Gspi031057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:475447-478659[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.2e-06 0.00015 23.0 2.9 1 23 162 184 162 184 0.99
2 18 3.7e-05 0.0026 19.1 3.6 1 23 190 212 190 212 0.98
3 18 0.00012 0.0082 17.6 2.9 1 23 218 240 218 240 0.99
4 18 7.9e-05 0.0056 18.1 2.6 1 23 246 268 246 268 0.99
5 18 8.3e-06 0.00059 21.2 4.2 1 23 274 296 274 296 0.99
6 18 3.8e-06 0.00027 22.3 1.6 1 23 302 324 302 324 0.98
7 18 3.6e-05 0.0025 19.2 3.7 1 23 330 352 330 352 0.98
8 18 9.6e-06 0.00068 21.0 4.3 1 23 358 380 358 380 0.99
9 18 0.00025 0.017 16.5 7.8 2 23 387 408 386 408 0.97
10 18 1.9e-06 0.00013 23.2 1.1 2 23 415 436 414 436 0.98
11 18 2.1e-06 0.00015 23.0 6.3 2 23 443 464 442 464 0.97
12 18 1.1e-05 0.00075 20.8 4.2 1 23 470 492 470 492 0.98
13 18 3e-05 0.0021 19.4 4.3 2 23 499 520 499 520 0.98
14 18 7.2e-05 0.0051 18.2 5.0 1 23 526 548 526 548 0.98
15 18 9.7e-06 0.00068 21.0 3.4 2 23 555 576 554 576 0.96
16 18 6.1e-05 0.0043 18.4 1.5 1 23 582 604 582 604 0.98
17 18 5.9e-06 0.00042 21.6 1.9 1 23 610 632 610 632 0.99
18 18 5.3e-06 0.00037 21.8 4.2 2 23 639 660 638 660 0.98

Sequence Information

Coding Sequence
ATGCCACCTATTGCGACACGCAAAGTCGCACACGGCCGAGAAGAAACTACACAAAGCAACACGACGAAAAACCCCTCGGCAAATGCAGATGATGGCAGCTTCGTCCTCGTCGAGGTGAAAGATGAAGTTACGGAATTTTTCGAAGTAAAAAATGAACCTGATCCCCTTGATACGCTCGTTGAAACGAAAGAGgccGAAATGGAAACTCACAGTTCCAATTTTGCAACGTCCGAGGTGAAACTCGAAGCGACCGAATTCTCAACGTTCATCCCGAAATTGCACTGTTTTTACGGATACCCCCACGTCGAAGTCAAGACACaaaatgcagaaaatttaaCGATAAAAGAAGAACAATACGTAAATGTCAACGCACCGACGATGCAAATAAAACTCGACGACGATTCACCGCGCGTTGCAGACATGAAAATCAAATCGGATCCCACCAACGATGAATCGATTAAGACGTCGATCggcgaaaaaaaatacaaatgcgaAACTTGCACCAAACGCTACACGCGAAAGCAAAATCTGATGCAACACATGAACGTGCACACCGGCGAgaaaaattacaagtgcgaaaCCTGCGCCAAATGTTTCACGAGGAAACAAAATCTCTTGCAGCACGCGAAAATACACACGCGCGAGAGGAACTTCAAATGCGAAAGTTGCACCAAACGGTTCACGAGCAGGCAGACGCTCGTGCAACACGTGAAGACGCACACCGGGGATCGAAACTACAAATGCGAGAGTTGCGCAAAACGCTTCACGAGCAAACAAAATCTCCTGCAGCACACGAAAATGCACACCGGCGAGAGAAACTACAAGTGCGAGCTCTGCACGAAGCGCTTCCGACGGAAGCACAATTTACTGGAACACCTGGAGACGCACAGCGGCGAGAGgaattacaagtgcgaaatttgcgcgaAACGCTTCACCACGAAGTACAATTTATTGCAACACGTCAAATTGCACACGGGCGAGAGGAACTACAAGTGCGACGTTTGCGGGAAATGCCTGACCAGGAAGACGTTCCTTTTGCAGCACATGAAGCTGCACACCGACGAGAGAgactacaaatgcgaaatttgcaccAAATGCTTCACAATCAAACAGAATTTACTGCAACACATGAAATCGCACATCAGCGAGAAAAACTGCAAGTGCACGATTTGCACGAAATGCTTCACGACGGAAAAGAAGCTCCTGCTCCACATGAAAACCCACACCGGCGAGAGAAACTCAAAGTGCGAGATTTGCGGAAAGAGCTTCTCGAGGAAGCAAACGATGCTCGACCACATGAAGATACACACGGTCGGGAGGAACTGCGAGTGCAAGATCTGCGGCAAGTGCTTCACGACGGAAAAAAATCTGTTCTTGCACATGAAGACCCACACCACCCAGagaaatcacaaatgcgaaatttgcgccaAGCGATTCTCGAGGAAGCAATATTTGTTACAACACATGAAGACGCACTCCGCCGAACGAAACCGCAAGTGCGACGTTTGCACCAAGTGTTTTACGTCCGAGCGAAATCTATCGCTGCACATGAAGACGCACACCGGCGAGGCGAACCACGAGTGCCAAATCTGCGCCAAACGCTTCATACGAAAGGAACATTTGTTGCGGCACACGAAaacgcacaccggcgagaaGAACTGCAAGTGCAAAATTTGCGGCAAGATTTTTACCACGAAAAAGAACCTGTCGCTTCACGTGAAGGAGCACACCGGCGAGGCGACTTACAAGTGCGAAATCTGCACCAATTACTTCACGAGGAAGGCGAATCTGTTGCAGCACTTGAAGTTGCACAGCGGCGAGAGGGATTACAAGTGCGACGTGTGCACTAAGAGCTTTACGATAAAACAGAATTTGTTGCAGCACTTGAAGACGCACAACGCCGAGAGAAATtccaagtgcgaaatttgcacgaaatgcTTCAAGTCCGATAGGAATCTGACGATACACATGAGAACTCACGCCGGTGGAATAAAGGAAAGAAAAGCGTCGGTTGATTGCGAGGAAATAAACGGTGGAGAAAGTGCGGAGGAAAAATTTCCTTGCGGCGTTGGCGAGATTGAAAAGGTTTTTATCAATGAGGAGATTGCCAAGTTtgtgaaggaagaaaaattggaGATTGACGTTGaTTCGATGGAAACAAAATTATCGTCAACGTATGAAAGTCACGTTGCAATCAAAGACGAGTCTAAATCCGCGGAAAATGTGAACGTATGGCAATTACCGACCAATGACATTGTAATCAAGAAAGAAGATTTTTCAACGACATAA
Protein Sequence
MPPIATRKVAHGREETTQSNTTKNPSANADDGSFVLVEVKDEVTEFFEVKNEPDPLDTLVETKEAEMETHSSNFATSEVKLEATEFSTFIPKLHCFYGYPHVEVKTQNAENLTIKEEQYVNVNAPTMQIKLDDDSPRVADMKIKSDPTNDESIKTSIGEKKYKCETCTKRYTRKQNLMQHMNVHTGEKNYKCETCAKCFTRKQNLLQHAKIHTRERNFKCESCTKRFTSRQTLVQHVKTHTGDRNYKCESCAKRFTSKQNLLQHTKMHTGERNYKCELCTKRFRRKHNLLEHLETHSGERNYKCEICAKRFTTKYNLLQHVKLHTGERNYKCDVCGKCLTRKTFLLQHMKLHTDERDYKCEICTKCFTIKQNLLQHMKSHISEKNCKCTICTKCFTTEKKLLLHMKTHTGERNSKCEICGKSFSRKQTMLDHMKIHTVGRNCECKICGKCFTTEKNLFLHMKTHTTQRNHKCEICAKRFSRKQYLLQHMKTHSAERNRKCDVCTKCFTSERNLSLHMKTHTGEANHECQICAKRFIRKEHLLRHTKTHTGEKNCKCKICGKIFTTKKNLSLHVKEHTGEATYKCEICTNYFTRKANLLQHLKLHSGERDYKCDVCTKSFTIKQNLLQHLKTHNAERNSKCEICTKCFKSDRNLTIHMRTHAGGIKERKASVDCEEINGGESAEEKFPCGVGEIEKVFINEEIAKFVKEEKLEIDVDSMETKLSSTYESHVAIKDESKSAENVNVWQLPTNDIVIKKEDFSTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-