Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:4257740-4261624[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 4.7e-05 0.0033 18.8 4.3 1 23 14 36 14 36 0.97

2 23 0.00065 0.046 15.2 11.5 1 23 42 64 42 64 0.98

3 23 0.00079 0.056 14.9 3.9 1 23 70 92 70 92 0.98

4 23 1.8e-05 0.0013 20.1 0.4 1 23 98 120 98 120 0.94

5 23 6.4e-05 0.0045 18.4 1.3 1 23 126 148 126 148 0.98

6 23 0.00072 0.051 15.1 7.1 1 23 154 176 154 176 0.98

7 23 3.9e-05 0.0028 19.1 2.9 1 23 182 204 182 204 0.98

8 23 1.7e-06 0.00012 23.3 3.4 1 23 210 232 210 232 0.97

9 23 0.0049 0.35 12.5 0.8 1 23 238 260 238 260 0.91

10 23 0.044 3.1 9.5 4.5 1 21 266 286 266 287 0.97

11 23 0.0016 0.11 14.0 6.2 1 23 372 394 372 394 0.98

12 23 2.7e-05 0.0019 19.6 2.4 1 23 400 422 400 422 0.98

13 23 2.6e-05 0.0018 19.6 1.8 1 23 428 450 428 450 0.98

14 23 1.3e-06 9.2e-05 23.7 0.5 1 23 456 478 456 478 0.99

15 23 0.0011 0.078 14.5 2.1 3 23 486 506 484 506 0.97

16 23 0.1 7.4 8.3 8.2 1 23 512 534 512 534 0.98

17 23 0.0035 0.25 12.9 10.0 1 23 540 562 540 562 0.99

18 23 2.4e-05 0.0017 19.7 2.7 1 23 568 590 568 590 0.99

19 23 0.003 0.21 13.1 3.2 1 23 596 618 596 618 0.98

20 23 0.00074 0.053 15.0 1.7 1 23 624 646 624 646 0.99

21 23 0.0013 0.092 14.3 2.9 1 23 652 674 652 675 0.96

22 23 0.0041 0.29 12.7 3.9 1 23 680 702 680 702 0.98

23 23 5.5e-06 0.00039 21.7 4.1 1 23 708 730 708 730 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	4.7e-05	0.0033	18.8	4.3	1	23	14	36	14	36	0.97
2	23	0.00065	0.046	15.2	11.5	1	23	42	64	42	64	0.98
3	23	0.00079	0.056	14.9	3.9	1	23	70	92	70	92	0.98
4	23	1.8e-05	0.0013	20.1	0.4	1	23	98	120	98	120	0.94
5	23	6.4e-05	0.0045	18.4	1.3	1	23	126	148	126	148	0.98
6	23	0.00072	0.051	15.1	7.1	1	23	154	176	154	176	0.98
7	23	3.9e-05	0.0028	19.1	2.9	1	23	182	204	182	204	0.98
8	23	1.7e-06	0.00012	23.3	3.4	1	23	210	232	210	232	0.97
9	23	0.0049	0.35	12.5	0.8	1	23	238	260	238	260	0.91
10	23	0.044	3.1	9.5	4.5	1	21	266	286	266	287	0.97
11	23	0.0016	0.11	14.0	6.2	1	23	372	394	372	394	0.98
12	23	2.7e-05	0.0019	19.6	2.4	1	23	400	422	400	422	0.98
13	23	2.6e-05	0.0018	19.6	1.8	1	23	428	450	428	450	0.98
14	23	1.3e-06	9.2e-05	23.7	0.5	1	23	456	478	456	478	0.99
15	23	0.0011	0.078	14.5	2.1	3	23	486	506	484	506	0.97
16	23	0.1	7.4	8.3	8.2	1	23	512	534	512	534	0.98
17	23	0.0035	0.25	12.9	10.0	1	23	540	562	540	562	0.99
18	23	2.4e-05	0.0017	19.7	2.7	1	23	568	590	568	590	0.99
19	23	0.003	0.21	13.1	3.2	1	23	596	618	596	618	0.98
20	23	0.00074	0.053	15.0	1.7	1	23	624	646	624	646	0.99
21	23	0.0013	0.092	14.3	2.9	1	23	652	674	652	675	0.96
22	23	0.0041	0.29	12.7	3.9	1	23	680	702	680	702	0.98
23	23	5.5e-06	0.00039	21.7	4.1	1	23	708	730	708	730	0.99

Sequence Information

Coding Sequence: ATGTCGAAACACGTGAAAGCTCACACCGACgacagaaattacaaatgcgaaatttgcgacaaatgcttcacaacgaaCCAAACGATGCTGCGCCACAAGAAGGCGCACACCAATGAAAGAACCCACAAGTGTCACCTTTGCAATAAATGCTATACGACGAAACAACATTTATCGATTCACATCAaaacgcacaccggcgaaagaaattttaaatgcgacgtttgcgaGAAATGCTTCGCGACGAAACACTACATGTTGGAACACGCGAAGGTGCACACGGGAACGAGAAAATATAATTGCGACGTCTGCTCGAAATCCTTCACGTCGAAACAAAATCTGACCGTGCACGCAGAAGCACACACCGGCGAGCGAAACTACGAATGCGAAATCTGCAACAAACGCTTCATAACAAAAAGAGACAAGACCGCGCACGTGAAAAgacacaccggcgaaagaaaccACAAATGCGTAATTTGCGGCAAATGCTTCGCGACCAAACAATGCATTTTACAACACATGAAAACGCACAACAGTCAAAAGAACCACAAATGTGAAATCTGCGACAAATCTTTTTCGACGAAACAATACGCGAAGCAACACGTGAAAGtacacaccggcgaaagaaaccataaatgtgaaatttgcggcaAATGCTTCTCGTTGAGGAGCAATTTGGTGAAGCACGTGAGAGCGCACACCGGGGAGAGAAACTTTAAGTGTGAAGTTTGCGACAAGGGCTTCGCTACGAAGTACACGATGATGTTCCACGTTAAAGGGCACTCTGGCGAACGgaactacaaatgtgaaatttgctgcGAGTGCTTCAAAGGAAAGCGACAGTTATCGAATCACATGAAACTGCTCGCAAGTGTGACACAAAACGTCTTGGATTTCAGCGATGGCAAAGATTTGTTTGAATCTCCCTGTAGTTACACGAAGTTGGATGATCACGAAAGTGGACTTGAAGTATTTAAAATCTGCAAGGAATTAGTTTCAACGTCAACCGACTTACTGAACCGCGTGGATGCAAGGATTGAATTAAACGATACTTTGAAGCACGTGACGGCAGTTGGAAATGAAGGATTTGATGGTCTGCAACCCAACGAAAGAACTTTTAAATGTGCCACGTGCATGAAATGCTTTGTTAAAAAAGGCCATCTGTCGaaacacatgaaaatacacaccggCGAACGAGACCACAAGTGCGATATTTGCACGAAAACCTTCATAAGAAAGCAAGACGTATTGAATCACATGAAGGTTCACACCGgcgaaaaaaatcacaaatgcgaaatttgcaccAAATCCTTCGCGACTCGAAACACCTTACTGATGCACGTGAGAATACACACCggcgaaaaaaatttcaagtgtgAAATCTGCGACAAGCGTTTCATCGTAAACGGCAAATTATTGCGGCACATGAAAGTGCACACGGGCGAACGAAACTACGGGTGCGAAGTTTGCGATAAACGCTTAACGACGAAACAACATCTGTCGACCCATTTGAAACTGCACACcggtgaaaaaaattttaaatgcaaagttTGCGCGAAATGCTTCTCGACGAGGCAACATCGATCGAGCCATTCGAAAATGCACGCCGACGAGAGAAATTACGTTTGCGAAGTCTGTAAGAAATGCTTCAAACTAAAGCACCACCTGTCGTATCATAGGAAGACGCACAGGATCGACAggaattacaaatgtgaaacgtgCTCGAAACATTTCACCGAACCAGACAAGCTAACGATGCACATGAAGATCCACACCGGCGAGAAACAATtcgaatgtgaaatttgcagcaaatgctTTTTAAAAGAGGACAGTTTCACGAATCACATGAAGttgcacaccggcgaaagaaattacaagtgcgagATTTGCGCCAAGCGCTTCACGACGAAAAATATCCTAGCGCAGCACAAGAGAAGACACATCGGCGAAAGCAATTTCAAATGCAAGCTTTGCATCAAGTCGTTCGTGACGAGGAAAAGTCTGTTGAGACATGCGGCGACGCACCACGGCAGGAAAAATTACGAATGTGAATTCTGCGGCAAATGTTGCAAGACGAAAAGCATCCTCGTACAGCACGCGAAAATCCACACCGGTGAACGAAACTACAAGTGCGAAATGTGCACGAAGTGCTACAGTCGAAAGGAAGATCTGTCACGACATTTGAAAGTGCACGGTGTTGAAAAAGATTACGCGTGTGAAATTTACCGGCAAGGGTTCAAGAGAAGGAAAGCATTGATCGAACAAGAAAAAACACACCTTGAAGAAAACGGCAGAGATTACTTTGGGCAGCCGTTTACAATAGAAGAAAATGACCAGATTGTACATCGACGGATTAAACAAGAGAATGCGTTCGTAAAGGAACAAAAGTTGGAGATCGACGATGCCGATGTGAAGGAAATTAATCTCTCCATGAATGCGACCACGAATTATGATTGCACCTGGCACATGGAAGTGAAGCCAGAACCGACGAAAATTTTATCATCACCGcaaataatcaaatttgaaaatgcaagcAAATGA
Protein Sequence: MSKHVKAHTDDRNYKCEICDKCFTTNQTMLRHKKAHTNERTHKCHLCNKCYTTKQHLSIHIKTHTGERNFKCDVCEKCFATKHYMLEHAKVHTGTRKYNCDVCSKSFTSKQNLTVHAEAHTGERNYECEICNKRFITKRDKTAHVKRHTGERNHKCVICGKCFATKQCILQHMKTHNSQKNHKCEICDKSFSTKQYAKQHVKVHTGERNHKCEICGKCFSLRSNLVKHVRAHTGERNFKCEVCDKGFATKYTMMFHVKGHSGERNYKCEICCECFKGKRQLSNHMKLLASVTQNVLDFSDGKDLFESPCSYTKLDDHESGLEVFKICKELVSTSTDLLNRVDARIELNDTLKHVTAVGNEGFDGLQPNERTFKCATCMKCFVKKGHLSKHMKIHTGERDHKCDICTKTFIRKQDVLNHMKVHTGEKNHKCEICTKSFATRNTLLMHVRIHTGEKNFKCEICDKRFIVNGKLLRHMKVHTGERNYGCEVCDKRLTTKQHLSTHLKLHTGEKNFKCKVCAKCFSTRQHRSSHSKMHADERNYVCEVCKKCFKLKHHLSYHRKTHRIDRNYKCETCSKHFTEPDKLTMHMKIHTGEKQFECEICSKCFLKEDSFTNHMKLHTGERNYKCEICAKRFTTKNILAQHKRRHIGESNFKCKLCIKSFVTRKSLLRHAATHHGRKNYECEFCGKCCKTKSILVQHAKIHTGERNYKCEMCTKCYSRKEDLSRHLKVHGVEKDYACEIYRQGFKRRKALIEQEKTHLEENGRDYFGQPFTIEENDQIVHRRIKQENAFVKEQKLEIDDADVKEINLSMNATTNYDCTWHMEVKPEPTKILSSPQIIKFENASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -