGATGACATCAGAATTAAGTTGGATCTCggtgacgacgacgacgatccATTGAACTCTGAAACAAGAAAATTCGTATCGGACGAAATCAATTTACACGctgaagaaaaaattcaaagtgaCGAAGATTTTATGCGTCCCAATGGGGGAAGCTACACATGCGACGTTTGCACGAAATCGTTCTCAAGGCAGGACTTTCTTCAGAGCCACGCGAAAACGCACGTCGCCAAAATCGACTACGAATGCgaagtttgcaagaaatgcttcGCGAGGAAGCAACGCCTATCGGaacacgtcaaaatacacaccggggaaataaattataaatgcgacgtttgcgGTAAACGCTACACGAGGAAAGAGCACCTGTCCGGACACATCAAAACGCACCACGGAgttagaaattacaaatgtgaagtttgttaCAAATGCTTCATAAGTAAGCAGTTATTATCGAACCACGTCAAAAGACACACCGTCAAAATTAACCACAAGTGCGAAGTTTGTAACAAACGTTTCACAACGAAACAAAATCTGTCGCGACACGTCGAAACGCACGCCAAGGAAAGCAactacaaatgcgacgtttgtaacaaatgcttcacaagaaAACATCATTTTTCACGGCACGTCGAGACACACACCGGAGacagtaattataaatgtgaagtttgtaGCAAACGCTTCACGAGCGAACGTTATCTTTCGCGGCACGTCGAAAcgcacaccggagaaagaaactacaaatgcgaagtttgcgacaaatgcGTCACGTCGAAACATTATCTTTCGCAACACGTTGAAAAGCACGCCAGAGTAAAAGGGAGGAAGTATAGATGTGAAGTGTGCAAGAAATGTTACTCGTCACAGCAGTGTCTATCGCGTCACCTCGAAACGCACGTCAAAGtgagaaattacaaatgtgaagtttgcagcAAACGCTTCACAATAAGACGTTATCTCTTGCTGCACGTCCGAAcgcacaccggagaaagaaatcacaaatgtgaagtttgcgacaaaCGTTTCACAACAAAACATAATCTTTCAGCACACGTCCAAACGCATACCAACGGTAGTAATAACAAATGCGAATTTTGTAACAAACACTTCACAACGAAACATTATCTTCTGCAACACGTCAAGAAACACACCGGGGAAAGTAAtaacaagtgtgaaatttgcgacaaacgcTTCACAACGAAACGTTATCTCTTGCTGCACGTCCGAACGCACACCGGAGAGAGAAATCACAAGTGCGAAATAtgcgacaaatgcttcacaacgaaACGTCATCTTACACGACACATCGAAATACACGCCAGAGTGAGAGAGAGAAATTATGTATGTGAAGTGTGCGAGAAGCGTTTCACATCGAAACAGTCTTTATCTCATCACGTCAAGACGCACatcggaaaaagaaattacgagtgCGAAGTTTGTAACAAACGCTTCACGACAAAACGTTATGTTTCACGACACGTCAAAACGCACACCGGAGAAGGtgattacaaatgtgaagtttgcgacaaaCGCTTCACAATAAAGGAATATCTTTCGCGACACGTCAAAAGCACACATCGGAGTAAGTAA
Protein Sequence: MEEIDVNDFNSIVEIKREPLECTTLIQKLEPCSPADVDQEETKCVATVKDEKYEVSHIGIAADDIRIKLDLGDDDDDPLNSETRKFVSDEINLHAEEKIQSDEDFMRPNGGSYTCDVCTKSFSRQDFLQSHAKTHVAKIDYECEVCKKCFARKQRLSEHVKIHTGEINYKCDVCGKRYTRKEHLSGHIKTHHGVRNYKCEVCYKCFISKQLLSNHVKRHTVKINHKCEVCNKRFTTKQNLSRHVETHAKESNYKCDVCNKCFTRKHHFSRHVETHTGDSNYKCEVCSKRFTSERYLSRHVETHTGERNYKCEVCDKCVTSKHYLSQHVEKHARVKGRKYRCEVCKKCYSSQQCLSRHLETHVKVRNYKCEVCSKRFTIRRYLLLHVRTHTGERNHKCEVCDKRFTTKHNLSAHVQTHTNGSNNKCEFCNKHFTTKHYLLQHVKKHTGESNNKCEICDKRFTTKRYLLLHVRTHTGERNHKCEICDKCFTTKRHLTRHIEIHARVRERNYVCEVCEKRFTSKQSLSHHVKTHIGKRNYECEVCNKRFTTKRYVSRHVKTHTGEGDYKCEVCDKRFTIKEYLSRHVKSTHRSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -