Gspi032302.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:12930988-12939370[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00035 0.025 16.0 3.1 1 23 112 134 112 134 0.99
2 28 5.5e-05 0.0039 18.6 2.5 1 23 140 162 140 162 0.98
3 28 2.6e-05 0.0018 19.6 1.2 1 23 168 190 168 190 0.99
4 28 1.7e-05 0.0012 20.2 4.0 1 23 196 218 196 218 0.99
5 28 7.4e-06 0.00052 21.3 7.1 1 23 224 246 224 246 0.98
6 28 0.00088 0.062 14.8 4.9 1 23 252 274 252 274 0.98
7 28 0.00025 0.018 16.5 3.5 1 23 280 302 280 302 0.99
8 28 1.3e-05 0.00095 20.5 1.8 1 23 308 330 308 330 0.99
9 28 0.0007 0.049 15.1 0.3 1 23 336 358 336 358 0.98
10 28 0.0019 0.13 13.8 2.0 1 23 364 386 364 386 0.98
11 28 1.4e-06 0.0001 23.6 3.9 1 23 392 414 392 414 0.98
12 28 3.2e-05 0.0022 19.3 0.2 1 23 420 442 420 442 0.99
13 28 0.00014 0.01 17.3 0.7 1 23 448 470 448 470 0.98
14 28 2.8e-05 0.002 19.5 3.4 1 23 476 498 476 498 0.99
15 28 0.37 26 6.5 0.9 1 20 504 523 504 525 0.94
16 28 0.023 1.6 10.4 4.0 1 23 651 673 651 673 0.96
17 28 0.00022 0.016 16.7 1.0 1 23 679 701 679 701 0.98
18 28 0.00016 0.011 17.1 6.6 1 23 707 729 707 729 0.99
19 28 0.00013 0.0091 17.4 1.0 1 23 735 757 735 757 0.99
20 28 4.4e-05 0.0031 18.9 2.4 1 23 763 785 763 785 0.98
21 28 9.2e-06 0.00065 21.0 1.0 1 23 791 813 791 813 0.99
22 28 0.00042 0.03 15.8 3.5 1 23 819 841 819 841 0.98
23 28 0.0082 0.58 11.8 4.2 1 23 847 869 847 869 0.98
24 28 9.4e-07 6.6e-05 24.2 1.9 1 23 875 897 875 897 0.99
25 28 4.5e-06 0.00032 22.0 2.4 1 23 903 925 903 925 0.98
26 28 0.00022 0.016 16.7 0.5 1 23 931 953 931 953 0.95
27 28 3.2e-05 0.0022 19.3 2.4 1 23 959 981 959 981 0.99
28 28 0.0021 0.15 13.6 3.4 1 23 987 1009 987 1009 0.98

Sequence Information

Coding Sequence
ATGGAGGATGTTGGAAACGATTCCAAGTGTTTAATCATCGGAGTGAAAGCTGAATCAATTGGGTGTCCAAAGTTATCCCCTAAACTGCAGCCTTATTTCGTtgaaattaacaagaaaaacgcAGAATGTGCCGTTGCTGTAAAGAAAGAAGAATATGAAGATGATGTGGCGATGACTTCAATAACACAGCATTTCGTTGGCATACAATACGtcacaaatgaaatttcacctgatgttaaaattaaattagatattaGTGATGATATGAAATCTGGTAGCAAGAAAGAGCAAAATGAAACATCAATTGATAGGACGATGCATGGCAATAAGGGATACAAGTGTAAAATTTGCTGGAAACATTTCAGAACGAGAAATATTCTTTGGAGTCACATGAAAATACATACCGACGAAAGGAATTATAAATGCGACATATGCAGCAAACGATTCACAACGAAACGATACATGTTACGGCACGTCAAAGCTCATGTCGGCGAAAGAAAGTACAAATGTGAACTTTGCACGAAACGCTTCGTAACGAACCAAGTTTTGTTGCGGCACATGAAAATACACTCGGACGAACGAAACTACAAATGCAAAACTTGCAATAAGCGCTTCATAACGAAACAAAACATGTTGCGGCACGTGAAGACGCACACGGGCGAAAGAAATCATAAATGCAAAATCTGCGAGAAATCCTTCTCGACGAAGCATTATCTGTTGAAACACGTCAGAACGCACAACGGGGAAAGAAATCATAAATGCGGCGTCTGCAACAAGTGCTTCAAAACGAAAGAATACGTGCTGCAACACGTTAAGATTCACACGGACGAACAGaactacaaatgcgaaatttgcaacaaatgcttcacaaccgGCCAACTCATGTTGCGACACGTCAAGAGACACACCGACGAACACAactacaaatgcgacgtttgcaaTAAAACGTTCGCCGCGAAGCAATATCTATCAAAACATCTCAAAACGCACACCGGAGAAACGAATTataaatgcgacgtttgcgaTAAAAGCATCGCGACGAAACAATACCTGTCGGAACACGTGAAAGCGCACACCGGCGAACGAAACTACAAATGCGGAACTTGCAACAAACGCTTCGCGATCAAAAAATCGATGTTGCGGCACGCGAAGAGGCACAACGACGAAGAAATCcacaaatgcgaagtttgcgGCAAGCGCTTCGCCACGAAGCAATATTTAACGAAACATCTCAAAACACACACCGGCGAacgaaactacaaatgtgatgTCTGCGACAAAGGCTTAACGACGAAGCAGAACCTCGCCGTTCACGTGAAAATACACACCGACGAAAGGAACTACGAATGCGAGGTTTGCAAGAAACGCTTCTCGACGAAGCGCTGGATGTTGGCGCACGCAACAACGCACAGCGGCGAGGGAAATTATCGGTGCGAAATTTGCGAGAAGCGCAGCTCGACGAAGGGATGTCTGCTGCGGCACATGAAAACGCACGACGGAGACGCtaactacaaatgtgaaatttgcaatcaGGACTTAAAGAAACGAAAACTGTTTTTAGAACATTTATTTAAGTTTTACGCCGATGAAATGGAGACTGATTCTACCTGCATCGTCGAAGTAAAAACCGAATCACCAGAATATTCAACTTTATCCCAAAAATTACAATCTTGTTATTCATACGTAAAGATTGAGCACAAATCAACCGAATGTGGTGTTGGTGTAAAGAAAGAAGAATGTGAAGATGCTTCTGCACCGATGGCGATAACACTGAGTACCATTGATGCAGCACAAAACGTATCAAACGGTGTAACTCCACCTAACAACATCGCAATTAATAAATCCGAGTCGGCTGAACAAGGTATTGAGCACGAAGgAAAAGGACTTCTTTCAAGTCCTACTATCGATGAaacaaactataaatatttcactacgttggaagaaaaaaattacaaatgtgataCATGCAACGAATGCTTCACAACGAAGAAAGACGAGTTACAACACGCGAAAACCCACGCCGTCGCtagaaactacaaatgcgaagtttgcgCAAAGCGCTTTGCAACCAAAAGGTATCTAACTTTACACGCGAAACTGCACACCGGCGaacgaaattacaaatgcgagagttgcgacaaatgcttcacaagaaAAAGCCACATATTGCAGCACGCGAAGACGCACACCGAAAAAACAGAGTACCAGTGCGAAATTTGCAGCAAGTACTTCACAATGAAGGAATACGTTGTCGCGCACATGAAAAGGCACAccaacgaaaaaaattacgaatgcgaaatttgcaacaaatgcttcacaaccaACCAGCTCATGCTGCGACACGTCGAAAGGCACACCGGGGAACAGAactacaaatgcgacgtttgcaaTAAAAGCTTCGCGGCGAAGGAATATTTATCGAAACACGTCAAGACGCACTCCAGCGAACGGATCTATAACTGCGacatttgcaataaatgcatCACGACGCAGTATTACATGTCGGAACACATGAAAACGCACACCGGCGaacgaaattacaaatgcgagaCTTGCGACAAACGCTTCGCGATAAAAAAATGCATGTTGCGGCACGCGAAGAGGCACAACGACAAACAAGTGTATAAGTGCGGGATTTGCGGCAAGTGCTTCGCGACGAAAGAATATCTATCGAAACACGTCGAAACGCACTCTGGTgaacgaaattataaatgcgacGTTTGTGGCAAGTCCTGCACGACGAAGCAGAGTCTCGTACGGCACCTGAAAGCGCACAGCAATGAGAGAAATTacgaatgtgaaatttgcaagaaacgCTTCTCGACGAAACGTTGGATGTTGACGCACGTAGAAGCGCACGCCGCCGAAGGAGATTTTCGttgtgaaatttgcgacaaacgcAGCTCGACGAAGCGGTACTTATTGCAACACTTGAAAACCCACACCAGTGAAAGgaactacaaatgtgaaatttgcaatcaATGTTTCAATAAACGAAAAGTGTTTTTAGAACATATGGAAATGCACCCTGAAGGAAGAGGTGGGGCAGAGTCTATTCGAAATTTCGTATTAACGactaaaatagaagaaattagcACGATCGATGAACCATTGATTAAGGAAGAAATTGGAACGATTGTGAAGAATGACAGTTTGGGCACTAACTATGATACGGTTGAAATGAATGAAAGCATTTGTGCTGCTGTTAAGGAGGAGGAACCCAAATCAACGGAAATTTTAGGTTTGTGGCCAACACTCGATAACGAGATTATAATCAAAGAAGAACACACAATGGGTACCTAA
Protein Sequence
MEDVGNDSKCLIIGVKAESIGCPKLSPKLQPYFVEINKKNAECAVAVKKEEYEDDVAMTSITQHFVGIQYVTNEISPDVKIKLDISDDMKSGSKKEQNETSIDRTMHGNKGYKCKICWKHFRTRNILWSHMKIHTDERNYKCDICSKRFTTKRYMLRHVKAHVGERKYKCELCTKRFVTNQVLLRHMKIHSDERNYKCKTCNKRFITKQNMLRHVKTHTGERNHKCKICEKSFSTKHYLLKHVRTHNGERNHKCGVCNKCFKTKEYVLQHVKIHTDEQNYKCEICNKCFTTGQLMLRHVKRHTDEHNYKCDVCNKTFAAKQYLSKHLKTHTGETNYKCDVCDKSIATKQYLSEHVKAHTGERNYKCGTCNKRFAIKKSMLRHAKRHNDEEIHKCEVCGKRFATKQYLTKHLKTHTGERNYKCDVCDKGLTTKQNLAVHVKIHTDERNYECEVCKKRFSTKRWMLAHATTHSGEGNYRCEICEKRSSTKGCLLRHMKTHDGDANYKCEICNQDLKKRKLFLEHLFKFYADEMETDSTCIVEVKTESPEYSTLSQKLQSCYSYVKIEHKSTECGVGVKKEECEDASAPMAITLSTIDAAQNVSNGVTPPNNIAINKSESAEQGIEHEGKGLLSSPTIDETNYKYFTTLEEKNYKCDTCNECFTTKKDELQHAKTHAVARNYKCEVCAKRFATKRYLTLHAKLHTGERNYKCESCDKCFTRKSHILQHAKTHTEKTEYQCEICSKYFTMKEYVVAHMKRHTNEKNYECEICNKCFTTNQLMLRHVERHTGEQNYKCDVCNKSFAAKEYLSKHVKTHSSERIYNCDICNKCITTQYYMSEHMKTHTGERNYKCETCDKRFAIKKCMLRHAKRHNDKQVYKCGICGKCFATKEYLSKHVETHSGERNYKCDVCGKSCTTKQSLVRHLKAHSNERNYECEICKKRFSTKRWMLTHVEAHAAEGDFRCEICDKRSSTKRYLLQHLKTHTSERNYKCEICNQCFNKRKVFLEHMEMHPEGRGGAESIRNFVLTTKIEEISTIDEPLIKEEIGTIVKNDSLGTNYDTVEMNESICAAVKEEEPKSTEILGLWPTLDNEIIIKEEHTMGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-