Gspi031253.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1504668-1513584[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.33 23 6.7 0.1 3 16 102 115 101 117 0.89
2 28 0.019 1.3 10.6 1.1 2 19 128 145 127 148 0.94
3 28 3.5e-05 0.0025 19.2 4.4 1 23 152 174 152 174 0.97
4 28 0.0002 0.014 16.8 2.8 1 23 180 202 180 202 0.97
5 28 0.0013 0.095 14.2 4.6 1 23 208 230 208 230 0.98
6 28 1.6e-06 0.00012 23.4 3.3 2 23 237 258 236 258 0.96
7 28 0.0029 0.2 13.2 2.7 1 23 264 286 264 286 0.98
8 28 7.7e-06 0.00054 21.3 1.8 1 23 292 314 292 314 0.97
9 28 0.0046 0.32 12.6 6.2 1 23 320 342 320 342 0.97
10 28 0.0029 0.21 13.1 5.0 1 23 348 370 348 370 0.98
11 28 0.0006 0.043 15.3 5.6 2 23 377 398 376 398 0.96
12 28 2.3e-05 0.0016 19.8 2.9 1 23 404 426 404 426 0.99
13 28 0.00044 0.031 15.7 0.3 1 23 432 454 432 454 0.97
14 28 5.4e-08 3.8e-06 28.1 0.5 1 23 460 482 460 482 0.99
15 28 3.6e-06 0.00025 22.3 3.5 1 23 488 510 488 510 0.99
16 28 0.037 2.6 9.7 3.9 1 23 516 538 516 538 0.97
17 28 6.7e-06 0.00047 21.5 4.6 1 23 544 566 544 566 0.99
18 28 0.00017 0.012 17.1 3.3 1 23 566 588 566 588 0.98
19 28 2.4e-05 0.0017 19.7 3.6 1 23 730 752 730 752 0.98
20 28 0.00022 0.016 16.7 5.8 1 23 758 780 758 780 0.98
21 28 2.7e-06 0.00019 22.7 3.7 1 23 786 808 786 808 0.98
22 28 0.00014 0.0096 17.3 2.2 1 23 814 836 814 836 0.95
23 28 2.2e-06 0.00016 23.0 2.0 1 23 842 864 842 864 0.99
24 28 0.0063 0.44 12.1 0.5 1 23 870 892 870 892 0.97
25 28 1.3e-06 8.9e-05 23.7 2.2 1 23 898 920 898 920 0.97
26 28 1.6e-05 0.0012 20.3 0.7 1 23 926 948 926 948 0.94
27 28 3.9e-05 0.0027 19.1 2.4 1 23 954 976 954 976 0.97
28 28 0.00035 0.025 16.1 1.7 2 20 983 1001 982 1003 0.93

Sequence Information

Coding Sequence
ATGGAGACTGGCGTAAATGCTTCTAAATGCACGATCTACAGCACAGAGCCTGATTCAAAGCTGGAGTCTTACTATGCATATTCTCACGTTAAATGTGACGTTACCGTAAAGGAGGAGATCCATGAAGACGGTGCGGCCCAAAATGTTTCAAACGCTGGGTTTGCATCCGGTGATACGAAAATTAAGTTGGAGCTCGGTGACGACAACGAATTGTTAAATTCTTATCGCGACGAGGACCTAGGCGAACGCGATGCTGAAACTACAATCGATGTAGAAGCACACCCTGATAAAAGAAACAAcatatgtgaaatttgcaacaaatactTCACAAATGATACAAATTTAGCTTCGTACACAAAACCACacgcaacaaaaaataacaaatgtcaaatttgcgACGAATGCTTCATCACTAAACGATATGTGTCGCGGCACTCGACCATCGAACGAAACCACAAATGCGAAATCTGCAACAAATGTTTCACCACAAAAGCCTATCTAAGCGCGCACGCGACCACCCACTCCGCCGAAAAAaaccacaaatgtgaaatttgcggcaAACGCTTCGCGAACAAAACAAATCTATCGTTCCACGCAAAAACGCACACCACCGAAAGAAACCACAAATGCGAAATCTGCACGAAAAGCTTCACGACGAGAGAATACAAGCTGCAGCACTTGAAATCGCACATCGTCGAGCGAACCTGCAAGTGCGAAGTCTGCGACAAACGCTTCACGACGAAATCGAACCTGGCGCAGCACGCGAAGACGCACGCCACCGAAAAAAaccacaaatgcgaaatttgtgCGAAAAGCTTCATTATCAGACCGTACCTGCTGCACCATTTAAAAACGCACGCCGGCCAACGAAACCACAAGTGCACAACTTGCGACAAACGCTTCACAACTAAGATAAATCTAGAGGCGCACGTGAACGCGCACACCGGCGCGGGAAATcacaaatgcgaagtttgcgACAAGCGCTTCACGAAGAAGACGCATCTGGCGTTTCACGTCAAGACGCACACGACCGAAAGAAACCACCGGTGCGAGACGTGCGAGAAGCGTTTCACGACGAAGGAGTACATGCTGCAGCACTCGAAGACGCACGTCGGCGAACGAACCTGCAAATGCGAAACTTGCGGCAAGTGCTTCACGACGAAGGCGAATTTGGCGTTTCACGTGAAAACGCACACGAccgaaagaaactacaaatgtcaAGTTTGCGACAGGCGCTTCGCGCGAAAACCGTATCTGCTGCACCACGTAAAGACGCACACCGGCGAACGCAACTACGCGTGCGAAATGTGCGACGGACGCTTCACGACGAAAATGAGTCTGGCGCGGCACGTGGAGAGACACGCCGGCGAAAAAAAATACGAGTGCGACGTTTGCGGCAAATCGTTCACGACGAAAGAAAGTCTGGCGAAGCACGTCAAGACGCACACCGGGGAAAGGAATTACAAATGCGACGTGTGCGGCAAGTGCTTCTCGATGAAACAGTATCTGTTGAGTCACATAAAGACGCACACGAAAAAATCTGATTATAAATGTCAAGTTTGTAAAGTGTGCTTTGCGACAAAAGACTGCATGTTGGAGCACGCGAAAGAACACAGTCGTGAACGGCACTACaggtgtgaaatttgcaataaatgtttCGTCACAAAACGACAGTTTCTGAGACACGTCAAAACgcacaaatgtaaaatatgcgACCAGCGTTTCAATAAGAGGAAAGATTTTTTGGAACATATGGAAACACACCTCGGAGAACAACACTTTGAGGAGAAATATCTTCAAAATTTTCCGTGCATTACAACAATTacgacagaagaagaagaagtcgGCGAGATCGATAAAACGTTGATTAAGGAAGAGAACGGCAAAATGAAGACTGAAATAAACGATTCCACGATCGCAAATCCAGAACCTGAATCGGTAGGATGTCCGCAGTTTTGCTACAAATACGATAAATGTTCTGCCATCGTGAAGAAAGAGGAATATGAAGATGACGGTACCGTTGAACCGGCACAAAATCTTTCAAACTCTGAAATTGCATCTGATATTAAAGTTAAGTTAGAAGTCGGCGATGGTAATGATTCCTTGGACTATTCTAGCGACAAGAAATCAATAGAACAAGATAATGCAAATGAAATCACCGTGCAAGCTCTTActgtaaaaaaaaaccacaaatgcgaaatttgcaacaaatgcttcacaatcAAAACGAACCTGGCCGCGCACGTACAAACGCACACCGGCGAACGAAACcacaaatgcgagatttgcaCGAAACGCTTCACGACGAAACACAACATGTTGCAACACGTCAAGATCCACTCGGGCGAACTGAACCACCGGTGCAAAATCTGCGACAAACGCTTCACGACGAAAACGAACCTGGCCGTCCACGTAAAGAAACACACCGGAGAAAAACCGCACGACTGCCAACTCTGCGACAAACGCTTCGTGACGAGGTACAACATGCTGCAGCACATGAACGCGCACACCGGCGAGCGCGACTacgaatgcgaaatttgcgacagACGATGCACGACGAAGTCGAACCTGGCCGTGCACCTGAAGCGACACGCCGGCGAGAGAAACCACACGTGCGCGATTTGCGCGAGGAGCTTCGTGATCAAGCAGGAGCTGACGAAACACGTCGGGACGCACGCCGGCGAAAGGAACCACGAGTGCGCGACTTGCGGCAAACGTTTCACGACGAGGTCGAATCTGACGGTGCACGCGAAgacgcacaccggcgagaaAAAGTTCAAGTGCGACGTTTGCGGGAAACGGTTCACTTCGAGGCAGAGCCTGTCGCAGCACTTGGGGGCGCACGACGGCGAACGAAACCACAGCTGCGAGATTTGCGAGAAACGCTTCACGACGAAGAAATATTTGGCTGTGCACGTGAAGAGCCACGGCGGCGAGGGAAATATTCGatgcgaaatttgcaagaaGTGCTTCATGACCAGGCAAAATCTTCAGAAACACGAAGAACGTTTGTCGGGTTGCTTGAAGACGCTCGTCGATCAAAGAAACCCTGAGAGAGAAGTGTTTTTGAGACACACGTTGGTTAAGGAAGAGTATGGTACATTCCTAATGAAAGACAATTTGGAAACCAACACTgATGGCTGCACCGCCATGACAACAAATCGTTTGAATATCGACGAAAAGTTAGGTTATCGGCGAGCCATCGCTCAAAGTAGGGTGCAAGGAAACATATGTCGCGCTTCGAAAGTACATAAATGGCTCTGCGATAAGAATCGCGTCATTTACGACTCGTGA
Protein Sequence
METGVNASKCTIYSTEPDSKLESYYAYSHVKCDVTVKEEIHEDGAAQNVSNAGFASGDTKIKLELGDDNELLNSYRDEDLGERDAETTIDVEAHPDKRNNICEICNKYFTNDTNLASYTKPHATKNNKCQICDECFITKRYVSRHSTIERNHKCEICNKCFTTKAYLSAHATTHSAEKNHKCEICGKRFANKTNLSFHAKTHTTERNHKCEICTKSFTTREYKLQHLKSHIVERTCKCEVCDKRFTTKSNLAQHAKTHATEKNHKCEICAKSFIIRPYLLHHLKTHAGQRNHKCTTCDKRFTTKINLEAHVNAHTGAGNHKCEVCDKRFTKKTHLAFHVKTHTTERNHRCETCEKRFTTKEYMLQHSKTHVGERTCKCETCGKCFTTKANLAFHVKTHTTERNYKCQVCDRRFARKPYLLHHVKTHTGERNYACEMCDGRFTTKMSLARHVERHAGEKKYECDVCGKSFTTKESLAKHVKTHTGERNYKCDVCGKCFSMKQYLLSHIKTHTKKSDYKCQVCKVCFATKDCMLEHAKEHSRERHYRCEICNKCFVTKRQFLRHVKTHKCKICDQRFNKRKDFLEHMETHLGEQHFEEKYLQNFPCITTITTEEEEVGEIDKTLIKEENGKMKTEINDSTIANPEPESVGCPQFCYKYDKCSAIVKKEEYEDDGTVEPAQNLSNSEIASDIKVKLEVGDGNDSLDYSSDKKSIEQDNANEITVQALTVKKNHKCEICNKCFTIKTNLAAHVQTHTGERNHKCEICTKRFTTKHNMLQHVKIHSGELNHRCKICDKRFTTKTNLAVHVKKHTGEKPHDCQLCDKRFVTRYNMLQHMNAHTGERDYECEICDRRCTTKSNLAVHLKRHAGERNHTCAICARSFVIKQELTKHVGTHAGERNHECATCGKRFTTRSNLTVHAKTHTGEKKFKCDVCGKRFTSRQSLSQHLGAHDGERNHSCEICEKRFTTKKYLAVHVKSHGGEGNIRCEICKKCFMTRQNLQKHEERLSGCLKTLVDQRNPEREVFLRHTLVKEEYGTFLMKDNLETNTDGCTAMTTNRLNIDEKLGYRRAIAQSRVQGNICRASKVHKWLCDKNRVIYDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-