Gspi031630.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:4248327-4253253[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 7.7 5.4e+02 2.4 2.7 2 21 103 121 103 123 0.84
2 29 0.0014 0.096 14.2 4.4 1 23 129 151 129 151 0.98
3 29 2e-06 0.00014 23.1 0.9 1 23 155 177 155 177 0.99
4 29 0.07 4.9 8.8 1.3 1 16 183 198 183 205 0.81
5 29 0.001 0.071 14.6 4.2 1 23 211 233 211 233 0.99
6 29 1.4e-05 0.001 20.4 5.6 1 23 239 261 239 261 0.98
7 29 1.1e-05 0.00079 20.8 0.8 1 23 267 289 267 289 0.99
8 29 0.43 30 6.3 4.7 1 23 295 317 295 317 0.98
9 29 1.2e-05 0.00087 20.6 4.6 1 23 323 345 323 345 0.98
10 29 1.7e-05 0.0012 20.2 1.1 1 23 351 373 351 373 0.99
11 29 9.3e-05 0.0066 17.9 4.3 1 23 379 401 379 401 0.99
12 29 4.5e-05 0.0032 18.9 3.9 1 23 407 429 407 429 0.98
13 29 0.00031 0.022 16.2 4.8 1 23 435 457 435 457 0.99
14 29 4.3e-06 0.00031 22.1 1.7 1 23 463 485 463 485 0.99
15 29 4.7e-05 0.0033 18.8 1.0 1 23 491 513 491 513 0.98
16 29 0.029 2 10.0 8.2 1 23 519 541 519 541 0.97
17 29 6.7e-05 0.0048 18.3 4.4 1 23 547 569 547 569 0.99
18 29 5.5e-05 0.0039 18.6 0.7 2 20 603 621 602 622 0.94
19 29 1.3e-05 0.0009 20.6 0.4 1 23 630 652 630 652 0.99
20 29 0.0002 0.014 16.8 0.6 1 23 658 680 658 680 0.98
21 29 1.3e-05 0.00088 20.6 3.1 1 23 686 708 686 708 0.98
22 29 0.00015 0.011 17.2 0.9 1 23 714 736 714 736 0.98
23 29 1.4e-05 0.00099 20.5 0.4 1 23 742 764 742 764 0.98
24 29 0.74 52 5.6 4.7 1 21 770 790 770 792 0.91
25 29 0.051 3.6 9.3 1.7 1 14 798 811 798 818 0.86
26 29 0.06 4.2 9.0 3.8 1 20 826 845 826 848 0.90
27 29 4.1e-05 0.0029 19.0 2.8 1 23 854 876 854 876 0.98
28 29 8.7e-06 0.00061 21.1 3.4 1 23 882 904 882 904 0.99
29 29 0.02 1.4 10.5 1.4 1 23 922 944 922 945 0.95

Sequence Information

Coding Sequence
ATGGTTATAAAGGAAGAAGGGTATGTAGAGGCTCGCGTACCAATGGTTGATAATGTTTCTAAAAAAGGAAATGCATATAATGATATCAAAATTAAGTTAGATCTTACTGATGAGAATGGTTGGTTTAACTCTTCGTGCAATAACAACCCAAGTCAAGAGGAAAACGAAAGCGAAAGTGGTTTGCAAGTACCGAAAATATGTCAAGTGGATAAAATTTGCGAGAATTCGACGCCAACCGAATTAACGAAGTGttcaaatgaagaaaataattgcgCGAATGTAAAAATGATGAAACCCAACGAACGACGGTGTAAAATTTGCTCAAAATATTTCAGAATTGCATATTTGCCGAGGCACATGAAGTGCCACAGCAAGCAAGAAAAACACCAATGCAAAATTTGCGCGAGCGTTTTTCGAAGAAAACACCGTCTGGTACGACACATGATAACCCACACGGACgaatacaaatgtgaaatttgcagcaaatcGTTAACGACAAAGGCAAATTTATCGCGTCACTTGAAAGTACACGCCGACAAgagaaattacaagtgcgaacTTTGCAGCAAATCCTTCGTGACGAAACAAGTTCTATCGTTTCACTCGGAAAGGCACACTCGTGAAAGAAACTACCAGTGTGGAACTTGCTCTAAATGCTTTAGCACGAAAGGTGATCTATCGTTTCACTTGAAAACGCACACCAGTGAAAAGAatcacaagtgcgaaatttgcaagaaaCGCTTCACGACAAAGCAGTATTTAATGAATCACTTGAAAACGCAcaccagaaaaaaaatttacaagtgcGAAACTTGCAATAAAAGCTTCGAAACGGAAGAAGTTCTATCGGTTCATATGAAAACGCACACTGGTGTAGGAAACTACAAGTGTAAAATATGCGCGACATGCTTCGCAGAAGAACGTCATTTAtcgtttcatttgaaaatgCACACCAGTGAAAAGAatcacaagtgcgaaatttgcacgaaatccTTTACGACGAAAAGATATCTATCGATCCACTTGAAAACGCACACCagcgaaaaaaattacaagtgcgaaaCTTGCAATAAAAGCTTCGAAACGGAAACAGTTCTATCGGTTCATATGAAAACGCACACTGGTGAAGGAAACTACAAGTGTGAAATGTGCGGGAAATGCTTCGTAGAAGAAACTCATTTATCGCTTCATTTGAAAAGGCACACCAGCGGAAAGAAccacaagtgcgaaatttgcacgaaacGCTTTACGATGAAGCAGTATTTATCGGCGCACTTGAGGACGCACAGCATCGACACAAATTACAAGTGCTACGTTTGCGCCAAATGCTTCAAAACGAGAAACACTCTATCAATTCACTTGAAAACCCACAGCCGCGAGAACgactacaaatgcgaaatttgcgccaAATCCTTCACCACGAAATATTACCTATCGATTCACTTGAAATCGCACAacgacgaaaaaaattacaaatgcgacgtttgcggTAAATCCTTTGTAAGAAAGCAAATTCTATCGACGCACCTGAAATCACACACCCGTGAAAAAAAACACCATTGCGGAGTTTGCGCCAAATCCTTTTCAATGGAACACTACTTATCGCACCACATGAAAACGCATTCGCGTGAAAGAAATTACGAGTGCGAGACGTGCTCGAAACGCTTCAGGGCGAAGCAGCACTTATCGAACCATATGAAAACGCACAcgcatgaaaaaaattacaaTTCTATTTCTCCTAATTTATCGAGCGAAAATATAGCAGCGTCAAAGAAATGCACGGAAACAAAGAACGCGACGGCACTCGAATGCGACATTTGCTTCAAGAGCTATAAAACGAGATCTAATTTAAAAAGACACAAGGCATGTCACGGTGaagaacaaaattacaaatgcaataTTTGCGCCAAAGACTTCAAAAGGAGCGACGGCCTCGTGGAGCACATCAAGCGTCACACGAAAGAACGAAACTACAAGTGCGACGTTTGCGACAAACGTTTCGTTACGAGAGGCGAGGCGGTGAAGCACAAGAAATTGCACAGCGACgagagaaattacaaatgcggaATTTGCACGAAGAGCTTCAAATCTAAGAGGACCATGACCGTACACATGAGGTTCCACACGACCGAGAGAAATCACAAATGCAACGTCTGTTCTAAAGCTTTTAAGGTGGCACGCGCCGTAAGAGTGCACATGCGGTTGCACTCCGACGAACGAAATTACAAGTGCGATGTCTGCTTGAAGGGTTTCAAGACGAAACGCGAGCTGGCGCAGCACATGATTGTCCACAGTGCAGAGAGGAAgcacaaatgcgacgtttgcagCAAGAGTTTTAAATTGAGACAGGTGATGATGCGGCACGAGAGATGCCACATCACCGCAAGACATCACAAATGTGACGTTTGCAGCAAGAGTTTTAAAAGGAAACACATTATGGTGGAGCACAAGaaatgtcacattactgaaAGGAATCACAAATGCGATGTTTGTTCGAAGAGTTTCAAAACGAGGAAAGCCGTTGTGGACCATGCGAAATGTCACATCACCGAGAGGAATTACAAATGCGAGGTTTGCACGATCAGATTTAAGACGAAAAAATATCTGGTTAAGCATATAAAATATCACACTGACGAAAAAAGCTACAAATGCAGTATGTGCACGATGAGTTTCACGAGGAAAAGATATTTGCTGGAGCACATGAAAACGCACATAGAGACAAATGTAAAGACTGGCCTAGAGGAGACTTCTGAACGCTTGAAGTTTGAATGTGAGAAATGTGGGACTGTGATCACCAGtaaaaacgttttaataaatcattttaagcAACATCATGAAGAAATAGCTGTACGAAAATTGTCGTACGACGTGAAGTCATGCGATGAAAAAACTATTGACGATAATGACATAAAGAGCGAAATTTTGGAAATCGACGTCGCAAATGATACAATGGGAAGTAATCTCTCGACGGCCACTAATGAATTTCACATTAAAGGACTACACAATCCTAGAGTAGTTTTAAATCAATTAGAGATATTTACCAGTGAGGTTGTAATTAAGGAAGAAACTATGGATATGTCATCATTAACGGACGATGTTGTTGTTGTCAAACAGGAAATTTCAAGCAACGACGATATTTACGTGAATAGCACGTTGGAGGGTGTTTTTATGAATATTCTTGACAAATTAGGTAATCACGCAAAAACTAATTAA
Protein Sequence
MVIKEEGYVEARVPMVDNVSKKGNAYNDIKIKLDLTDENGWFNSSCNNNPSQEENESESGLQVPKICQVDKICENSTPTELTKCSNEENNCANVKMMKPNERRCKICSKYFRIAYLPRHMKCHSKQEKHQCKICASVFRRKHRLVRHMITHTDEYKCEICSKSLTTKANLSRHLKVHADKRNYKCELCSKSFVTKQVLSFHSERHTRERNYQCGTCSKCFSTKGDLSFHLKTHTSEKNHKCEICKKRFTTKQYLMNHLKTHTRKKIYKCETCNKSFETEEVLSVHMKTHTGVGNYKCKICATCFAEERHLSFHLKMHTSEKNHKCEICTKSFTTKRYLSIHLKTHTSEKNYKCETCNKSFETETVLSVHMKTHTGEGNYKCEMCGKCFVEETHLSLHLKRHTSGKNHKCEICTKRFTMKQYLSAHLRTHSIDTNYKCYVCAKCFKTRNTLSIHLKTHSRENDYKCEICAKSFTTKYYLSIHLKSHNDEKNYKCDVCGKSFVRKQILSTHLKSHTREKKHHCGVCAKSFSMEHYLSHHMKTHSRERNYECETCSKRFRAKQHLSNHMKTHTHEKNYNSISPNLSSENIAASKKCTETKNATALECDICFKSYKTRSNLKRHKACHGEEQNYKCNICAKDFKRSDGLVEHIKRHTKERNYKCDVCDKRFVTRGEAVKHKKLHSDERNYKCGICTKSFKSKRTMTVHMRFHTTERNHKCNVCSKAFKVARAVRVHMRLHSDERNYKCDVCLKGFKTKRELAQHMIVHSAERKHKCDVCSKSFKLRQVMMRHERCHITARHHKCDVCSKSFKRKHIMVEHKKCHITERNHKCDVCSKSFKTRKAVVDHAKCHITERNYKCEVCTIRFKTKKYLVKHIKYHTDEKSYKCSMCTMSFTRKRYLLEHMKTHIETNVKTGLEETSERLKFECEKCGTVITSKNVLINHFKQHHEEIAVRKLSYDVKSCDEKTIDDNDIKSEILEIDVANDTMGSNLSTATNEFHIKGLHNPRVVLNQLEIFTSEVVIKEETMDMSSLTDDVVVVKQEISSNDDIYVNSTLEGVFMNILDKLGNHAKTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-