Gspi014782.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390734.1:40791231-40793936[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0023 0.16 13.5 8.0 1 23 125 147 125 147 0.98
2 25 0.006 0.42 12.2 4.6 1 23 153 175 153 175 0.98
3 25 0.0013 0.092 14.3 3.5 1 23 181 203 181 203 0.99
4 25 5e-06 0.00035 21.9 1.4 1 23 209 231 209 231 0.99
5 25 0.027 1.9 10.1 6.1 1 23 237 259 237 259 0.98
6 25 0.0019 0.13 13.8 3.4 1 23 265 287 265 287 0.99
7 25 8.3e-07 5.9e-05 24.3 1.2 1 23 293 315 293 315 0.99
8 25 5.8e-05 0.0041 18.5 3.6 1 23 321 343 321 343 0.99
9 25 6.1e-06 0.00043 21.6 0.6 1 23 349 371 349 371 0.99
10 25 0.0013 0.094 14.2 5.2 1 23 377 399 377 399 0.99
11 25 0.0034 0.24 13.0 4.7 1 23 405 427 405 427 0.99
12 25 6.4e-05 0.0045 18.4 3.7 1 23 433 455 433 455 0.97
13 25 6e-05 0.0042 18.5 1.8 1 23 461 483 461 483 0.98
14 25 0.0045 0.32 12.6 1.4 1 23 489 511 489 511 0.97
15 25 4.3e-06 0.00031 22.1 1.5 1 23 517 539 517 539 0.98
16 25 0.00013 0.0095 17.4 3.9 1 23 545 567 545 567 0.98
17 25 0.015 1.1 10.9 6.0 1 23 573 595 573 595 0.98
18 25 0.0002 0.014 16.8 3.4 1 23 601 623 601 623 0.99
19 25 0.0016 0.12 14.0 2.2 1 23 629 651 629 651 0.97
20 25 0.036 2.6 9.7 4.3 1 23 657 679 657 679 0.97
21 25 2.4e-06 0.00017 22.8 2.0 1 23 685 707 685 707 0.98
22 25 5.5e-06 0.00039 21.7 1.0 1 23 713 735 713 735 0.98
23 25 0.04 2.8 9.6 0.2 1 23 741 763 741 763 0.96
24 25 0.00037 0.026 16.0 2.3 1 23 769 791 769 791 0.98
25 25 0.00055 0.039 15.4 6.8 1 23 797 819 797 819 0.98

Sequence Information

Coding Sequence
ATGGAGAAGAATACAACTGAACCCATCTTTGCAACTGTTGAAGTGAAACCTGAACCGAcagaaattttagatttaacgGAAACCCCGGCCTCTGAGTGCTCGTTCGCTCATGTCGTCGACGGACGTTTGGTGATTGACGAATCGGAACACGTACACGAACCGTCGAGTGAAGATAACCCCTCGCTGgtgaaacaagaagaaaatgtaatGATTTCCGTCCCGGCGACGGAAAATTGCGTTTCAAAACCCGACCCGCTCGGTGTGACCCAGGAGTCGACGTTCGACAATCTCAACGCGTTCACCACCTTGGATTGCTTCAAGAACGAGAACAAATTCGACGTGCTTCGTTATGTGCGTGAACGAAATCAAATTCACCGATGCAAAATTTGCTCGAGACATTTCAAAACGAAGTTCACGATGCTGAAGCACATGGAAACGCACGCAAgtcaaagaaattacaaatgcgagtTTTGCTCGAAGTGCTTCACGACGAAATACATTATGTTGCTTCACATGGAAACCCACACGAGCGAAAGGAATTACAAGTGCAGAATTTGCTCCAAGCGCTTTACTACGAAATACATCATGTTTCAGCACATGGAGACGCACACCAGCGAAAGAAATTATAAGTGCAACGTGTGCTTTAAGACTTTCAAAACTAAGGCGTATATATTAGCGCACATGAGAGTTCACACCAACGAACGGAATCACAAATGTAAGATTTGCTTTAAGTTCTTTAAAACGAAGTATATTATGTTGAAGCACATGGAGCGGCACAccaacgaaagaaattacaaatgtgagaTATGCTTGAAGTGTTTCACGACTAAGTACATCATGTTGCAACACATGGAGACGCACAACAACGAAAGGAAATacaaatgcgagatgtgtccgAAAAGTTTCAGAACGAAGAGTAATATGTTGCAGCATGTTGAGACCCATACCAGCGAGAGgaattacaagtgcgaaatATGCTCGAAATGTTTCACGACGAAGTACATTTTGCTGCAGCACATGGAGACGCACACCGACGAAAGGAACTACACTTGTGAAATTTGCTCCAAGAGTTTTAAAACCAGGGCGTACATACTGGCGCACATGAAAGTCCATACCAACGAGCGAAATTTTAAATGCGAGATTTGCCCTAAGCACTTCAAGACGAAGCACATTATGCTGAAACACATGGAGACTCACACGGACGAACGGAACTACAAGTGCGAAGTTTGTTTTAAATGCTTCAAAACGAAGTATATAATGTTGCAACACATGGAGACTCACACCACCGAAAAGAAGTACCACTGCGAGATTTGCACGAAGAGCTTCAGAACGAAGAGCAACATGTTGCAGCATTCCGAAACCCACACCAACGAGCGAAATTACAATTGCGAAGTCTGTTCGAAGAATTTTAAAACGAAGCCGTGCATGATAGCGCACATGCGAGTGCACACGAACGAAAGGAACTACATTTGCAGCATTTGCTTCAAGCAATTCAAAACGAAGTATATTATGTTGAAACATATGGAGATTCACACAAACGAAAAGAAgtataaatgcgaaatttgcacgaaGAGCTTCCGAACAAAAAGCAACATGCTGCTGCACGCGAATTCTCACACCGACGAGAAGAATtacaaatgcgagatttgctCAAAATGCTTCAAGACGAGGCTGTACATGCTGGCGCACATGAAACTCCACACCAccgaaagaaatcacaaatgcgaaCTGTGCTCCaagcattttaaaacaaagtatattATGTGGAAACACATGGAGACACATACCaatcaaagaaattacaaatgcgaaatttgctcGAAGTGTTTTACGacgaaatacattttattgcaacactTGGAGACGCATACCAACGAAAGGAACTACCAATGCGAGATTTGCTTCAAGAATTTCAAAACTAGGCCGTATATGTTGGCGCATACCAAATTCCATTCCAACGAAAGGAACCATGAATGCAGCGTTTGTTCCAAGCAATTTAAAACGAAGCACATCATGCTGAAGCACATGGAAATACACACGGACGAGAGGAATTACAAGTGCGATATTTGCGTCAAGACTTTCAGGACGAAAAGCAATATGTTGCAACACATGACGTCACACAATAAGGAAAAGAATCACAAATGCGAAGTTTGTCCTAAGGTTTTCAAGACGAGGCCGAATATGTTGGCGCATATGAAACTCCACACGAACGAAAGGAACTACGCGTGCGCCATATGCGCCAAGCAGTTTAAAACGAAATACATTATGTTGCAGCACATGGAAATACACACAAACGAAAGGAATTTCAAGTGCGAAATCTGCTGCAAGAGTTTTAAAACTAAGGCTTATTTGTTGGCACACGCGAAGGTGCACACCAacgagaaaaatttcaaatgcaatatttgctttaaacatttcaaaacgaAGTACACCATGTTTGAACACATGAAATTGCACGTGAATCAATTTGATGACGAAGATGCTGTACGAAAAGTGCTGCACAATATACAAATGATAGAATCCAGACAGGAGGCCAATAACGGCTTTCAGACCCAATCGATCGTGGAAAACTGCAATGTGACTATAAAGCAAGAATATTTGGAAAACGACGATGAGCATGTAGAGTCGTATGCAATGTAA
Protein Sequence
MEKNTTEPIFATVEVKPEPTEILDLTETPASECSFAHVVDGRLVIDESEHVHEPSSEDNPSLVKQEENVMISVPATENCVSKPDPLGVTQESTFDNLNAFTTLDCFKNENKFDVLRYVRERNQIHRCKICSRHFKTKFTMLKHMETHASQRNYKCEFCSKCFTTKYIMLLHMETHTSERNYKCRICSKRFTTKYIMFQHMETHTSERNYKCNVCFKTFKTKAYILAHMRVHTNERNHKCKICFKFFKTKYIMLKHMERHTNERNYKCEICLKCFTTKYIMLQHMETHNNERKYKCEMCPKSFRTKSNMLQHVETHTSERNYKCEICSKCFTTKYILLQHMETHTDERNYTCEICSKSFKTRAYILAHMKVHTNERNFKCEICPKHFKTKHIMLKHMETHTDERNYKCEVCFKCFKTKYIMLQHMETHTTEKKYHCEICTKSFRTKSNMLQHSETHTNERNYNCEVCSKNFKTKPCMIAHMRVHTNERNYICSICFKQFKTKYIMLKHMEIHTNEKKYKCEICTKSFRTKSNMLLHANSHTDEKNYKCEICSKCFKTRLYMLAHMKLHTTERNHKCELCSKHFKTKYIMWKHMETHTNQRNYKCEICSKCFTTKYILLQHLETHTNERNYQCEICFKNFKTRPYMLAHTKFHSNERNHECSVCSKQFKTKHIMLKHMEIHTDERNYKCDICVKTFRTKSNMLQHMTSHNKEKNHKCEVCPKVFKTRPNMLAHMKLHTNERNYACAICAKQFKTKYIMLQHMEIHTNERNFKCEICCKSFKTKAYLLAHAKVHTNEKNFKCNICFKHFKTKYTMFEHMKLHVNQFDDEDAVRKVLHNIQMIESRQEANNGFQTQSIVENCNVTIKQEYLENDDEHVESYAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-