Gspi031611.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3987173-4000025[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0017 0.12 13.9 4.4 1 23 84 106 84 106 0.99
2 30 0.00033 0.023 16.2 9.5 1 23 112 134 112 134 0.98
3 30 0.00014 0.0098 17.3 1.0 1 23 140 162 140 162 0.99
4 30 0.0017 0.12 13.9 1.6 1 23 168 190 168 190 0.99
5 30 0.003 0.21 13.1 0.5 1 23 196 218 196 218 0.98
6 30 0.00016 0.011 17.1 2.6 1 23 224 246 224 246 0.99
7 30 0.00014 0.0099 17.3 0.8 1 23 252 274 252 274 0.99
8 30 0.00097 0.068 14.7 3.4 1 23 280 302 280 302 0.97
9 30 0.0014 0.098 14.2 3.3 1 23 308 330 308 330 0.98
10 30 7e-06 0.0005 21.4 2.8 1 23 336 358 336 358 0.98
11 30 0.00015 0.01 17.2 3.1 1 23 395 417 395 417 0.99
12 30 3.8e-05 0.0027 19.1 2.3 1 23 423 445 423 445 0.99
13 30 0.00018 0.012 17.0 2.8 1 23 451 473 451 473 0.98
14 30 0.014 0.97 11.0 3.4 1 23 479 501 479 501 0.98
15 30 1.7e-06 0.00012 23.3 2.8 1 23 507 529 507 529 0.97
16 30 0.00038 0.027 16.0 0.7 1 23 535 557 535 557 0.99
17 30 0.00036 0.026 16.0 3.9 1 23 563 585 563 585 0.98
18 30 1.6e-05 0.0011 20.3 6.5 1 23 591 613 591 613 0.99
19 30 0.025 1.8 10.2 1.6 1 23 618 640 618 640 0.99
20 30 1.1e-05 0.00076 20.8 3.1 1 23 765 787 765 787 0.98
21 30 3.6e-05 0.0026 19.2 3.8 1 23 938 960 938 960 0.98
22 30 2.6e-05 0.0018 19.6 2.1 1 23 966 988 966 988 0.99
23 30 0.00028 0.02 16.4 4.5 1 23 994 1016 994 1016 0.99
24 30 0.00046 0.033 15.7 0.6 1 23 1022 1044 1022 1044 0.98
25 30 3.3e-06 0.00023 22.4 1.9 1 23 1049 1071 1049 1071 0.98
26 30 1.9e-05 0.0014 20.0 4.8 1 23 1077 1099 1077 1099 0.99
27 30 0.00017 0.012 17.0 0.9 1 23 1105 1127 1105 1127 0.98
28 30 0.00097 0.069 14.7 1.3 1 23 1133 1155 1133 1155 0.98
29 30 8.2e-06 0.00058 21.2 0.9 1 23 1160 1182 1160 1182 0.99
30 30 0.022 1.5 10.4 1.1 1 23 1188 1210 1188 1210 0.99

Sequence Information

Coding Sequence
ATGAAGTCTGCTATAAGTGATTCTAATGCCACAAACGTCGAAGTAATACCTGTACCCATAGAATTTACAACGTTAATCACAAAACCAGAGCCTTGCAGTGAATATCCTGTTGGAGTTGATACCAATGCAGGAAACGCAGTTACGATAAAAGAAGAGAAATATGACCCAGATGAATCGAAGTACTCACGTGCAACTGGTCTTGAAGCATCATGTGAAAATATCGCAAAAACTATATTACAGCAAACAAACttcaagtgtgaaatttgcacgaGGTGTTTGACgacgaaacaaattttaaaacgacACATGCAAACACACGCCACCAACATAAACCACAAATGCAAACTTTGCTCGAAATGTTTCCGAACGAAACGCAATCTACTgcaacatacgaaaacacacAGCGACGAAAAGAACTACAAATGCGACGTATGCGCCAAACgcttcaaaataaaaaagagtTTAGGTCAACACATGCGAATACACACggacgaaagaaattacaaatgtgaagtttgcgcGAAACGTTTCACGACGAAAGACGTCCAGTCGCAACACTTGAAAACGCACACGACCGAGAGGAACCACGAGTGCGAGATCTGCGCGAAACGCTTCGGGGCGCGGGTGTACCTGCTGaaccacatgaaaatacacGCCAGGGAACGAAAGTacgaatgtgaaatttgcaccaaGCGCTTCAAAACCAAAGAAGTTCGATCGAAACACATGAAAACGCACAGCAACGAGCGGAAGTATAGATGTGAAATTTGCGCGAAAAACTTTACGATGAAGAATACCCTGGCGAACCACGTGAAGACGCACGCCGACGtgagaaattacaaatgcgaagtttgcgCGAAATGCTTCAAAACGGCGAGCAGTCTTTGGTGCCATATGAATGCACATGCTATCGAacgaaactacaaatgtgaaatttgcgcgAAATGTTTCAAGACTAGAGATATTTTGTCGAAACACACGAAGATACACACTGACGTGAGGGATCACGAATGCGCAATTTGCAATAAACGTTTTACGACGAAGAAAAATCTTTCGGTGCATGTGAAGACGCACCGCAATGGAATTAaatacaagtgtgaaatttgcgacCGAAACGAAGCCTGTGAACATTGCCTCTCAGTAAAAAATCAATGGGAACATACGAAAATCCAGGAAACAAACTTCAAGTGCGACCTCTGCACGAAACGTTTCACAACAAGACAAATCTTAAAGCGACACATGAAAATCCACAccaacaacaaatcgtacaaatgcgaaatttgctcCAAATGTTTCGCGGCGAACCGCAATTTACTGCAACATTTGAAAATGCACAGCAgcgaaagaaatcacaaatgtgaaatttgcgccAAACGTTTCACAACGAAAGAAATTCTACTGCGCCACATGAAAACGCACACCGACGGCAAGAACTACAGGTGCGAAGTCTGCATGAAATGCTTCACCACGAAGCAAATCTTGTCGCGACACATGACTATTCACACTGGCGAGAGGAACTacgaatgcgaaatttgcaccAAGTGCTTCACGACCAAGGATAATCTGTCGAAACACGTCAAGGCGCACAccgacgaaagaaattacaaatgcgagatttgcgCCAAACGGTTCAAGATAAAGAACGTGCTGTGGCAGCACATAAAGACGCACACtgatgaaagaaattacaagtgcgaagTTTGCGGGAAATGTTTCACGACGAAGAAGATTCTGTCGGGGCACAGGAAGACGCATACGgatgaaagaaattacaaatgcgagatttgcaCCAAATGCTTCACAAGAAAGGAATATTTGTTGAAACATACGAAGAAGCACACTGATAGTAGTTATAAGTGTGGAATTTGTGAACAATATTTTGGAAAGAGGAAAGCGTTTCTTGAACATAAGAAAACACATGTTGAAGGAAGCGGCGAGGAAGATTTTCTTCGGCAATTGTCATATAAAATGGAGATTGATGTAAATGATTCCAAGTCATTGATCGATGTGAAATCTGAACCGATGGATTGTACAACTTTATTCCCAAAACTGGAGTCTTGCTATGGATATTCTATTGATGTTAAACACGATAAAGTGGATTGTGCGGTTAAAgtaaaggaagagaaatacgAAGTTTCAAACACTGGAATTGTTCCTGACGATATCGGAATTAAGTTGGAAATCAATGACGACGATTTTTTAAACTCTAAGACAAGAAATGTTATATTAACTGAAGAAAAAATTCTAGGTGATAACAAGTATGACATGAAGGAACACATCGGCAAAATTAACCACGAATGCGGAACTTGCAACAAATCCTTTGCCACGAAACAAAATCTATCGAAACACGTCAAAACGCACACGGGAGAAAAAACAAAAATGTCGTTGAGACTTATGAAAGCACACACTGATGAAGATTTTTCGTGTACTTTGACGACATCTAAAACAGAGGAAATTAGTGATATTGAGGAAAAGATCATTAAGAAGGAAATTGGTACGTTCCTGAATAGAGATAATTTGGAAAACAATAGTGACAAAATGAAGACTGACACGAATGACTCCAACTTGTCGATTGTCCAAGCGAAACATCCACCAAGTTTTTTAATCGCAAAACCCCAACTTCGCAGTTTGACTAAAATTGATGTAAATGACGAAGAAAAAGCCGTTTTCGTAAAGGAAGAGAGATCTGAGCCAATCGCCGATATAAAACTCGATACAATTAGTATCGCACAAAATATCGCAAACTCTGAACTAAAATCGGATATCGAAAACGAAAACCAAGAATATGCAAACGAAACCGACGAGACTAatcacaaatgcgaaatttgcgcgaAATCCTTCGCGTCAAACGCCCACATGTCGAAACACATGAAAACTCACGtcaacgaaagaaattacaaatgtgaagtttgcacgAAACGCTTCGCACGGAACCAAAATAGGTTACGACACATGAAAATTCACACCGGTgaacgaaattataaatgcgagACTTGCACGAAATGTTTCACGACCAAATACATCCTTCTGATGCACATGAGGATACACACGAACGAAAGGAACttcaagtgcgaaatttgcgcgaAAAGCTTCACAAGAAACCAAATTCTACTGCAACACATGAGCATACACAACGAGAGGAATCACAGCTGCGAAATTTGCGGCAAGTCTTTCCGAACGAACCGTGCCGTGCTGAATCACATGAAGACGCACGGCGGCGAgaaaaactacaaatgtgaGCTCTGCGGCAAATGCTTCACAAGAAAACACAGCGTGTTGCTGCACATGCAGATCCACACGGGCGAAAGAGATTTTAAATGCGAGGTTTGTAGTAAATCTTTCGCGTCGAAGTACGTATTGTTGATGCACACGAAAATTCACACCAATGAAAGAGATTATCATTGCGAGATTTGCGCAAAGCGGTTCACGACGAAGAAGATCTTATTGGCGCACATGAATATTCACTACgagagaaattataaatgcgaagTTTGTCCCAGTTACTTTGTAACGAAACGAAATCTGTTGAGGCACATGCGGATACACAccgacgaaaataattttaagtgcgAAATATGTAACCAGTATTTAGGAAAACGAAAACTGTTAGAGGAACATACGAAAACGCACATTGAAGAGAGCAATGAAAAATGTGTTGGTCTAAAATTTCCTTATAATTTGCAAGCCGTTGATAAGATTGAAAAACGTTTGATTAAAAAAGAGATGGTATTCataaaggaagaaaaatcaGACGTTTGTGATATGGGTTTATCAAGTTCGTGA
Protein Sequence
MKSAISDSNATNVEVIPVPIEFTTLITKPEPCSEYPVGVDTNAGNAVTIKEEKYDPDESKYSRATGLEASCENIAKTILQQTNFKCEICTRCLTTKQILKRHMQTHATNINHKCKLCSKCFRTKRNLLQHTKTHSDEKNYKCDVCAKRFKIKKSLGQHMRIHTDERNYKCEVCAKRFTTKDVQSQHLKTHTTERNHECEICAKRFGARVYLLNHMKIHARERKYECEICTKRFKTKEVRSKHMKTHSNERKYRCEICAKNFTMKNTLANHVKTHADVRNYKCEVCAKCFKTASSLWCHMNAHAIERNYKCEICAKCFKTRDILSKHTKIHTDVRDHECAICNKRFTTKKNLSVHVKTHRNGIKYKCEICDRNEACEHCLSVKNQWEHTKIQETNFKCDLCTKRFTTRQILKRHMKIHTNNKSYKCEICSKCFAANRNLLQHLKMHSSERNHKCEICAKRFTTKEILLRHMKTHTDGKNYRCEVCMKCFTTKQILSRHMTIHTGERNYECEICTKCFTTKDNLSKHVKAHTDERNYKCEICAKRFKIKNVLWQHIKTHTDERNYKCEVCGKCFTTKKILSGHRKTHTDERNYKCEICTKCFTRKEYLLKHTKKHTDSSYKCGICEQYFGKRKAFLEHKKTHVEGSGEEDFLRQLSYKMEIDVNDSKSLIDVKSEPMDCTTLFPKLESCYGYSIDVKHDKVDCAVKVKEEKYEVSNTGIVPDDIGIKLEINDDDFLNSKTRNVILTEEKILGDNKYDMKEHIGKINHECGTCNKSFATKQNLSKHVKTHTGEKTKMSLRLMKAHTDEDFSCTLTTSKTEEISDIEEKIIKKEIGTFLNRDNLENNSDKMKTDTNDSNLSIVQAKHPPSFLIAKPQLRSLTKIDVNDEEKAVFVKEERSEPIADIKLDTISIAQNIANSELKSDIENENQEYANETDETNHKCEICAKSFASNAHMSKHMKTHVNERNYKCEVCTKRFARNQNRLRHMKIHTGERNYKCETCTKCFTTKYILLMHMRIHTNERNFKCEICAKSFTRNQILLQHMSIHNERNHSCEICGKSFRTNRAVLNHMKTHGGEKNYKCELCGKCFTRKHSVLLHMQIHTGERDFKCEVCSKSFASKYVLLMHTKIHTNERDYHCEICAKRFTTKKILLAHMNIHYERNYKCEVCPSYFVTKRNLLRHMRIHTDENNFKCEICNQYLGKRKLLEEHTKTHIEESNEKCVGLKFPYNLQAVDKIEKRLIKKEMVFIKEEKSDVCDMGLSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-