Gspi032300.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:12926719-12928626[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.8e-05 0.0013 20.1 6.1 1 23 106 128 106 128 0.97
2 18 5.7e-05 0.004 18.6 4.0 1 23 134 156 134 156 0.98
3 18 7.7e-06 0.00054 21.3 3.3 1 23 162 184 162 184 0.99
4 18 4.8e-05 0.0034 18.8 2.2 1 23 190 212 190 212 0.96
5 18 3.4e-05 0.0024 19.3 1.0 1 23 218 240 218 240 0.96
6 18 9.7e-05 0.0068 17.8 1.2 1 23 246 268 246 268 0.99
7 18 3.9e-05 0.0028 19.1 1.0 1 23 274 296 274 296 0.97
8 18 1.3e-05 0.00093 20.5 3.0 1 23 302 324 302 324 0.98
9 18 0.00014 0.0096 17.4 8.4 1 23 330 352 330 352 0.99
10 18 3.5e-05 0.0025 19.2 0.5 1 23 358 380 358 380 0.97
11 18 1.7e-06 0.00012 23.4 1.2 1 23 386 408 386 408 0.99
12 18 0.0001 0.0071 17.8 1.9 1 23 414 436 414 436 0.98
13 18 0.00023 0.016 16.6 3.8 1 23 442 464 442 464 0.98
14 18 3e-06 0.00021 22.6 3.2 1 23 470 492 470 492 0.99
15 18 0.00033 0.023 16.1 4.2 1 23 498 520 498 520 0.97
16 18 5.6e-06 0.00039 21.7 1.7 1 23 526 548 526 548 0.98
17 18 1.2e-05 0.00083 20.7 2.6 1 23 554 576 554 576 0.99
18 18 2.7e-05 0.0019 19.5 5.3 1 23 582 604 582 604 0.98

Sequence Information

Coding Sequence
ATGGAGGCTGTTATTGATGATTCCGTAATCTTGAGAGCTAAAGGTGAATCAAAGGAATTTTCAACCTCATTCGCAGAATTAGCGGTAAGCATAAAAGAAGAATACGACGATGCTTCTACAGCAGAGACTGTTAGCATAGCACCAcagaatattttaaacaaagaaaTCGTTGATGATATCAAAGTTAAGTTGAATGTCGGGGACAACGATTTCTTGAATAACGAGGGAACGAGTGAACGCGCTTTGAAATACACGACAATACTTGGTGATGAAAGTTACaagtgcaaaataaaaagacaCAACAGTGGAAGAAACCACAAATGCAACATTTGCAGCAGATGCTTCACCACAAACCAAAGTTTGCTGCGACACATGAAAGCGCACAGCGGCGaacgaaattacaaatgtgaaatttgtaacaaatgttTCACGACGAAACAATACATGCTGCAACACGTCAAAGCGCACACCGACGGACAAGactataaatgtgaaatttgtaataaaaacttTGCTACGAAGCAGCACTTATCGAATCACGGCAAAACACACACCGGAGAAAAGAACtacaaatgcgagatttgtgGCAAACACTTTACGACGAAACAATATATGTTACAACACGTGTCGGCGCACACGGACGAACAAAgctacaaatgcgaaatttgcgacaaacgcTTCGCAACCAACCAAAGCATGTTGCGGCACTCGAAAGCGCACACCGGCGAACGCAACTacgaatgtgaaatttgcaataaatacttCGCTACGAGACAATACATGTTACAACACGTAAAGACGCACTCGGGCGAAAGGAAatttaaatgcgaaatttgcaataaacgcTTCTCGACGAAGCGGTGGATGCTGGAACACGTGAAAGCTCACACCGAAAGAACGTATTTCATATgcgaattttgcaataaatgctttacattaaaacaaaacctAGCCGTGCACATGAAGATGCACACCGACGGAAGGAACTACACGTGCAAGATTTGCAACAAGTGCTTTACGTCGAAACACTGGAAGCGTTCGCACATGAAGATGCACTCCGGGGAGCGAAACTACAAGTGCGATATCTGCGACAAACGCTTCGCGACGAAACCTTACATGTTGCAGCACGTGAAGGCGCACACGGACAAGCCGaactataaatgtgaaatttgtaacaaatccCTGACGACTAAGCAGAATTTAGCGACGCACGTCAAAACCCACACGGGCGAAAAAGGCTACAAATGCGGATTTTGTAGCAAATCGTTCACGACGAACCAAAGCATGTTGCGACACGTGAAAGCGCACGCCGGCGAACGCAactacaaatgcgacgtttgtaATAAGTGTTTCGCGACGAAACAATATATGTTGCAACACACGAAAGCCCACACCGACGAACAAACGTATAAATGCGACGTTTGCTCCAAGCGATTCGCGACTAAGCAACACCTGACCGTGCACGTCAagacgcacaccggcgaaagaaactTCAAATGCACGATTTGCACAAAACGCTTCACCACGAAGCATTACATGTTGGAGCACGTGAAGGCGCACACGGGGAAAACGAATTACAACTGCGGGGTTTGCGACAGGTGCTTCACGTCGAAAAATAACCTCGCGGTGCACACGAAGGTGCACAGCCACGAGCGAAATTacgaatgtgaaatttgcaagaaacgCTTCTCGACGAAACACTGGATGTCGGCGCATGTTAAAACGCACGCCGGAGCAAGGaaccacaaatgtgaaatttgcaatcgGCATTTCAGGAGAAGGAAAGCGTTGTTGGAACACATGAAAATGCATGCTGGAGGGAACAGAGAGGAAGAATCTCTTCGAAAAGCAACTGGGGAAATTAGCCAGTTTGATGAACCTTTCATCAAGGAAGAGACTGGTGAGTAG
Protein Sequence
MEAVIDDSVILRAKGESKEFSTSFAELAVSIKEEYDDASTAETVSIAPQNILNKEIVDDIKVKLNVGDNDFLNNEGTSERALKYTTILGDESYKCKIKRHNSGRNHKCNICSRCFTTNQSLLRHMKAHSGERNYKCEICNKCFTTKQYMLQHVKAHTDGQDYKCEICNKNFATKQHLSNHGKTHTGEKNYKCEICGKHFTTKQYMLQHVSAHTDEQSYKCEICDKRFATNQSMLRHSKAHTGERNYECEICNKYFATRQYMLQHVKTHSGERKFKCEICNKRFSTKRWMLEHVKAHTERTYFICEFCNKCFTLKQNLAVHMKMHTDGRNYTCKICNKCFTSKHWKRSHMKMHSGERNYKCDICDKRFATKPYMLQHVKAHTDKPNYKCEICNKSLTTKQNLATHVKTHTGEKGYKCGFCSKSFTTNQSMLRHVKAHAGERNYKCDVCNKCFATKQYMLQHTKAHTDEQTYKCDVCSKRFATKQHLTVHVKTHTGERNFKCTICTKRFTTKHYMLEHVKAHTGKTNYNCGVCDRCFTSKNNLAVHTKVHSHERNYECEICKKRFSTKHWMSAHVKTHAGARNHKCEICNRHFRRRKALLEHMKMHAGGNREEESLRKATGEISQFDEPFIKEETGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-