Gspi031582.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3869855-3874825[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 8.8e-05 0.0062 18.0 7.3 1 23 111 133 111 133 0.98
2 24 2e-06 0.00014 23.1 2.2 1 23 139 161 139 161 0.99
3 24 5.8e-05 0.0041 18.5 1.7 1 23 167 189 167 189 0.96
4 24 7.8e-06 0.00055 21.3 1.8 1 23 195 217 195 217 0.98
5 24 5.7e-05 0.004 18.5 1.7 1 23 223 245 223 245 0.97
6 24 1.1e-05 0.00079 20.8 3.2 1 23 251 273 251 273 0.99
7 24 6e-05 0.0043 18.5 3.0 1 23 279 301 279 301 0.98
8 24 1.1e-08 7.8e-07 30.2 3.0 1 23 307 329 307 329 0.99
9 24 8.7e-05 0.0062 18.0 7.0 1 23 335 357 335 357 0.99
10 24 4.9e-05 0.0034 18.8 1.4 1 23 363 385 363 385 0.98
11 24 7.8e-05 0.0055 18.1 3.6 1 23 391 413 391 413 0.99
12 24 0.00012 0.0086 17.5 5.1 1 23 419 441 419 441 0.98
13 24 2.4e-06 0.00017 22.9 2.5 1 23 447 469 447 469 0.99
14 24 2.7e-05 0.0019 19.5 2.3 1 23 475 497 475 497 0.98
15 24 1.5e-05 0.001 20.4 3.7 1 23 736 758 736 758 0.99
16 24 0.0053 0.37 12.4 8.3 1 23 764 786 764 786 0.96
17 24 0.00047 0.033 15.7 8.1 1 23 792 814 792 814 0.98
18 24 0.013 0.91 11.1 5.7 1 21 820 840 820 842 0.95
19 24 1.2e-05 0.00083 20.7 7.2 1 23 848 870 848 870 0.99
20 24 6.1e-07 4.3e-05 24.7 3.5 1 23 876 898 876 898 0.98
21 24 0.00041 0.029 15.9 1.8 1 23 904 926 904 926 0.99
22 24 0.00088 0.062 14.8 8.4 1 21 932 952 932 954 0.96
23 24 0.00022 0.015 16.7 5.2 1 23 960 982 960 982 0.98
24 24 0.07 4.9 8.8 1.5 1 14 988 1001 988 1002 0.91

Sequence Information

Coding Sequence
ATGGAAATCCACACACACGATTCAAATTCCACATCCGCCGAAGTAAAACCCGAACCAACAGAATTTGCAACATTTAACTTTGAACCACAGCCTTACTATGTCGAAGATAAGctcaaaaaagaagaaactcctgtTATGATAAAGAAAGAGGAGCGCGCCTTTGTACCGACTACAGAAATAAAACTCGACACAAACAGAGCGACGCAAACTATCTCAAACCCTGGAATTGCGTGCGatgacatcaaaataaaattggatcTCGGTGACGGGAATGATTTGCTGCAATTAGGTGccgaaattgaaaatcaaaaacgtaccaacgaacgaAATTATCATTgccaattttgcaataaatgcttCAGGACGAAGGAAAACCTATCGACTCACGTGAGAATACACACCGGCGAGAAAAATTACAAGTGTGAAACTTGCGGTAAACGCTTCACAGCGCAAAGCAATCTATTGACCCATAAGAAAACGCACACGGGCGAACGGAACTACAAATGTGAGATTTGCGACAAAAAATTTGTGACGAAACGAAATATGTTGTCGCACACGACGTTGCACACCGGCGAGAGGAACTAcgagtgcgaaatttgcaacaaacgcTTCAACGCAAAAGAGCATCTGTCGTCtcacatgaaaatacacaccggtgaaagaaattacaagtgcgagATTTGCACGAAACTCTTCACGACAAACAGCAGCCTGTTGACTCATAAGAAAGCGCACACTggcgaaagaaattataaatgcgacGTTTGTTCGAAACGCTTCACGACAAACGGCAGTCTATTCACGCACAAAAAAACGCACACCGGCGAACGAAACTTCAAGTGCGAGATTTGCACGAAACGCTGCACCACGAAAGGCAGCCTTTTGAGCCACATGACGGTGCACACCGGCGAGAAaaactacaaatgcgaaatttgcggcaAGTGTTTCACGACGAAAAGCAGTCTGCTGAGTCACATGCGGatacacaccggcgaaagaaactacaaatgcgaaACTTGCAAAAAGTGCTTCATAACGAAGCACAAGTTATCGAttcacatgaaaatacacaccggGGAGAGAAATCACAAGTGCGAGATATGCACGAAGGGCTTCGGGAGAAGAGACACGCTGTTGATTCATATGAAGCTGCACAACGACGAGCGAAATTACAAGTGCCAACTTTGCCCCAAATCCTTCAAACTGAAGGAGCATCTGTCGTCTCACACGAAGATACACACCGGGGAAAGGAatcacaagtgcgaaatttgctcGAAATCTTTCACGGCGAAGTGTAATCTGTCGTCTCACATGAAAATACATAccggtgaaaaaaattacaagtgtgaaatttgcgcgAAATGCTTCACGACAAACAGTAATCTATCGTCTCATGTGAAAATACACACAGGTGAAAGAAATTACAGGTGCGAAGTTTGTGCGAAATGCTTTGTAACGAAAAGCAGTCTGTTGAGCCACGTGAAAAGTCACACGGAAAATAGAAATGAATTGGATTGTAAGAACGATACACGCTTGGAAGAAAACACCGAGGAAGACCCGCAAAGTCCATATAAAATAGAGAGCATtggcaaaattgaaaaaggatTGATTAAGCAAGAGACGACGTTcataaaagaagaaaagttggaaaatgATAAAATGGAAACCAATTCCGCACATGGAACTTCTACCAATGGAGTATTTCTCGAAGTTAAACCGGAACCAACCGAGATTTCAAACATCGTTCAATTTCAATGTGCAACGGAACGACTTACGAGTGCCGAAGATGGAAATTTGTCGGTTACTGAATACGTGTTCATTCCAACGATTGAAGAAAATGTGCACGAAAATCAAAATGCCGTCTCAAACGGAAATGACGATGATGTTACCCCGATTTATATGTGTCCAGacaaaatgaaaactataaatGGAATCGAATCCAATGAAACGTTTCTAAAAGTAAAGCAAGAGCTAACTGACACTTTGaatgttgttgaaaatttgcCGATTAATGAATGTAAAGACGAAATATCCTCTTTTGCAAACATGATTATGGCCAAGGAAGAAAATTCGATATCTGCGTCAGTCGAAAATATGGTTTCATACGTAAATATCGAGAATTTTAAGTTAAGTGATTTGaatACTTCTAGTAAAGTCAATCCCAAACCGAGCGGACGTAAAAAATACACTCGCACCAAATCAAATTACACGTGTTCCATCTGCAATAAGAATTTCAAAACGACGTTCAACGTCACCAAACACATGAAATCCCACGTCGACGAGCGAAACCACAAGTGCTACGTTTGCAAGAAGCTGTTCAAAACGAAAGACCACCTGACGGACCACATGGACCACCACAACGACGAACGGAACCACAAGTGCGAGATTTGCTCGAAGACTTTCAAAACGAGACACCACGTCATCAACCACATGCAGTACCACGGCGATGAAAGAAGCCACAAATGCGATATTTGCGCCAAGACCTACAAGACGCGGTACGACATGCTGAAGCACATGAAGTGCCACACCGACCAGCGGAATTACAAGTGCGACGTCTGCGACAAAACCTTCAAAACCAAAGATCACAGGAAGCACCACATGAAGATACACACTGAGGAGAGGAACTACACGTGCGACGTTTGCGGCAAGAGTTACAAAACCAGGCACAATTTGCGGAACCACATGCTGTATCACAACAGCGAACGGAAATACAAATGCAATATTTGCATGAAGGGTTTCAAGACGAAGTACGACATGGTTAGCCATTTGAAGAGTCACACcgatgaaagaaattacaaatgcagtCTTTGCGACAAGTGTTTCAAGTCGCAGGACCACGTGGCGAAGCACATGAAATGTCACACCGCCGAGAGAAATCACAAATGTCACATTTGCGACAAGGGTTTTAAGGCGAAAAGCGACGTGCGCAAGCACTTGAAGTATCACACTATTGACAGGCGGTATAAGTGCAAAGTTTGTAGTAAAACTTTCGAGACGAAGGTAAATGGACCTCGTCGGACAAGGCAAACATGCTTAGAGTGTGAAATACTTTATCCGGATAAGAATCAAAAAGAAATTGTGATGGAACAATCGCTGGAAATTTTGTCCTCGCTCATATGTGACGGCGAATCGATTGAAGAAGTGGAAGTGAAAGAGTATAATGTGCAAATAAAGGAGGAAAATTTAGAGACGGACGAAGTCGATGGTTAA
Protein Sequence
MEIHTHDSNSTSAEVKPEPTEFATFNFEPQPYYVEDKLKKEETPVMIKKEERAFVPTTEIKLDTNRATQTISNPGIACDDIKIKLDLGDGNDLLQLGAEIENQKRTNERNYHCQFCNKCFRTKENLSTHVRIHTGEKNYKCETCGKRFTAQSNLLTHKKTHTGERNYKCEICDKKFVTKRNMLSHTTLHTGERNYECEICNKRFNAKEHLSSHMKIHTGERNYKCEICTKLFTTNSSLLTHKKAHTGERNYKCDVCSKRFTTNGSLFTHKKTHTGERNFKCEICTKRCTTKGSLLSHMTVHTGEKNYKCEICGKCFTTKSSLLSHMRIHTGERNYKCETCKKCFITKHKLSIHMKIHTGERNHKCEICTKGFGRRDTLLIHMKLHNDERNYKCQLCPKSFKLKEHLSSHTKIHTGERNHKCEICSKSFTAKCNLSSHMKIHTGEKNYKCEICAKCFTTNSNLSSHVKIHTGERNYRCEVCAKCFVTKSSLLSHVKSHTENRNELDCKNDTRLEENTEEDPQSPYKIESIGKIEKGLIKQETTFIKEEKLENDKMETNSAHGTSTNGVFLEVKPEPTEISNIVQFQCATERLTSAEDGNLSVTEYVFIPTIEENVHENQNAVSNGNDDDVTPIYMCPDKMKTINGIESNETFLKVKQELTDTLNVVENLPINECKDEISSFANMIMAKEENSISASVENMVSYVNIENFKLSDLNTSSKVNPKPSGRKKYTRTKSNYTCSICNKNFKTTFNVTKHMKSHVDERNHKCYVCKKLFKTKDHLTDHMDHHNDERNHKCEICSKTFKTRHHVINHMQYHGDERSHKCDICAKTYKTRYDMLKHMKCHTDQRNYKCDVCDKTFKTKDHRKHHMKIHTEERNYTCDVCGKSYKTRHNLRNHMLYHNSERKYKCNICMKGFKTKYDMVSHLKSHTDERNYKCSLCDKCFKSQDHVAKHMKCHTAERNHKCHICDKGFKAKSDVRKHLKYHTIDRRYKCKVCSKTFETKVNGPRRTRQTCLECEILYPDKNQKEIVMEQSLEILSSLICDGESIEEVEVKEYNVQIKEENLETDEVDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-