Gspi032268.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:12623723-12629763[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.6e-05 0.0061 18.0 1.6 1 23 126 148 126 148 0.98
2 19 9.3e-07 6.6e-05 24.2 3.2 1 23 154 176 154 176 0.99
3 19 0.00056 0.039 15.4 4.0 1 23 182 204 182 204 0.98
4 19 0.0056 0.39 12.3 2.7 1 23 210 232 210 232 0.97
5 19 1.1e-05 0.00081 20.7 4.0 1 23 238 260 238 260 0.98
6 19 6.7e-05 0.0047 18.3 4.5 1 23 266 288 266 288 0.96
7 19 3.6e-06 0.00025 22.3 5.6 1 23 294 316 294 316 0.99
8 19 5.4e-06 0.00038 21.8 2.5 1 23 322 344 322 344 0.98
9 19 2.9e-06 0.0002 22.6 2.3 1 23 350 372 350 372 0.98
10 19 0.01 0.71 11.5 3.0 1 23 378 400 378 400 0.96
11 19 9.8e-05 0.0069 17.8 4.2 1 23 406 428 406 428 0.98
12 19 3.8e-05 0.0027 19.1 1.1 1 23 434 456 434 456 0.99
13 19 2.2e-06 0.00016 23.0 5.5 1 23 462 484 462 484 0.99
14 19 0.0076 0.54 11.9 5.3 1 23 490 512 490 512 0.98
15 19 0.0005 0.035 15.6 1.1 2 23 519 540 518 540 0.96
16 19 1.6e-05 0.0011 20.3 3.8 2 23 547 568 546 568 0.98
17 19 8.6e-07 6.1e-05 24.3 3.8 1 23 574 596 574 596 0.99
18 19 1.3e-05 0.00093 20.6 3.0 1 23 602 624 602 624 0.99
19 19 0.0014 0.096 14.2 5.9 1 23 630 652 630 653 0.95

Sequence Information

Coding Sequence
ATGGAGATTGATATAAATGATTCGAAGTGCACAATCATCGACGTTAAACCTGAACCAATGGATTGTCCAACCGTGTTCCCAAAATTGGAGTCTAACTATGGATATTCGCACGTTGAAATTGATCGCAAAAAAGCCAAATGTGCCATTAccataaaaaaagaagaatatgaaGTACCAAACTCCGAAATATCGCTCAATGCCCTTGGTGTACACAGTGACATGAAAATAAAGTTGGATATCTGTGACAACGACGTGTTGAGCTGTAACATCAAGAAGGAGCCAGGCGAACAAGACAACGCAAGTGAAATTTCCATTGGTCCATCGAACGTGACGAAACACCTAACACCAGTTAAAACACGTACCGACGAAACAAATTTTAAGTGCGACATCTGTTACAAAGGCTTCACGACGAAGTACTACATGTTGCAGCACGTGCGAGCGCACACCGGCGAAACGaactacaaatgcgaaatttgcaccAAATGCTTCACATCGAAGCAGAACCTCGCCGTGCACGTCAAAACCCACAGCGGCGAACGAAACCACAGGTGCAAAATCTGCGACAAACGCTTCACGACGAACATAATCATGACGCGGCACTTGAAAAcacacaccggtgaaagaaattacaactgCGAGGTTTGCGCGAAACGCTTCAAAACCAAACAGTGCATGCTGCAGCACGTCAGGGCGCACGGCGACGAGCAAAACCACAAGTGCgagatttgcgcaaagtgcttcACGTCGAAGCAGACCCTCGCCGCGCACCTGAGGACGCACACCGGTGAGAAGAACttcaagtgcgaaatttgcaacaaatgcttcacaacgaaCCACAGCATGTTGCGGCACGTCGAAGCGCACACCGACGACAGGAACTACAAGTGCGCGACTTGCGACAAGTGCTTCCGCACGAAGGAGAATCTCTCGCATCACGTCCGGGTGCACACCGGCGAGCGGAATTTCGAATGCGAAACCTGCAAGAAACGTTTCAGGACGAAAGAGCAGCTTTCACAGCATTTGAAAATTCACACCGGCGAGCGAAAGTTCAAATGCGAACTTTGCGGCAAGCTCTTCCGCACGAAGGAGCATTTGTCGCAACATATTCGAGCGCACAGCGGTGAAAGAAActtcaaatgtgaaatttgcaacaaacgaTTCAAGATAAAACAGTGCATGTTGGAGCACGTAAAAGCGCACACCGGAAAAACGAACTACAAATGCGACATTTGCAATAAACGATTCACGACGAAGCGATACATGCTGCACCACGTTAAAGCGCATACCGACGAACAAAACTACGtgtgcgagatctgtgataaaCGCTTCGCGACAGATCTACACTTGTCCAACCACGTCAAGACGCACAACCTCGAACGAAACTTCAAATGCGAAACTTGCGACAAAACCTTTCGAACGAAGGAACATCTGTCGAAGCACGTCAAGCGACACAGCGGCGAGCGGAACTTCAAATGCGAGTTCTGCAACAAGTGCTTCGCGACGAAGCGCTACCAGCTGCAGCACGAGAAAGTGCACACCGACGAGCAGAGcaacaagtgcgaaatttgcaataagAGTTTCACGACGACGCAGTACATGTTGCAGCACGTGAAGGCCCACGGCGACGAGCACAACAACAAATGTGGATTTTGCGATAAATCGTTTGCAACGAAGCAACATTTATCGAGACACGTCAAGACGCACACCGgggagaaaaattttaaatgcgaaaCGTGCGATAAAAGCTTCTCGACGAAGCAACACCTGTCGAATCACATCGAAACGCACACCGGGAAAAAGAATTACAAGTGCGGAATTTGCAATAAACGCACGACGACCAAACGATATTTGTCGCAGCACATGAAGATGCATACCGGGGAAGGGAACCACAAATGTGTAATTTGCGACGAGCACTTCAGGAAAAGGAAAGAGTTGTTGGAACATATGAAAGAACATCATGGGGAATGCAGCGAGGAAGACTCGCTTCAAAATTCAACAACAGAGAAAATTTTCGAGATGAATGAACTGTTAATTAAGGAAGAGGCTTGTATGTTTCTGAAGACAGATAACTGGGAGATGAATAATgATATTGTAGAAACAAAACCGTTTGCGGCTACAAATGAAAATCGTGTTGGGGAAGACGAACCTAAATCAACACAACTTTCAAATCAATGGCAGACGCTccgaaatgaaattataatcaaGGAAGAACACACAATGGACACCTGA
Protein Sequence
MEIDINDSKCTIIDVKPEPMDCPTVFPKLESNYGYSHVEIDRKKAKCAITIKKEEYEVPNSEISLNALGVHSDMKIKLDICDNDVLSCNIKKEPGEQDNASEISIGPSNVTKHLTPVKTRTDETNFKCDICYKGFTTKYYMLQHVRAHTGETNYKCEICTKCFTSKQNLAVHVKTHSGERNHRCKICDKRFTTNIIMTRHLKTHTGERNYNCEVCAKRFKTKQCMLQHVRAHGDEQNHKCEICAKCFTSKQTLAAHLRTHTGEKNFKCEICNKCFTTNHSMLRHVEAHTDDRNYKCATCDKCFRTKENLSHHVRVHTGERNFECETCKKRFRTKEQLSQHLKIHTGERKFKCELCGKLFRTKEHLSQHIRAHSGERNFKCEICNKRFKIKQCMLEHVKAHTGKTNYKCDICNKRFTTKRYMLHHVKAHTDEQNYVCEICDKRFATDLHLSNHVKTHNLERNFKCETCDKTFRTKEHLSKHVKRHSGERNFKCEFCNKCFATKRYQLQHEKVHTDEQSNKCEICNKSFTTTQYMLQHVKAHGDEHNNKCGFCDKSFATKQHLSRHVKTHTGEKNFKCETCDKSFSTKQHLSNHIETHTGKKNYKCGICNKRTTTKRYLSQHMKMHTGEGNHKCVICDEHFRKRKELLEHMKEHHGECSEEDSLQNSTTEKIFEMNELLIKEEACMFLKTDNWEMNNDIVETKPFAATNENRVGEDEPKSTQLSNQWQTLRNEIIIKEEHTMDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-