Gspi030996.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:173462-179533[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.12 8.5 8.1 3.5 1 23 129 151 129 151 0.93
2 36 0.00032 0.022 16.2 0.6 1 23 163 185 163 185 0.99
3 36 0.00015 0.011 17.2 1.8 1 23 191 213 191 213 0.98
4 36 0.0022 0.16 13.5 4.0 1 23 219 241 219 241 0.97
5 36 0.00085 0.06 14.8 1.7 1 23 247 269 247 269 0.97
6 36 0.0014 0.096 14.2 3.6 1 23 275 297 275 297 0.98
7 36 0.00054 0.038 15.5 1.1 2 23 304 325 304 325 0.95
8 36 8.2e-05 0.0058 18.0 4.1 1 23 331 353 331 353 0.99
9 36 7.8e-05 0.0055 18.1 2.0 1 23 359 381 359 381 0.98
10 36 0.043 3 9.5 3.7 2 23 388 409 387 409 0.94
11 36 0.0003 0.021 16.3 3.0 1 23 414 436 414 436 0.98
12 36 0.0044 0.31 12.6 2.4 1 23 442 464 442 464 0.97
13 36 0.00014 0.0096 17.4 4.4 1 23 470 492 470 492 0.98
14 36 0.0025 0.18 13.4 2.2 2 23 499 520 498 520 0.98
15 36 0.00013 0.0091 17.4 2.6 1 23 526 548 526 548 0.98
16 36 0.00026 0.018 16.5 2.7 1 23 554 576 554 576 0.98
17 36 5.2e-05 0.0037 18.7 1.4 1 23 582 604 582 604 0.96
18 36 0.0022 0.16 13.5 2.1 1 23 610 632 610 632 0.98
19 36 1.1e-05 0.00076 20.8 0.9 1 23 638 660 638 660 0.98
20 36 1.1e-05 0.00078 20.8 1.3 1 23 666 688 666 688 0.98
21 36 0.00012 0.0085 17.5 3.6 1 23 792 814 792 814 0.98
22 36 7.4e-05 0.0052 18.2 4.3 1 23 820 842 820 842 0.97
23 36 5.2e-06 0.00037 21.8 3.5 1 23 848 870 848 870 0.98
24 36 0.00039 0.028 15.9 4.9 1 23 876 898 876 898 0.98
25 36 1.7e-05 0.0012 20.2 0.7 1 23 904 926 904 926 0.97
26 36 2.5e-07 1.7e-05 26.0 1.8 1 23 948 970 948 970 0.98
27 36 0.00039 0.027 15.9 3.3 1 23 976 998 976 998 0.99
28 36 1.8e-05 0.0013 20.1 6.1 1 23 1004 1026 1004 1026 0.98
29 36 0.00046 0.032 15.7 0.9 1 23 1032 1054 1032 1054 0.97
30 36 0.0036 0.25 12.9 3.3 1 23 1060 1082 1060 1082 0.97
31 36 4.7e-07 3.3e-05 25.1 1.5 1 23 1088 1110 1088 1110 0.99
32 36 0.0012 0.084 14.4 1.3 1 23 1116 1138 1116 1138 0.98
33 36 0.00041 0.029 15.9 3.1 1 23 1144 1166 1144 1166 0.98
34 36 0.0054 0.38 12.3 4.2 1 23 1172 1194 1172 1194 0.96
35 36 0.00031 0.022 16.2 7.7 1 23 1200 1222 1200 1222 0.98
36 36 5.4e-05 0.0038 18.6 2.4 1 23 1228 1250 1228 1250 0.98

Sequence Information

Coding Sequence
ATGGAGACTGATGTGTACGATTCTAAGCGCTCGGTCGTCGCAATTAAATCGGAATCGATTGAATGTCAAATCTTGCACCCAAAACTGGAGCATTGTTACGATTATTCTCATCAAGAATGTGTCATCATAAAAGGGGAATGTGAAGTCACTGCCGTGCCAGTTACCCTCAATAACGTTGGGGCACAAAATGTTCCAAATCCGGATATTGCAACCGATGAtctcaaaattaaattggatttcaGCGGCGACGACATCGACAAGGGGCCACTCGAGCAAGGTGATGCAAACGAAAGTCGCCTTGAAACGGCAATCAATGCGACCCTAATGTCAACTGTGAAGCATAAGAATGTTAGGAAGTATTCGATAATACAACACAATGGAGGTTACGAGTGCAAAATCTGTTTCAAACGCTTCAAGACGAGGAAAATCACATTGAAACACGTAAAATCGCACGGCGAAGAAAACGTTTGTGCCAAACGTAAGAGCTACAAATGCGATGCTTGCGACAAATCCTTCGCGGCAAAACGAAACATGCTGGATCACCTGAAaacgcacaccggcgagaaGAACCACGAATGCGGAATTTGCGCCAAGCGATTCGTGACGAAGCAGTACCTGTTGAGACACGTCAAGACGCACTCCGGCGaacgaaattacaaatgcgaagcTTGCGGCAAGCGATTCACGACGAAACATTACATGCTGCAGCATTTTAAGGCTCACGACGACGGACGACGGCACAAGTGCGAAATCTGCGACAAATCCTTCATGATAAGGCGGAGTTTGTTGCAGCACCTGAAAGCGCACGCCTGCAAGGTCAATTAcgagtgcgaaatttgcaagaGATGCTTCGCGACGAAGCATTACATGCTGGAACACGCGAAGGTGCACGACGACGAGAAAAAGCCCAGGTGCAAGATCTGCGACAAGTCGTTCATGATGAAGCGGAGTCTCCTGAAGCATCTGGAGGCGCACGCCGGCAGACGGAACTACAAGTGCGACGTTTGCGACAAGTCGTTCTCGACTAAGCATTACATGCTGGAGCACTCGAAGACGCACGACGACGAGCGAAAATACAGATGCGAAATCTGCGACAAATCGTATGCGACGAAGCACTACATGCTGCAGCACGTCAAGGTGCACGACGACCGGCAAAAGTGCAAGTGCAAATTCTGCGACAAGTCATACACGACGAAGCAACGCATGCTCGAACACGTGGAGGTGCACACGAAAAGCGACCACAGATGTCGCATCTGCGACAAGTCGTTTGCGATAAAACGAAACATGCTGCGACACGTGAAAACACACGCCGGGGAAAGAAACTACAAGTGCGAGATCTGCTCGAAATGTTTCACTGCGAAACGGACCATGTTGCAACACGCGAGCGTGCACACCGGCGAGAAGAACCACAAGTGCAAGATCTGCGGCAAATCGTACTCGACGAAGCAGTATATGTTGCAACACGAGAAGACGCACGGCGGCGACCGCGCCAACAAATGCGAATTTTGTGGTAAATCGTACACGACGAGGCAACGAATGTTGCAGCACGTGAAAACACACACCGGTGAAGGCGATCACAAATGCGAGACTTGCGATAGATCGTTCGCGTCACAGCGAAACATGCTGCAACACGTCAAGATGCACACGGGCGAGAGGAaccataaatgtgaaatttgcgacaaatcCTACACCACCAGGCAATACATGCTGCAGCACGTCAAAGTGCACACTCGCGGCAAGAAGTACAAGTGCGAGATCTGCGAGAAATCGTTCACGACGAACCGAAACATGTTACAGCACTCGAAGGCGCACGCCGGCACCAAGAATTACAAGTGCGAGATTTGCTGCAAGTCGTTCGCGACGAAATATTACGTCCTGCAGCACATGGCGATACACACCGGCGAGaggaaatttaaatgtgaaatttgcgacaaatcCTTCACGACGAAACAGTACATGTTGCAACACCTTGCGGTACATACCGTTGGGAAAAAAtataagtgtgaaatttgcggcAGGTGCTTCGCGAGAAAGGCACGTTTGTCGAAGCACGTTGAAATCCACGGCAGGGAGGGCGAAAATTGCAGAACGTCGACACACGTTGAAGAAAGTGATGAGATTAGTAAACCTTTGATTAAAGACGAGACAATTGACGAAATGGAGATTAATATGAATGATTGCAGCGTGGGAGTAAAACCTGAAGCAATAGAATGCCCAACGTTGTACATAAAATCGGAGTTTTGCTACGGATACGAAGAATTGTGCGTGAAGAAGGAGGAATACCTGCCGATCACCGACGACGTTTCAAGCGCCTTAGTTGCATCGAATATCGAAGTTAAGTCGGATCCCGGCGGTGTAGACTCGTCGAAAGcccacaaatgcgaaatttgcgacagGTGTTTCGCAACCGAACAGCTGCTCTCGAAGCACGTCAAGATGCACGTCGGCAAAGGCGACttcaaatgcgaaatttgcaataaacgcTTCACGACGAAGCACTACATGCTGCGACACGTGAAGGCGCACACAGAGAAGACgaattacaaatgcgaaatttgcggcaAGTGTTTCACGACGAAACAGTACATGACGCAGCACGTGAGAGCGCACTCCGGGGAACGTAACTTCAAATGCGAGATTTGTTACAAGTGCTTCACGTCCAAGCAAAATATGTTGCTGCACAGGAAAGTGCACACCGGCGAGAGGAATTTTAAGTGTGGAATTTGCGACAAGCgttttacatcgaaacaaaataTGCTGCTGCACATGGAAGCGCACGcgtcgaaaggcgagatcttCGACAAATCCACGACGAAGGTGCACGGCTGCTGCGAGCAAAACTACGAATGCGAGATTTGCGGCAAGCGGTTCAAGACCAAGGCGCACTTATCGAGACACGTCGAGACGCACACCGCCGAGAAGAAATTCAAATGCGACGTCTGCAACAAGTGCTTCGCGACGAAGCGCTACATCCTGGAGCACGTGAAGACGCACGCCGTCGAGCAGAACTACCCGTGTggaatttgcaacaaatgcttcaagACGAAACAGCACCTGTCGAGGCACGTCAAGCGACACGCCGGCGAACGaaactacaaatgcgaaatttgcggcaAGCGGTTCACGGCACGCGAGTGCATGCTGGCGCACGTCAAGGCGCACACCGGCGAACGGAACTACCACTGCGAGATCTGCGGCAAGCGCTTTGCGACGAAACACCGGATGCTGCTGCACGTGGAGCGGCACACCAACGAACGCAACTACCAGTGCGACGTCTGCGACAAGCGCTTCACAACGAAGACGAACCTCTCGGCGCACGTCAAGCGGCACACCGGCGACAGGAAGTACGAGTGCGCGACGTGCCGTAAGTTTTTTGCAACGCGATACACGCTGATGCTGCACGCGAAGAGCCACACCGGCGAGCGCAACTACAAATGCGAGTTTTGCGGCAAGCGCTTCGTCACGAAGAAGTGCATCATCGCTCACACCAAGATACACACCGATAAGCGCGACCACGAGTGCGAAGTGTGCAAGAAGCGCTTCACGTCCGAGCATTACATGTTGAAGCACGTGAAAGCACACACCGGTAAAACGAACCACGTgtgtgaaatttgcgacaaatgtTGTGCGACCAAGTCGCATCTGTTGTCGCACGTCAAGACGCACGCCGGGGGAAAGTATTTCAAGTGCAAGGTTTGCGTTAAGTATTTCAGGACGAAGGAGAACCTGTTGAATCATTTGAAACTTCACGGGCGCAGGAAGAACTCGACGAAACAGAATTTGCTGCAGCATTTGAAAACCCGCAATGCACAAGGAAAATTTTCTTTGGCCACACCGGCGGCAACGGAAGAAATTGGCGAGATTGGTGAATCGTTAGTTAAGGAAGAGATCGGTGTGTTGCTGAAGAAGGACGATTGGCAGATCACCAATGACATCACGGAAAGGAATCCACCAACGGCTGCAAATGAAAGTCTTTGTGCCGCAATTAAGGACGAAAAACTCAAATCGACGGAAAATTTAGGATCATGGCTGATGCTCAACAACGAAATTGTAATCAAGGAAGAGAACATGCTGAATAACTAG
Protein Sequence
METDVYDSKRSVVAIKSESIECQILHPKLEHCYDYSHQECVIIKGECEVTAVPVTLNNVGAQNVPNPDIATDDLKIKLDFSGDDIDKGPLEQGDANESRLETAINATLMSTVKHKNVRKYSIIQHNGGYECKICFKRFKTRKITLKHVKSHGEENVCAKRKSYKCDACDKSFAAKRNMLDHLKTHTGEKNHECGICAKRFVTKQYLLRHVKTHSGERNYKCEACGKRFTTKHYMLQHFKAHDDGRRHKCEICDKSFMIRRSLLQHLKAHACKVNYECEICKRCFATKHYMLEHAKVHDDEKKPRCKICDKSFMMKRSLLKHLEAHAGRRNYKCDVCDKSFSTKHYMLEHSKTHDDERKYRCEICDKSYATKHYMLQHVKVHDDRQKCKCKFCDKSYTTKQRMLEHVEVHTKSDHRCRICDKSFAIKRNMLRHVKTHAGERNYKCEICSKCFTAKRTMLQHASVHTGEKNHKCKICGKSYSTKQYMLQHEKTHGGDRANKCEFCGKSYTTRQRMLQHVKTHTGEGDHKCETCDRSFASQRNMLQHVKMHTGERNHKCEICDKSYTTRQYMLQHVKVHTRGKKYKCEICEKSFTTNRNMLQHSKAHAGTKNYKCEICCKSFATKYYVLQHMAIHTGERKFKCEICDKSFTTKQYMLQHLAVHTVGKKYKCEICGRCFARKARLSKHVEIHGREGENCRTSTHVEESDEISKPLIKDETIDEMEINMNDCSVGVKPEAIECPTLYIKSEFCYGYEELCVKKEEYLPITDDVSSALVASNIEVKSDPGGVDSSKAHKCEICDRCFATEQLLSKHVKMHVGKGDFKCEICNKRFTTKHYMLRHVKAHTEKTNYKCEICGKCFTTKQYMTQHVRAHSGERNFKCEICYKCFTSKQNMLLHRKVHTGERNFKCGICDKRFTSKQNMLLHMEAHASKGEIFDKSTTKVHGCCEQNYECEICGKRFKTKAHLSRHVETHTAEKKFKCDVCNKCFATKRYILEHVKTHAVEQNYPCGICNKCFKTKQHLSRHVKRHAGERNYKCEICGKRFTARECMLAHVKAHTGERNYHCEICGKRFATKHRMLLHVERHTNERNYQCDVCDKRFTTKTNLSAHVKRHTGDRKYECATCRKFFATRYTLMLHAKSHTGERNYKCEFCGKRFVTKKCIIAHTKIHTDKRDHECEVCKKRFTSEHYMLKHVKAHTGKTNHVCEICDKCCATKSHLLSHVKTHAGGKYFKCKVCVKYFRTKENLLNHLKLHGRRKNSTKQNLLQHLKTRNAQGKFSLATPAATEEIGEIGESLVKEEIGVLLKKDDWQITNDITERNPPTAANESLCAAIKDEKLKSTENLGSWLMLNNEIVIKEENMLNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-