Gspi014783.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390734.1:40805273-40832166[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00016 0.012 17.1 1.2 1 23 163 185 163 185 0.99
2 22 0.029 2.1 10.0 11.2 1 23 191 213 191 213 0.97
3 22 0.0039 0.28 12.8 2.9 1 23 219 241 219 241 0.98
4 22 9.1e-05 0.0064 17.9 2.9 1 23 247 269 247 269 0.98
5 22 4e-06 0.00028 22.2 1.8 1 23 275 297 275 297 0.98
6 22 0.00059 0.042 15.3 1.8 1 23 303 325 303 325 0.98
7 22 9.8e-07 6.9e-05 24.1 0.4 1 23 331 353 331 353 0.99
8 22 0.02 1.4 10.6 4.9 1 23 359 381 359 381 0.99
9 22 0.0024 0.17 13.5 1.6 1 23 387 409 387 409 0.98
10 22 3.1e-06 0.00022 22.5 2.0 1 23 415 437 415 437 0.99
11 22 0.0042 0.3 12.7 5.5 1 23 443 465 443 465 0.98
12 22 0.00014 0.01 17.3 0.7 1 23 471 493 471 493 0.99
13 22 0.0016 0.11 14.0 6.0 1 23 499 521 499 521 0.98
14 22 0.00018 0.012 17.0 7.1 1 23 527 549 527 549 0.99
15 22 1.9e-05 0.0013 20.0 2.7 1 23 555 577 555 577 0.98
16 22 0.0093 0.66 11.6 6.9 1 23 583 605 583 605 0.99
17 22 0.00018 0.013 16.9 1.1 1 23 611 633 611 633 0.98
18 22 2e-07 1.4e-05 26.3 0.7 1 23 639 661 639 661 0.99
19 22 0.45 32 6.3 6.4 1 23 667 689 667 689 0.98
20 22 4e-06 0.00028 22.2 0.3 1 23 695 717 695 717 0.97
21 22 0.0081 0.57 11.8 2.1 1 23 723 745 723 745 0.96
22 22 4e-06 0.00029 22.2 0.9 1 23 751 773 751 773 0.99

Sequence Information

Coding Sequence
ATGGAGAACCCGAACAGAAATGATTCCAACATCGCAATTGTCGATGTGAAACCAGAGCCAGTGgaatttttaagtttaacaCACCCATTGCAGTCCCACTTTATGTTTTCACATGTCAACAGTGAAAATTTCACGTACAGCGAATCAGAGTACTTAAACGATCCATTGCCGCTAGAAAACACCGTCAGAGTGAAGAACGAAAATGAAGAGACTTCTGTTCCAATCACATCGGCGAGATACATCACAAATCTTGACACCGGTGTAACTCAGGAAGTTTCAACAATCATCGAGCATTTAAATCCTGCTTTAGCGAACGAGAATAAAATTCCTGGAGAAATAAGTGATGACGTCAAACCGAATTTAGTAGTTAATGGCATTGAGGATTTGCAGGATCACGTACGGGACGAAGGCGATAATGAAGAAGGCATAAGTTATTTTCTCACACCGACAAAGACACTAACAGAGCCACCGTACGACAGACGTATTTATAAATGCCAGCTTTGTACAAAAAGCTTCAACACAAGGCCTTATATGTTAGCCCATTTGAAAATTCACATCAACGAGCGGAATCacaattgcaaaatttgtttaaagcaTTTTAAAAGCAAGCACCACATGCTGAAACATATGGAGACGCACACGGATGGAAAGAcatacaaatgtgaaatttgttcTCAGTGTTTCACGACGAAATACATAATGTTGCTTCACATGGAAACACACGTGTccgataaaaattacaaatgtgaaatttgctcaAAATGTTTCACTACTAAGTATGTAATGTTACAACACATGGAGATACACACGAGTGCTAAGAAATACAAATGCGAGGTTTGTGCCAAGAGTTTTAGGACCAAATACAACATGTTCGCACATATGAAATTACACACGAACGAAAGGAATTACAAGTGTGAGATTTGTTCCAAGCGTTTTACGACAAAGTACATCATGTTTCAACACATGGAGATACACACtgacgaaagaaattacaaatgcgaaatttgcgcgaAGAGTTTTAAAACGAACCCGTATTTGTTGGCGCACATGCGAATCCACACCAacgaaagaaactacaaatgtgaaatttgcttCAAGTTTTTCACGACGAAATGCATCATGTTAAAGCACATGGAGACGCACACCAACCAGAGGAATTTCAAATGTGAACTTTGCCCGAAGTATTTCAGAACAAAGTATATAATGTTGCAGCACATGGAGACGCACACCGATGAAAGGAATTACCAATGCGACGTTTGCActaagaaatttaaaactaagtcGTATCTCTTAGCGCATACGAAAGTCCATACGAACGAAAGAAACTTTCAATGTGAAATTTGCCTTAAATGCTTCACAACAAAGTGCAGTATGTTACAACACGTCGAAACCCACACTGACGAAAAAAAATACCAATGCCAGGTTTGCGCCAAGAGTTTTAAAACAAAGCTCTACGTGTTGGCGCACATGAAAGTTCACACCAACGAACGCAACTTCAAATGCAAGATCTGCTCGAAGCATTTCAAgacaaaatacattttgtttaaacaCCTGGAGACGCACACGAACGAACGCAacttcaaatgcaaaatttgctcGAAATGTTTCTCGACCAAGTACATTTTATGGCACCACATGCAAACGCACACCACCGAACGCAAACACAAGTGCGAGATTTGCACGAAGAGCTTCAAAACGAAGATGTACATGGCGGCACACATGAAAATCCACACGAACGAGCGAAACTACAAGTGCGATATCTGCTCGAAATGCTTCACGACGAAGTGCATCATGTCCAAACACATGGAAACGCACACTGGCGAGAAGAACtacaaatgcgagatttgttCAAAGCTCTTTCGGACGAAATACACGATGTTGCAACACATTGAAATACACACACACGAGAAGAAATACAAATGCGAAGTCTGTACTAAAAGTTTCAAAACGAACGCGTACTTGTTGGCACACATGAGGATTCATACCAACGTGAGAAACTTCAAATGCGAACTCTGCTGCAAATCTTTCACTACAAAGTGTATTTTGCTGCAGCACATGGAAACGCACACCAACGAAAGAAACTTCGCGTGTGAGATTTGCCCGAAGAGCTTCAAAACGAAAGCTTATATGTTGGTTCACATGAAAGTTCACAGCAACGAGAGGAACTATGAGTGCGaaatttgctttaaatcatTCACCACAAAATGCATTATGCTACAACATATGGAGATACACACCGacgagaaaaattacaaatgcgagatttgcaCGAAGACGTTTAAGACCAAGGCTTACATACTGGCACACATGAAAGTTCACACCAATGAACGAAACCACGAGTGCAACATGTCGGAAGCTAGACTTGGCGGGTTTCAGAATCAATCCATGTTAGAGGAGTGTAATGTGAccataaaagaagaaattatggaTATCAACAGTGAGCATGATATGACGAGTAGTTTTCCATCGACCATAAACGAAAGTTACACTGGCTCGGCATTCATCGAAGTGAAAGATGAGCccacagaaattttaaatttatcggaCACGCTCAAATCAGAGGACTGGAACGAATCTGAACCTACGTATTATCCCTACATAGTTAAGCAAGAGGAATGCATGTCagttatttcatcattaatggACAAGCACATGGCAATACCGAGTGTGTTTCCAGTGGAGCAGAAATTTTTAAACACCAATGTTCAAACGAGTTCCATTTCCGACGGTAACTTGGAGAGAGTTTTCTCTAATGTTGTTGGAACGTTACGAGGCAACATTGACGCTTCATTAGAAATCGACGATATCGTCCAAAATTCAGACGTAAGGAAAGAACGTGGAGTTACAAATGATAGAATTGAAGATTTCTTCGCCAAGTTGTCGTCCTTAATCAACAACCACGTGGCTGATGATTTCGATATCGAAAGCTACGCTGATATTACCAAGATACTCGATGGCGCAGGCTACAACGTCGATAAACTCATGCTGGAGGTTGGCAATTATTGCAATACAGTTTTGCGAAAATGCTGGTGGAAAGGCATCGAACAGCCGTGCGGTAATCTGTTCAAGGTTATAAAAACAAACGAGGGATTTTGCTGTTCATTCAATTATTACGGCACCAAAGACGTACAAATTGCAGACGCAGATGAAGTTGAAACAAGATACTTTTCTGGAGTTGCTGGACCTTCGTATGGACTAAGGGCCGTCATCGTAGTTGATGAGGATCAGTACGTATCGCATTTCAAAGAAGTTTACGGTGCTGATATTTTGGTTCACGACGGTGAAGATTATCCCGATATGTCGCTACTGGCGAGTTCCATAAATCCCAATCAGGTACTGACCCTTGGTTTATTACCGTCCCTTTTGGTCGGCGACGACAATATACGAGCAATGACTCAATACGAAAGAAGTTGTATCTTTGAAGACGAGGTAAATATGTTTCGTTGCTTCACTTTACACACTCGGCACGCATCGGAATATTAA
Protein Sequence
MENPNRNDSNIAIVDVKPEPVEFLSLTHPLQSHFMFSHVNSENFTYSESEYLNDPLPLENTVRVKNENEETSVPITSARYITNLDTGVTQEVSTIIEHLNPALANENKIPGEISDDVKPNLVVNGIEDLQDHVRDEGDNEEGISYFLTPTKTLTEPPYDRRIYKCQLCTKSFNTRPYMLAHLKIHINERNHNCKICLKHFKSKHHMLKHMETHTDGKTYKCEICSQCFTTKYIMLLHMETHVSDKNYKCEICSKCFTTKYVMLQHMEIHTSAKKYKCEVCAKSFRTKYNMFAHMKLHTNERNYKCEICSKRFTTKYIMFQHMEIHTDERNYKCEICAKSFKTNPYLLAHMRIHTNERNYKCEICFKFFTTKCIMLKHMETHTNQRNFKCELCPKYFRTKYIMLQHMETHTDERNYQCDVCTKKFKTKSYLLAHTKVHTNERNFQCEICLKCFTTKCSMLQHVETHTDEKKYQCQVCAKSFKTKLYVLAHMKVHTNERNFKCKICSKHFKTKYILFKHLETHTNERNFKCKICSKCFSTKYILWHHMQTHTTERKHKCEICTKSFKTKMYMAAHMKIHTNERNYKCDICSKCFTTKCIMSKHMETHTGEKNYKCEICSKLFRTKYTMLQHIEIHTHEKKYKCEVCTKSFKTNAYLLAHMRIHTNVRNFKCELCCKSFTTKCILLQHMETHTNERNFACEICPKSFKTKAYMLVHMKVHSNERNYECEICFKSFTTKCIMLQHMEIHTDEKNYKCEICTKTFKTKAYILAHMKVHTNERNHECNMSEARLGGFQNQSMLEECNVTIKEEIMDINSEHDMTSSFPSTINESYTGSAFIEVKDEPTEILNLSDTLKSEDWNESEPTYYPYIVKQEECMSVISSLMDKHMAIPSVFPVEQKFLNTNVQTSSISDGNLERVFSNVVGTLRGNIDASLEIDDIVQNSDVRKERGVTNDRIEDFFAKLSSLINNHVADDFDIESYADITKILDGAGYNVDKLMLEVGNYCNTVLRKCWWKGIEQPCGNLFKVIKTNEGFCCSFNYYGTKDVQIADADEVETRYFSGVAGPSYGLRAVIVVDEDQYVSHFKEVYGADILVHDGEDYPDMSLLASSINPNQVLTLGLLPSLLVGDDNIRAMTQYERSCIFEDEVNMFRCFTLHTRHASEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-