Gspi027338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
RpL38
Assembly
GCA_959613385.1
Location
OY390738.1:36643417-36651375[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 9.1e-05 0.0064 17.9 0.6 1 23 130 152 130 152 0.99
2 26 0.00016 0.011 17.2 5.1 1 23 158 180 158 180 0.98
3 26 8.7e-05 0.0062 18.0 5.5 1 23 186 208 186 208 0.99
4 26 1e-05 0.00073 20.9 2.3 1 23 214 236 214 236 0.98
5 26 6.9e-06 0.00049 21.4 0.4 1 23 242 264 242 264 0.98
6 26 6.4e-05 0.0045 18.4 3.7 1 23 270 292 270 292 0.98
7 26 1.3e-06 9.1e-05 23.7 1.8 1 23 310 332 310 332 0.99
8 26 4.5e-06 0.00032 22.0 1.7 1 23 338 360 338 360 0.99
9 26 0.00015 0.01 17.2 5.3 1 23 366 388 366 388 0.98
10 26 0.3 21 6.8 0.6 6 23 511 528 511 528 0.97
11 26 3.5e-06 0.00025 22.4 2.6 1 23 534 556 534 556 0.98
12 26 1.6e-06 0.00011 23.4 1.1 1 23 561 583 561 583 0.97
13 26 9.6e-06 0.00068 21.0 1.2 1 23 589 611 589 611 0.98
14 26 2.8e-05 0.0019 19.5 1.6 1 23 617 639 617 639 0.96
15 26 0.00028 0.02 16.4 5.2 1 23 645 667 645 667 0.98
16 26 4.3e-06 0.00031 22.1 2.3 1 23 673 695 673 695 0.98
17 26 0.00012 0.0086 17.5 3.5 1 23 701 723 701 723 0.99
18 26 9.8e-06 0.00069 21.0 0.9 1 23 728 750 728 750 0.97
19 26 6e-06 0.00042 21.6 1.1 1 23 756 778 756 778 0.98
20 26 0.00012 0.0088 17.5 2.4 1 23 784 806 784 806 0.98
21 26 5.7e-06 0.0004 21.7 1.5 1 23 811 833 811 833 0.97
22 26 1.1e-05 0.0008 20.7 0.7 1 23 839 861 839 861 0.98
23 26 6.1e-07 4.3e-05 24.8 1.7 1 23 867 889 867 889 0.99
24 26 7.3e-06 0.00052 21.3 1.5 1 23 895 917 895 917 0.96
25 26 0.00078 0.055 15.0 0.1 1 23 923 945 923 945 0.98
26 26 0.00024 0.017 16.6 0.2 1 19 951 969 951 971 0.98

Sequence Information

Coding Sequence
atggcGATGCACGTAAATAATTCGAATATCACGATCGACGAAGTAAAACTAGAACCAACGGATTATGCATCCGTGACCCCCCAACTGCAATCCCACTACGGACATTCTCGTGTTGAAATTGATCGTAAAGACACGTTAAAGAAAGAGGAACACGCCGCTATAAAGAcggcaaaaataaattttaatatcgttgGTGTCGCACAGAATATTTCAAACACTGGAATAACAAGTAAGGGCATAAATATTAAGTTGGATCTCGGCGACGACAGTGCTTTGTTGAGCTCTTCGGGTACGAAAGAACCTAGTGAAAGACAAGATACAAGTGAAGGTGGTTTCAAAACACGACGGCTATTGGACCACATGAAAatgcacaccggcgaaagaaactACAAGTGCGAAACTTGCGCCAAACGCTTCAGAGCGATGGGTAATCTCCTCACTCACATGAGGATACACACCAGTAAAAGAAATCACAAGTGCGAAACTTGCGGGAAACGCTTCAGAATAAAAAGTCATCTGTTAACTCACAGGTTGGTGCACACCGGcgaaaaaaattacaggtgTGCAATTTGCACGAAATGCTACGCTACAAAAAGCCATTTATCGAGTCACACGATGACGCACTCGACCGAACGGaactacaagtgcgaaatttgcggaAAATGTTTCACGACGAGGAGATATCTGGTGGGTCACGAGCTGACGCACACCGGCGGAAGGAAATACGCGTGTGGAATTTGCACCAAGTCTTACACAACGAAAATCAATCTGTCGAGTCACATGATGGTGCACACCGGCGAGAGgaattacaagtgcgaaatttgccgCAAACGCTTCACAACAAAGAAATACCTGTTGAGTCACACGTCTTCGCACTCGGGCGTGAGAAAacacaaTCACATGATgacgcacaccggcgaaaggaACTACAAGTGCAAGATTTGCGACAAGCGCTTCACGACGAAGAAATATCTGTTGGGTCACATGCTGGTGCACACCGGCGAAAGGAAATACAGGTGTGAAATTTGTGCCACGCGTTTTACACAGAGAGGCCACCTGGCGACTCACATGAGAATGCACTCGGGCGATAGAAATCACAAGTGCGATATTTGCGATAAATGCTTCTTGACGAAGAGCAATCTGTCGAGGCACGAGAAAGTgcacaccgCGATGGTTATAAATATGACTACTACAACTCCCcatgcaattattataaatggaaAGGTGGAGACGTACATACACGGTTTGAATTTCACAACTGACGAAGTAAAACCAGTAATAACGGAATTTGCATCCTTAACTTCTGAACTATCACGCTACGGAGATGTCGAAAGTGATGCCGTTGGTGTGCCACAGAATACATCGGTCCCCTCAATCGCACGTGAAGACATCAAAATTAAGTTGGATCTCGATCACGACGATGATGATGATTTGACGTGTGAAAGACGAGATGCAAGTGAAAGTGATTTTAAAACTTCTGGGATGCCAGACGTACATGAAAGTTGCAAAAATGATGAAGTGTCCAAACCTTGCGCTAAAAGGTTTAAAACGAACCGACAGGTAATGAATCATATGGGAATGCACACCAGTGAAAGAAAATACGAGTGCGAAATTTGTACCAAATGCTTCACAAGAAAGAACTACCTGTTGAGTCATATGATAGTACACGGTGACAAAAAATACAACTGTGAAATTTGCTCCAAACGCTTTAGAAGAAAAGGGAACCTGTCGAATCACATGATACTACACAACGGCGACGAGAaatacaagtgcgaaatttgcgcgaAGTGCTTTACGATGAAGGGCAATCTATCGAGCCACATGGCGATACACACTGGCGATAGAAAacacaagtgtgaaatttgcgtTAGACGCTTCATAAGAAAAAGCGATCTGTCACGTCACATGGTACTACACGACGATGAGAAAAaatacaagtgcgaaatttgctcCAAGTGCTTCAGAAGAGAACATAGTATGTCGAGTCACATGATACTACACACTGCTGACGAAAcatacaagtgtgaaatttgtgCCAAATGTTTCACGACGAAAAGAAATCTTGTGAGTCACATGATACTGCACAACGGTGACAAAAAATACGAATGTGAGATTTGCGCAAAGTGTTGCATGTCAAAAAGTAATCTATCGAGCCACATGATAACACACGcagataaaaaatacaaatgtgaaatttgcccCAAACGCTTCAGAAGCCAAAACGACTTGTCGAGTCACACGTTATtacacaccggtgaaagaaaaTACGAATGCGAAGTTTGCGCCAAACGTTTCACGAGAAAAAACTACCTGTTGCGTCACATGATGCTCCACAACgacgaaaaaaaatacaagtgcgaaatttgctcGAAACGCTGCAGGCTGAAAAGCAGCCTATTGAGTCACATGATAATACACGCGGATAAAAAATACGAGTGTGAAATTTGCTCGAAACGTTTCAGAAGAAAAACCGACCTCTCGAGTCACATGACGTTGCATACCAGCGACGAAACTTACAATTGCGAAATTTGCGCGAAACGTTTCACGAGAAGAGACTACCTGTCGAGTCACATGCTGGTGCACGACGGCGACAAAAaatacaagtgcgaaatttgcggcaAACGTTTCGCAAGGAGGCACACCCTGTCAGCACACTTGAAGGTACACTCGGACGAGAAAAAATACGAGTGTGAAATTTGCTCGAAGTGCTTCAGGAGGAAGACGGACCTGGCGAGGCACGCGATATTGCATACCGGCGACAAAAAATACGAATGTGAGATTTGCGCGAAACGCTTCGCGGCCAAACGTAATCTGTCGGGTCACATGACGATACACTCGggcgaaaaaaaatacaagtgcgGAATTTGCCCGAAACGCTTCAGAATAAAGTCCGACCTATCGAGACACCCTCGTCAAATCACAGAAATCAAAGACTTCCTCTTGAAAGCAAGAAGGAAAGATGCAAAATCTgttaaaataaagaagaacccAGACAACACGAAATTCAAGGTCCGCTGTTCGAGATTCCTTTACACGTTGGTGATTGTGGAGAGCGAGAAGGCCGACAAACTGAAACAGTCCCTGCCTCCGGgccTTCAAGTTaaagaagttaaataa
Protein Sequence
MAMHVNNSNITIDEVKLEPTDYASVTPQLQSHYGHSRVEIDRKDTLKKEEHAAIKTAKINFNIVGVAQNISNTGITSKGINIKLDLGDDSALLSSSGTKEPSERQDTSEGGFKTRRLLDHMKMHTGERNYKCETCAKRFRAMGNLLTHMRIHTSKRNHKCETCGKRFRIKSHLLTHRLVHTGEKNYRCAICTKCYATKSHLSSHTMTHSTERNYKCEICGKCFTTRRYLVGHELTHTGGRKYACGICTKSYTTKINLSSHMMVHTGERNYKCEICRKRFTTKKYLLSHTSSHSGVRKHNHMMTHTGERNYKCKICDKRFTTKKYLLGHMLVHTGERKYRCEICATRFTQRGHLATHMRMHSGDRNHKCDICDKCFLTKSNLSRHEKVHTAMVINMTTTTPHAIIINGKVETYIHGLNFTTDEVKPVITEFASLTSELSRYGDVESDAVGVPQNTSVPSIAREDIKIKLDLDHDDDDDLTCERRDASESDFKTSGMPDVHESCKNDEVSKPCAKRFKTNRQVMNHMGMHTSERKYECEICTKCFTRKNYLLSHMIVHGDKKYNCEICSKRFRRKGNLSNHMILHNGDEKYKCEICAKCFTMKGNLSSHMAIHTGDRKHKCEICVRRFIRKSDLSRHMVLHDDEKKYKCEICSKCFRREHSMSSHMILHTADETYKCEICAKCFTTKRNLVSHMILHNGDKKYECEICAKCCMSKSNLSSHMITHADKKYKCEICPKRFRSQNDLSSHTLLHTGERKYECEVCAKRFTRKNYLLRHMMLHNDEKKYKCEICSKRCRLKSSLLSHMIIHADKKYECEICSKRFRRKTDLSSHMTLHTSDETYNCEICAKRFTRRDYLSSHMLVHDGDKKYKCEICGKRFARRHTLSAHLKVHSDEKKYECEICSKCFRRKTDLARHAILHTGDKKYECEICAKRFAAKRNLSGHMTIHSGEKKYKCGICPKRFRIKSDLSRHPRQITEIKDFLLKARRKDAKSVKIKKNPDNTKFKVRCSRFLYTLVIVESEKADKLKQSLPPGLQVKEVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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