Gspi031242.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1469525-1471624[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.7e-06 0.00012 23.4 2.1 1 23 113 135 113 135 0.99
2 21 3.1e-05 0.0022 19.4 4.7 1 23 141 163 141 163 0.98
3 21 5.6e-05 0.0039 18.6 1.8 1 23 169 191 169 191 0.99
4 21 7.8e-05 0.0055 18.1 0.9 1 23 197 219 197 219 0.99
5 21 1.2e-05 0.00087 20.6 4.8 1 23 224 246 224 246 0.99
6 21 0.00036 0.025 16.0 1.9 1 23 252 274 252 274 0.97
7 21 0.0011 0.076 14.5 3.8 1 23 280 302 280 302 0.98
8 21 0.0017 0.12 13.9 1.4 1 23 308 330 308 330 0.98
9 21 4e-05 0.0028 19.0 0.4 1 23 336 358 336 358 0.98
10 21 0.00014 0.0096 17.4 1.2 1 23 364 386 364 386 0.97
11 21 0.0001 0.0073 17.7 5.5 1 23 392 414 392 414 0.97
12 21 9.5e-05 0.0067 17.8 3.7 1 23 420 442 420 442 0.98
13 21 0.00067 0.047 15.2 3.1 1 23 448 470 448 470 0.97
14 21 0.00027 0.019 16.4 5.3 1 23 476 498 476 498 0.97
15 21 0.00016 0.011 17.2 4.4 1 23 504 526 504 526 0.99
16 21 2.4e-05 0.0017 19.7 3.3 1 23 532 554 532 554 0.99
17 21 6.9e-06 0.00048 21.4 0.9 3 23 562 582 560 582 0.98
18 21 2.4e-05 0.0017 19.7 2.4 1 23 588 610 588 610 0.96
19 21 6e-05 0.0042 18.5 5.5 1 23 616 638 616 638 0.98
20 21 6.7e-05 0.0047 18.3 3.9 1 23 644 666 644 666 0.98
21 21 0.00019 0.014 16.9 6.3 1 23 672 694 672 694 0.98

Sequence Information

Coding Sequence
ATGGACGTAAAAACCGAACCAACGACTTTAACGCTAGAGACGGAGTTTTCCTACCCAGAAAACACCGTCAAGATAAAGGAAGAGGAACGAGAGGATGCATACGTACCACcggaaaaaattaaactcgATTTTCCAAATACAACCAATGACGATGTTAAAATCAAGGCGGAGCTCAGCGACGATAATTCGTTGAACTCGTACAGCTACGACGAGCCGGTCGATCGCAAAAATGAGATTAAAATCGAATTCCACAGCGacggtattttaaaattagaaggCGAAATTCCCACAAGGATTTTTCAAAAGAAGAATTACATACACGCCaacgaattaaattacaaatgcgacATTTGCACGAAATTATTCACGAGAACGGCGAATCTTCTACGGCACATGAAAAAACACGCCGGCGGAAAAAACCACAAATGCGGAGTTTGCGACAAACGCTTCAAAACCAAACAATATTTATCGAAGCACGTGAAATCGCACGGCGGCGAAACGAACTACAAATGTGGAATTTGCGCCAAGTTCTTCGTGACGAACGGCTGCTTAAAAAGACACGTCGAAACGCACGCCGGCAGAAAGGAGttcaaatgcgaaatttgcgccaAGCGCTTCGGATCGACGCAGAACATGTCTGCGCACATGAAAACGCACGGCGAAAGGAATTACAAATGCGAGACTTGCGACAAGTGCTTCGGGAGGAACCAACATTTGCTGGCGCACGTCAAGACGCACACGGGCGAACGAAACTACGAATGCAAAATTTGCTCGAAACGCTTTATAACGAAGCAACGGTTGGCGACGCACGTGAAATTCCACACAAACGAACGGAACTACGAATGCGCAGTTTGCGATAAGCGCTTCAAAACTAAGCAGTGCATGTTCCAACACGTGAAGTTACACAATCGCGGGAAAGACTACGAATGtgcaaattgcaataaatacttCTCGACTAAGCAACGCGTGTCGATGCACATGGAAACGCACGCCGGtgaaaaaaactacaaatgtgaaatttgcccCAAACGCTTCCTAACGAAAGGAAATCTCGTGAAACACGTCGTGACGCACACCGACGATCGGAACTACCAATGTGTAATTTGCAACAAGTTCTTCAAAACGAAACAGTACATGTTGGCGCACGTGAAAGCGCACACGGCCGAAAGGAACCACAAATGCGACGTCTGCGACAAATCGTTCACGACGAGACGCTGCCTGTCGAGACACGCAGACACGCACACCAGCAAAAAGGACCACGAGtgcaaaatttgcaacaaacgtTTCAAATCGTCGCAGTACATGTCGGCGCACGTGAAAACCCACTCGGCCGAATTAAACCACGAATGCAAAGTTTGCCGTGAAAGCTTTTCGAGCAAACAACATATGTTGGCACACGTGGAAACGCACGCCGACGAACGAACtcataaatgcgaaatttgcacgaaGCGCTTCGTAACGAAACAACGATTAACGACGCACATGAAATTCCACTCCGACGAAAGGAACTACGAATGCGCGCTTTGCGACAAGCGCTTCAAAACGAAGCAGTGCACGCGGGCGCACATGAAGACGCACTCGGGCGAGCGAAACTACAAATGCGCGACGTGCGATAAATTCTTCACGACCAAGCAGTACATGCTGACGCACATGCAgacgcacaccggcgagagGAACTACGGGTGCGACGTTTGCACGAAACGCTTCATaactaaagaaaatttaatgaaacacgTCAAGACGCACACCGGCGATAAAAACCACGCGTGCGAGATTTGCGACAAACGCTTCAAATCGAAGCAGTACATGACGGCGCACGTGAAGACGCACGTCGGCGAGAGGAACTATACATGCGACGTTTGTGCAAAGTGCTTCACGACGAAGGGATGTCTGACGAGACACGTGAAATCGCACGCGGGCGATAAAAACTACAACTgcgaaatttgtaacaaatgcttCAAGTCGAAGCAGTATATGACGGCGCACGTGACgacgcacaccggcgaaagaatccacaagtgtgaaatttgtgCGAAATGCTTTATAATAAAAGGGCATCTCACAAAGCATATGAAATCGCACGCcagtgaaacaaattaa
Protein Sequence
MDVKTEPTTLTLETEFSYPENTVKIKEEEREDAYVPPEKIKLDFPNTTNDDVKIKAELSDDNSLNSYSYDEPVDRKNEIKIEFHSDGILKLEGEIPTRIFQKKNYIHANELNYKCDICTKLFTRTANLLRHMKKHAGGKNHKCGVCDKRFKTKQYLSKHVKSHGGETNYKCGICAKFFVTNGCLKRHVETHAGRKEFKCEICAKRFGSTQNMSAHMKTHGERNYKCETCDKCFGRNQHLLAHVKTHTGERNYECKICSKRFITKQRLATHVKFHTNERNYECAVCDKRFKTKQCMFQHVKLHNRGKDYECANCNKYFSTKQRVSMHMETHAGEKNYKCEICPKRFLTKGNLVKHVVTHTDDRNYQCVICNKFFKTKQYMLAHVKAHTAERNHKCDVCDKSFTTRRCLSRHADTHTSKKDHECKICNKRFKSSQYMSAHVKTHSAELNHECKVCRESFSSKQHMLAHVETHADERTHKCEICTKRFVTKQRLTTHMKFHSDERNYECALCDKRFKTKQCTRAHMKTHSGERNYKCATCDKFFTTKQYMLTHMQTHTGERNYGCDVCTKRFITKENLMKHVKTHTGDKNHACEICDKRFKSKQYMTAHVKTHVGERNYTCDVCAKCFTTKGCLTRHVKSHAGDKNYNCEICNKCFKSKQYMTAHVTTHTGERIHKCEICAKCFIIKGHLTKHMKSHASETN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-