Gspi029542.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390739.1:15589249-15596851[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00041 0.029 15.8 1.0 1 23 7 30 7 30 0.95
2 25 0.0043 0.3 12.6 2.5 1 23 36 58 36 58 0.96
3 25 0.0042 0.3 12.7 3.0 1 23 64 87 64 87 0.92
4 25 4.7e-06 0.00033 21.9 2.9 1 23 92 114 92 114 0.98
5 25 1.9e-06 0.00014 23.2 0.5 1 23 123 145 123 145 0.98
6 25 4.1e-07 2.9e-05 25.3 0.2 1 23 150 172 150 172 0.98
7 25 1.7e-06 0.00012 23.3 0.7 1 23 178 200 178 200 0.98
8 25 4.8e-06 0.00034 21.9 1.3 1 22 206 227 206 227 0.96
9 25 8.7e-05 0.0061 18.0 0.1 3 20 239 256 237 257 0.93
10 25 0.0037 0.26 12.9 0.6 2 23 266 287 265 287 0.96
11 25 0.018 1.3 10.7 1.8 1 23 293 316 293 316 0.95
12 25 0.0016 0.12 14.0 0.7 1 23 321 343 321 343 0.97
13 25 2e-05 0.0014 20.0 0.1 1 23 351 374 351 374 0.97
14 25 1.6e-05 0.0011 20.3 1.0 1 23 379 401 379 401 0.98
15 25 0.00015 0.01 17.2 1.7 1 23 407 429 407 429 0.96
16 25 0.003 0.21 13.1 3.7 1 23 452 474 452 474 0.98
17 25 0.0003 0.021 16.3 0.1 2 23 480 502 479 502 0.93
18 25 1.7e-05 0.0012 20.2 0.1 1 23 506 528 506 528 0.98
19 25 0.00075 0.053 15.0 0.7 1 23 534 557 534 557 0.95
20 25 1.3 93 4.8 4.0 1 23 562 584 558 584 0.91
21 25 5.1e-07 3.6e-05 25.0 0.1 1 23 590 613 590 613 0.98
22 25 1.2e-06 8.5e-05 23.8 0.6 1 23 618 640 618 640 0.99
23 25 0.0014 0.1 14.1 0.9 1 23 646 668 646 668 0.92
24 25 1.5e-06 0.00011 23.5 1.2 3 23 676 696 674 696 0.97
25 25 0.0014 0.099 14.2 4.0 1 23 702 724 702 724 0.98

Sequence Information

Coding Sequence
ATGCACACTGAGAAGTCGTTCGCTTGCGACGCATGCGGGAAAAGGTTCAGAAGGAATTACCAGGTGAAGGTGCACTTTGAAACGTACCATTCGAAAGAGCGCGCGTTCAATTGCGAAGCCTGTGGGAAAGTGTTTCACACGAGGCAGCTGCTCAAGTACCACAAAGCGAGACACATAAAAGATTTCAAGCACAAGTGCGACCAGTGCGAAAAGGGTTTTTACAACACGAGCGACTTTAAGTCGCATTACGCCGGCAAGCACAAGGGCATAAGATTCGTATGTACCACCTGCAATAAAACATTCATAAACGAAAGTTACTTTAAACGACACGTTAAAACGCACGATAGCGAGTACGTTAAGTTGGATTACACGTGTTCTGAATGCGGCAAGGTGTACACCAGCAAAGGAGGTTTGAACGTCCATAAGAAATCACATAACAATGTGTTGTACGTCTGCGATATTTGCGGGAAGTCCGTTACCACCAATACGAGTTTAAATAATCATATGATGATACACAGGGGCGAGAGGCCTTTTGTTTGTGAAACTTGCGGTAAGACTTTCAATCGGAAAATGTTACTGAGGATACATGAGAGGGTGCACACGAAAAGTAAGCCATACGTATGCGTACATTGCCAAAAGAATTTCAGTCAACGCAGCACACTTAATATACATATGAGaTCGCAGCGATCGATAATTCCCGATAAAATATTGGCATGTGATGTGTGCGACAAAAGGTTCAAACGACGGGGCGAATTAAAGGCACATGTTGAATGCTGCCACGTCAAAAGGCGGCTGAAATGTAAACTGTGCTCGGAGGAATTTATCTATAAAAGGTCGCTCCAAGTTCACGAAGCAAAGCACGTGAAGGATTTCAAACATAAATGTGATGCGTGCGATAGGAGTTTTTATTCCACAGGCGGTTTCAAATCGCACTACGCCATAAAACACATGGGATTAAATTTCACGTGCGCCGTTTGCGGCAAAACTTTCCTGCAGGAGGGCTATTACAAACGCCACGTGAAAGATCACAATTTGGGTTGCGTCAAGGAATACAAATGCCCCGCATGCGACAAGGTTTACACGAGCTGGGGCGGTTTGAACACTCACAAGAAGATCGCCCATAACAACTTGATGTACGTATGTGACGTTTGTGGGAAATCAGTGACGAGTTTCGACAGTCTGAAACACCACAGGATGATTCACACCGGCGAGAAGCCTTTCGTTTGTGATGCTTGcggaaaatgtttcaataagaAGCAATTGCTTAAAACGCATTTGGTGGTGCATACGAAACTTAAGCCCTTTGCGTGCACACGATCGCGTGATTCGAAGATCGAAGATGGAAAACTGGAGTACAAGTGCAGGATATGTTTCAAAGAATTTGTATCAATGTTCCATCTAAAAAACCATAGCATGGTGCACGGGTATAAAACGGTTCCTTGCGGCATGTGCGACAAAACTTACAAATATCTGACGGAGCTACAGCGACACGTTGCCGTTTCCCACAGGCCCCGATTTAAATGCGAACTCTGCGAAGAAGAATTCGTTCGTCAATCGTCACTCCAAGCGCACGTCGCGAGGCACATAGACAAATTTATGCACGCGTGCGACAAGTGCGATAAAGTGTTTTATACGGACCCTTCGTTTAAGGCACACTACGCGACAGCCCACAAGTGTCGCAagtttatttgtatcatttgcaCTAAGAGCTTCCTGCACGAAGGCAATTACAAAGTCCATGTGCAAAGACACGAGAAACGCGTCGCATATACGTGCCCAGAGTGCGGTAAGATTTATAGCAGCTGGGGCGGGCTACGCGTCCATCGAAAGACTGCCCATAGAAATTTATTATACGTTTGTGACGTTTGCGGAAAATCCGTCACTAGCTTAAGTAGCCTGAAGTCCCATAAGAGAACACACACTGGAGAAAAGCCCTTCGTCTGTGAAAAATGCGGAAAGCGTTTCAAtacgaaaaacattttaaacaccCATTCAGTAATGCACACGAAGCTCAAACCTTACGGCTGCTCAACGTGTCAAAAAGCTTTCACACAAAAAAGCAGTTTGAATGTGCACATGAGATATCATACAGGAGATCGACCGCACAAATGTAACATATGCATGAAAAATTTTGTGACGAAGACGTTGCTGAAAACCCACACCAAAATACATGGGGTTGCTTTAGCCGACATGCTGAAAACTAGATCGTAG
Protein Sequence
MHTEKSFACDACGKRFRRNYQVKVHFETYHSKERAFNCEACGKVFHTRQLLKYHKARHIKDFKHKCDQCEKGFYNTSDFKSHYAGKHKGIRFVCTTCNKTFINESYFKRHVKTHDSEYVKLDYTCSECGKVYTSKGGLNVHKKSHNNVLYVCDICGKSVTTNTSLNNHMMIHRGERPFVCETCGKTFNRKMLLRIHERVHTKSKPYVCVHCQKNFSQRSTLNIHMRSQRSIIPDKILACDVCDKRFKRRGELKAHVECCHVKRRLKCKLCSEEFIYKRSLQVHEAKHVKDFKHKCDACDRSFYSTGGFKSHYAIKHMGLNFTCAVCGKTFLQEGYYKRHVKDHNLGCVKEYKCPACDKVYTSWGGLNTHKKIAHNNLMYVCDVCGKSVTSFDSLKHHRMIHTGEKPFVCDACGKCFNKKQLLKTHLVVHTKLKPFACTRSRDSKIEDGKLEYKCRICFKEFVSMFHLKNHSMVHGYKTVPCGMCDKTYKYLTELQRHVAVSHRPRFKCELCEEEFVRQSSLQAHVARHIDKFMHACDKCDKVFYTDPSFKAHYATAHKCRKFICIICTKSFLHEGNYKVHVQRHEKRVAYTCPECGKIYSSWGGLRVHRKTAHRNLLYVCDVCGKSVTSLSSLKSHKRTHTGEKPFVCEKCGKRFNTKNILNTHSVMHTKLKPYGCSTCQKAFTQKSSLNVHMRYHTGDRPHKCNICMKNFVTKTLLKTHTKIHGVALADMLKTRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-