Gspi029557.2
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390739.1:15693570-15707163[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.0056 0.4 12.3 0.8 2 23 3 24 2 24 0.96 2 37 0.00028 0.02 16.4 1.0 2 23 58 79 57 79 0.97 3 37 0.0046 0.32 12.5 1.1 1 23 85 108 85 108 0.93 4 37 7.9e-05 0.0056 18.1 4.3 1 23 113 135 113 135 0.97 5 37 0.0028 0.19 13.2 0.3 1 23 144 166 144 166 0.98 6 37 1.3e-06 9.2e-05 23.7 0.6 1 23 172 194 172 194 0.98 7 37 0.0017 0.12 13.9 2.8 1 23 200 222 200 222 0.97 8 37 2e-05 0.0014 20.0 2.0 1 23 228 250 228 250 0.97 9 37 0.53 37 6.1 0.3 1 16 256 271 256 273 0.88 10 37 0.00057 0.04 15.4 1.1 2 23 275 296 274 296 0.98 11 37 0.72 51 5.6 0.5 1 23 301 324 301 324 0.94 12 37 0.00035 0.025 16.1 2.0 2 23 330 351 329 351 0.97 13 37 0.0023 0.16 13.5 0.8 1 23 357 380 357 380 0.95 14 37 4.9e-05 0.0035 18.7 3.8 1 23 385 407 385 407 0.97 15 37 0.03 2.1 10.0 0.5 1 23 416 438 416 438 0.98 16 37 8.2e-07 5.8e-05 24.3 0.9 1 23 444 466 444 466 0.97 17 37 5.4e-06 0.00038 21.8 0.3 1 23 472 494 472 494 0.98 18 37 0.00015 0.011 17.2 5.2 1 23 500 522 500 522 0.97 19 37 0.79 56 5.5 0.2 1 17 528 544 528 545 0.89 20 37 0.00022 0.016 16.7 1.3 2 23 547 568 546 568 0.98 21 37 0.00028 0.02 16.4 1.0 2 23 602 623 601 623 0.97 22 37 0.0006 0.043 15.3 2.4 1 23 629 651 629 652 0.96 23 37 0.00022 0.016 16.7 4.0 1 23 657 679 657 679 0.96 24 37 0.04 2.8 9.6 1.5 1 23 688 710 688 710 0.98 25 37 4.3e-06 0.0003 22.1 0.6 1 23 716 738 716 738 0.97 26 37 7.5e-06 0.00053 21.3 1.6 1 23 744 766 744 766 0.98 27 37 0.00015 0.011 17.2 5.2 1 23 772 794 772 794 0.97 28 37 3 2.1e+02 3.7 0.4 1 15 800 814 800 814 0.90 29 37 0.00052 0.037 15.5 5.0 1 23 822 844 822 844 0.98 30 37 0.0011 0.076 14.5 5.3 1 23 878 900 878 900 0.98 31 37 0.062 4.4 9.0 0.6 1 23 906 929 906 929 0.96 32 37 0.0025 0.17 13.4 3.6 1 23 934 956 934 956 0.96 33 37 0.00084 0.06 14.9 0.4 1 23 965 987 965 987 0.98 34 37 4.2e-06 0.0003 22.1 1.1 1 23 993 1015 993 1015 0.97 35 37 2.2e-06 0.00016 23.0 1.5 1 23 1021 1043 1021 1043 0.98 36 37 2.6e-06 0.00018 22.8 2.7 1 23 1049 1071 1049 1071 0.98 37 37 2.2e-05 0.0016 19.8 1.8 1 23 1077 1099 1077 1099 0.98
Sequence Information
- Coding Sequence
- ATGAACAAGTGCCACCTGTGTCCAAAGTCGTACGACGCTTGGGGCAAACTGATGACACACCTAAGCCTTCACAATGAAAAGACCTACGCGTGCGACCAATGCGAAGAATTATTTAGATTTGAGTATCAGGTGCCCATCCACAAAAATAACGTCCACAATAGAATAGCGCTCGTCTGCGATTTTTGCGAAAAGAAATTCGAGTCCAAATACTCGTTGGGCGCCCACAGGCGCAAGCACTTGAAGGAGTACAGATTTAAATGCACGGAGTGCGATAGCGAATTCTACTACGAATCTGGGTTGAACAAGCACTACGACTTGCAACACAAAGGCGTGCGATTCGATTGCTCGACCTGCAAGAAAAGCTTCAAGAGCAAGTCCTACTACAAAAAGCACGTCCTGTCCCACAAACCAGACTTCGTCAAGACCGAGTTCGTTTGCCCGATTTGTTCGAAGGTGGTGTATTATTTACAGTCGTACATCTACCACATGAAGATACACAACGGTAGGGACTTGCACGTGTGCGAAGTATGCGGTAAGACGGTCACTACTGAGGAGAGCTTGAAGATCCATATGCGCACGCACACTGGGGAGAAGCCTTACATTTGCGAAGTTTGCGGGAAATGTTTCGCCTGCAAAAAACTGTTGGCTAGACATGAGAAGGTCCACAGCAAAGATAAACCGTATGCGTGCACTACTTGTGATAAGCGATTCTCACAAATGAGTAGCCTCACCGTACACAAGCGCTATCACACAGGTGAACGTCCGTACACTTGCGATATATGCCGCAAGACGTTAAAAAGTGAATCatattggaaaatgaaaaagtgcCATCTGTGTCCAAAGACGTACGACGCGTGGGGCAAACTGATGACACACCTACGCGTTCACGATGAAAAGACCTTCGCGTGCGACCAATGCGAAGAATTATTTAGATTTGAGAATCAGGTGCGCATCCACAAAAAGAACGTCCACAATGGAATAGCGCTCGTCTGCGATTTTTGCCAAAAGAAATTCGGGTCCAAATACTCGTTGGGCCGCCACAGGCGCAAGCACTTGAAGGAGTACAGATTTAAATGCACGGAGTGCGATAGCGAATTCTACTACGAATCTGGGTTAAACAAGCACTACGACGTGCAACACAAAGGGGTGCGATACGATTGTTTGACCTGCAAGAAAAGCTTCAGGAGCAAGTCCTACTACAAAAAGCACATTCTGTCCCACAAACCAGACTTCGTTAAGACCGAATTCGTCTGCCCGATTTGCTCGAAGGTGATGTATTATTTAAAGTCGTACGTCTACCACATGAAGATACACAACGGTAGGGACTTGCATATGTGCGAAATATGCGGTAAATCGGTCACCACCGAGGACACCTTGAAGGTTCATATGCGCACGCACACTGGGGAGAAGCCTTACATTTGCGAAATTTGTGGGAAATGTTTCGCCAGCAAACCACTGTTGGCTACACATGAGAGGGTTCACAGCAAAGCGAAGCCGTATGCGTGCACTACTTGTGATAAGCGATTCTCACAAAAGTGTAGCCTCACCGTACACAAGCGCTATCACACAGGTGAACGTCCGTACCTTTGTGATATTTGCCGCAAGACGTTAAAAAGAGAATCacattggaaaatgaaaaagtgcCACCTGTGTCCAAAGTCGTACGACGCGTGGGGCAAACTGAAGAACCACCTACGCGTTCACAAAGAAAAGACTTACGCGTGCGACCAATGCGAAGAATTATTTAGATTTGAGTATCAGGTGCCCATCCACAAAAAGAACGTCCACAATGGAATAGCTCTCGTCTGCGATTTTTGCGAAAAGAAATTCGAGTCCAAATACTCGTTGGGCGCCCACAGACGCAAGCACTTGAAGGTGTACAGATTTAAATGCACGGAGTGCGATAGCGAATTCTACTACGAATCTGGGTTGAACAGGCACTACAACGTGCATCACAAAGGCGTGCGATTCGATTGCTTGACCTGCAAGAAAAGCTTCAAGAGCAAGTCCTACTACAAAAAGCATGTTCTGTCCCACAAACCGGACTTCGTCAAGGCCGAATTCGTCTGCCAGATTTGCTCGAAGGTGATGTATTATTTGAAGTCGTACATCTACCACATGAAGACGCACAACGGTAGGGACTTGCACATGTGCGAAATATGCGGTAAGTCGGTCAGCAGCGAGCAGAGCTTGACGGTCCATATGCGTATGCACACTGGCGAGAGGCCTTACAGTTGCGAAGTTTGCGGGAAATGTTTCGCTAGCAAACGACTGTTGTCTACACATGAGAGGGTTCACAGCAAAGAGAAGCCGTATGCGTGCACTACTTGTGATAAGCGATTCTCACAAAAGTGTAGCCTCACCGTACACAAGCGCTATCACACAGGCGAACGTCCGTACCATTGTGATATATGCCGCAAGAGATTGAAAAgtgaatcaaatgaaaaatcggAAACACACCCGTTTAAATGCGAACTGTGTACAAAGACGTACGACACGTCGCGCAAACTCAAAAAGCACAAACGCTATCACAAAGACAAGATCCACGCGTGCGACCTatgcaaaaaattattcaaatttgcgTATCAGGTGCCCATCCACAAAAAACACGTCCATAACAAGGTTATAACGCACGTCTGCGACTTTTGCGAGAAGGGATTCGTGTCCAAACATGCGTTGCACGTCCACCGGCGCACGCACTTCAAGGATTACAGATTTAAGTGCACGGCGTGCGATAGCGGGTTTTACTTCCAATCTGCGCTGGACAAGCACTACGAGGTGCAGCACAAAGGCGTGCGATTCGACTGTTTGACCTGCAAGAAGAGCTTCATGAACAAGTACTACTACAAGAAGCACGTTCTGTCCCACAAACCAGACTTCGTCAAGGCCGAGTTCGTCTGTCCGATTTGCTCGAAGGTGTTGGGTTATTTGAAGTCTTACCTCAACCACATGAAGACGCACAACGGCAGGGACTTGCATATGTGTGAAATCTGCGGTAAGTCGATCACCACCCAGCAGAGCTTGAAGGACCACATGCGTGTCCACACTGGGGAAAAGCCTTACGTTTGCGAAGTTTGTGGGAAATGTTTTATTAGCAAAAAGTTGTTGACTACACACGAGAGGATCCACAGTAAAGTTAAACCGTATACGTGCACTATCTGTGATAAGAGGTTCTCACAAAGGACTAGCCTCGTCATACACATACGCCATCATACAGGCGAACGTCCATACGTTTGTGATATTTGCCGCAAGACGTTTATTACGAGAACTTTACTTAAAAATCATTCCAAAACACACGGTGTGCCATTCCAATGA
- Protein Sequence
- MNKCHLCPKSYDAWGKLMTHLSLHNEKTYACDQCEELFRFEYQVPIHKNNVHNRIALVCDFCEKKFESKYSLGAHRRKHLKEYRFKCTECDSEFYYESGLNKHYDLQHKGVRFDCSTCKKSFKSKSYYKKHVLSHKPDFVKTEFVCPICSKVVYYLQSYIYHMKIHNGRDLHVCEVCGKTVTTEESLKIHMRTHTGEKPYICEVCGKCFACKKLLARHEKVHSKDKPYACTTCDKRFSQMSSLTVHKRYHTGERPYTCDICRKTLKSESYWKMKKCHLCPKTYDAWGKLMTHLRVHDEKTFACDQCEELFRFENQVRIHKKNVHNGIALVCDFCQKKFGSKYSLGRHRRKHLKEYRFKCTECDSEFYYESGLNKHYDVQHKGVRYDCLTCKKSFRSKSYYKKHILSHKPDFVKTEFVCPICSKVMYYLKSYVYHMKIHNGRDLHMCEICGKSVTTEDTLKVHMRTHTGEKPYICEICGKCFASKPLLATHERVHSKAKPYACTTCDKRFSQKCSLTVHKRYHTGERPYLCDICRKTLKRESHWKMKKCHLCPKSYDAWGKLKNHLRVHKEKTYACDQCEELFRFEYQVPIHKKNVHNGIALVCDFCEKKFESKYSLGAHRRKHLKVYRFKCTECDSEFYYESGLNRHYNVHHKGVRFDCLTCKKSFKSKSYYKKHVLSHKPDFVKAEFVCQICSKVMYYLKSYIYHMKTHNGRDLHMCEICGKSVSSEQSLTVHMRMHTGERPYSCEVCGKCFASKRLLSTHERVHSKEKPYACTTCDKRFSQKCSLTVHKRYHTGERPYHCDICRKRLKSESNEKSETHPFKCELCTKTYDTSRKLKKHKRYHKDKIHACDLCKKLFKFAYQVPIHKKHVHNKVITHVCDFCEKGFVSKHALHVHRRTHFKDYRFKCTACDSGFYFQSALDKHYEVQHKGVRFDCLTCKKSFMNKYYYKKHVLSHKPDFVKAEFVCPICSKVLGYLKSYLNHMKTHNGRDLHMCEICGKSITTQQSLKDHMRVHTGEKPYVCEVCGKCFISKKLLTTHERIHSKVKPYTCTICDKRFSQRTSLVIHIRHHTGERPYVCDICRKTFITRTLLKNHSKTHGVPFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -