Gspi031245.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1477615-1482372[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.1e-05 0.005 18.2 1.9 1 23 65 87 65 87 0.97
2 26 2.1e-05 0.0015 19.9 2.5 1 23 93 115 93 115 0.98
3 26 0.0022 0.16 13.5 3.1 1 23 120 142 120 142 0.97
4 26 5.2e-05 0.0037 18.7 3.8 1 23 148 170 148 170 0.98
5 26 7.9e-06 0.00056 21.2 0.3 3 23 177 197 176 197 0.96
6 26 8.1e-06 0.00057 21.2 1.4 1 23 203 225 203 225 0.99
7 26 0.054 3.8 9.2 4.2 1 23 231 253 231 253 0.96
8 26 0.00042 0.029 15.8 3.0 1 23 259 281 259 281 0.98
9 26 1.6e-06 0.00012 23.4 3.6 1 23 287 309 287 309 0.98
10 26 0.00042 0.03 15.8 1.0 1 21 315 335 315 336 0.95
11 26 0.65 46 5.8 0.4 5 22 338 355 337 355 0.92
12 26 8.5e-06 0.0006 21.1 1.9 1 23 480 502 480 502 0.98
13 26 2.3e-06 0.00016 22.9 2.0 1 23 508 530 508 530 0.99
14 26 2.6e-06 0.00018 22.8 4.5 1 23 536 558 536 558 0.98
15 26 0.00023 0.016 16.6 1.5 1 23 564 586 564 586 0.97
16 26 9e-08 6.4e-06 27.4 2.8 2 23 593 614 592 614 0.98
17 26 5e-05 0.0035 18.7 4.2 1 23 620 642 620 642 0.98
18 26 1.7e-05 0.0012 20.2 0.7 1 23 648 670 648 670 0.98
19 26 4.4e-05 0.0031 18.9 3.5 2 23 677 698 676 698 0.96
20 26 0.0012 0.088 14.3 3.4 1 23 704 726 704 726 0.96
21 26 4.6e-06 0.00032 22.0 2.1 1 23 732 754 732 754 0.98
22 26 1.5e-05 0.001 20.4 1.6 1 23 760 782 760 782 0.98
23 26 2.3e-05 0.0016 19.8 5.2 1 23 788 810 788 810 0.98
24 26 0.00039 0.028 15.9 1.4 1 23 816 838 816 838 0.97
25 26 3.4e-05 0.0024 19.2 3.2 2 23 845 866 844 866 0.97
26 26 0.00053 0.038 15.5 1.3 1 21 872 892 872 893 0.94

Sequence Information

Coding Sequence
ATGGAATCTCCAACCTCGCTCTTAAAACCACGGTCCTGCCATGGACGTGACGTcgtaaaaaaagaagaatatgaaGCTCCTGATATATTTATTAGCGCACAACAAAATCTTTCGAACTACATCGAAATTAAATCTGGGGTCAGTGACGACAATGATTCGTCAAAGTTTTGCAACAAGGccgaacaaaataattacgaatgCGAAATATGCAAGAAGCGCTTCACGACGAAACGTTACATGTTGAAACACGTCGACATGCACAGCGGAAAAACCGaccataaatgtgaaatttgcaacaaacgcTTCGCGACGAAACAAAACTTAGACGTGCACGAAAAAACGCACACCGGCGAACGACACGAATGCGCTATTTGCAATAAACGCTTCTCGACGGAACGTTACAtgttaaaacattcaaaaatgcaCACCGGAAAGACGAACCACAAGTGCGAAACCTGCGACAAATACTTCACGACCAAACAGAACCTGGCCACGCACGAACaaacgcacaccggcgaaagacACGGGTGCGAAATTTGCGGCAAGTCCTTCACGACGAGGGAGAACATGAAGCGACACGTCGGGATACACGCCGGCGAACGGAACTACAAGTGCGAAATATGCGACGGATGCTTCGCGACGAAGTCCGACCTGACCGAGCACGTGAAGAGGCACGCCAGCGAAGTGTTGCACACGTGCGAGATTTGCAACAAGTGCTTCATGAGCGGGCAACGTCTGGCCAAGCACGAAACGACGCACACGGGCGAAAGGAATCACAAGTGCAAAATTTGCGGCAAACGCTTCCTGACGAAGTCGAGCATGCTGCAGCACTTGCAGGTGCACGCCGGCAGGCGAAatcacaaatgcgaaatttgcggcaGATGCTTCACGAGAAGGTCGAATTTGGGCGTGCACGTGAACacgcacaccggcgagagaAATTATAAGTGCGAATTTTGCGACAGACACTTCACAATGAGGACCAACCTGGCTGCGCACGTGAAgaacaaaatttgcaaacgaGGTTTCAGGAAAAGGAAACAATTTTTGGAACACGTGAAAACTGATATCGGACAAAGCAGGGAGGAAAAGCATGTATCAATAATTGCAacagaagaaatatatattgacGAACCATTAATTAAGGAAGAGACTGGTAAAATGGAGACTGACGTGAAAGATTCCAGCTACGTAATCTTCGAGGTAAAAACTGAATCTAAGGAATGTCCGACGTTATTGTCAAACGGACGTTTCCAATTAAAAACTGGCGTTACCATAAAGAAAGAAGAACATGAAGATCCTACATCTATCGGTGcaccacaaaacgtttcaaacattgaaattacacCTCACGATGTAAAAATCGAGTCAGATCTCGACGTCGACAACAATTCGTCAAACTCCAAACGAGAAATCGCAATCGCCGTCGAAAGAAACTTTAAATGCGAAACTTGCAATAAATCCTTCGCAAACAAACGTTACCTGACGCTACACGTCAAAATACACACGAGCGAACAAAACTAcgagtgcgaaatttgcgacaaacgcTCCACGACGAAAAAGAACTTCACCGCGCACATGAAAAGGCACGCCAGCGAGGGACTgcacaaatgcgaaatttgcaacaaatgcttcgcGACCAAATCGAATCTGGCGAATCACGGCAAaacgcacaccggcgagaaAAACCACAAATGTAAAATCTGCGCCAAATCGTTCGCGACCAACGATTACATGCTGAAGCACGCGAGGGCGCACACCGGATCGACGAAcaacaaatgcgaaatttgcgacaaatgcttcacGACGAAATCGAATTTGGCCGTACACATAAGAAAGCACACGGGCGAACGGAACCACAAGTGCGACATTTGCGACAAACGCTTCAAAACGAAGTATTACATGTTGGAGCACGTGAAGACGCACGCCGACGAACGAAACTACGAATGCGAAATATGCGGCAAGCACTTCGCGACGAGGACGGGTCTGGTGCTGCACGTGAAGAAGCACACCGGCGAAGGCAACTGCAGGTGTAAAATTTGCGACAAGAGTTTCTCGTCGAAGCAGTACATGTCGCAGCATATGATCGTGCACACCGGTCAAACGAaccacaaatgcgaaatttgcgacagACGCTTCGCGACGAGACATTACATGTTGAAACACGTGGGGATGCACTCGGGGAAAACTAAccataaatgcgaaatttgcgataAGTGCTTTGCGACGAGGGCGAGTTTGGTGGCGCACGCGAAAACGCACACAAGCGAGAGAAATTACGAATGCGAAGTTTGCGGGAAACGCTTCGCGACGAAGCACTACATGCTGAAACATGTCGAGACGCACACCGGGCGAACGAACCATAAGTGTGAAACTTGCGACAAATGTTTCGTGACGAAACAAAATCTAGCTAAACACGCGAAAATGCACGCCGGCGAAAGAAACTATAACTGTCGAATTTGCGATGAATCCTTCACATCGAAGACATTCATGTTGAGACACTTGAAAGCCCACGCTGGTGAACAAAGCCTCAGATGCGagttttgcaacaaatgcttcacaacgaaACCGAATCTGGATGTGCACATAAAAAGgcacaccggtgaaagaaattACGCGTGTGGAACTTGCAAGAAATGTTTCATCACAAAACAGGAACTATCGCAACACATACAAAGTCGCGGcggaaattgcaaagaaatttgCAATGGAACGGAAAAAAATCGACTGGATcataacaaaaattgcaaatgtacGACTTGCAAATGCACCTTGACTAAACAAGGTTTCCTACGGCACAccagaaaaagaaacaaacgttTCAGAAAAGGAAAAGATTTTTTGGAACATATTAAAGCAGACCCTGGACAAGGCGGCGAGGAAGagtcttttcaaaaatttccttgcATCGCACCAACAATTACACCagaaaaagtatatattgaGGAACCTTTACTTAAGGAAGAGACTGACGCTGAAAGAAAATCACTGGctgcaaatgaaatttttattaatgccaTTAAGAAGGATGATCCTGAATCGAcggatattttaaacttttaccaAACCCTGCACAGTGAGGTTATAATCAAGGAAGAGCACGCGTTGGCGACGTCATAA
Protein Sequence
MESPTSLLKPRSCHGRDVVKKEEYEAPDIFISAQQNLSNYIEIKSGVSDDNDSSKFCNKAEQNNYECEICKKRFTTKRYMLKHVDMHSGKTDHKCEICNKRFATKQNLDVHEKTHTGERHECAICNKRFSTERYMLKHSKMHTGKTNHKCETCDKYFTTKQNLATHEQTHTGERHGCEICGKSFTTRENMKRHVGIHAGERNYKCEICDGCFATKSDLTEHVKRHASEVLHTCEICNKCFMSGQRLAKHETTHTGERNHKCKICGKRFLTKSSMLQHLQVHAGRRNHKCEICGRCFTRRSNLGVHVNTHTGERNYKCEFCDRHFTMRTNLAAHVKNKICKRGFRKRKQFLEHVKTDIGQSREEKHVSIIATEEIYIDEPLIKEETGKMETDVKDSSYVIFEVKTESKECPTLLSNGRFQLKTGVTIKKEEHEDPTSIGAPQNVSNIEITPHDVKIESDLDVDNNSSNSKREIAIAVERNFKCETCNKSFANKRYLTLHVKIHTSEQNYECEICDKRSTTKKNFTAHMKRHASEGLHKCEICNKCFATKSNLANHGKTHTGEKNHKCKICAKSFATNDYMLKHARAHTGSTNNKCEICDKCFTTKSNLAVHIRKHTGERNHKCDICDKRFKTKYYMLEHVKTHADERNYECEICGKHFATRTGLVLHVKKHTGEGNCRCKICDKSFSSKQYMSQHMIVHTGQTNHKCEICDRRFATRHYMLKHVGMHSGKTNHKCEICDKCFATRASLVAHAKTHTSERNYECEVCGKRFATKHYMLKHVETHTGRTNHKCETCDKCFVTKQNLAKHAKMHAGERNYNCRICDESFTSKTFMLRHLKAHAGEQSLRCEFCNKCFTTKPNLDVHIKRHTGERNYACGTCKKCFITKQELSQHIQSRGGNCKEICNGTEKNRLDHNKNCKCTTCKCTLTKQGFLRHTRKRNKRFRKGKDFLEHIKADPGQGGEEESFQKFPCIAPTITPEKVYIEEPLLKEETDAERKSLAANEIFINAIKKDDPESTDILNFYQTLHSEVIIKEEHALATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-