Gspi031079.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
PCED1A
Assembly
GCA_959613385.1
Location
OY390740.1:545286-552834[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 4.9e-05 0.0034 18.8 3.4 1 23 406 428 406 428 0.98
2 37 7.9e-05 0.0056 18.1 6.0 1 23 434 456 434 456 0.98
3 37 1.9e-05 0.0013 20.1 4.6 1 23 462 484 462 484 0.98
4 37 0.0022 0.16 13.5 6.0 1 23 490 512 490 512 0.98
5 37 6.2e-05 0.0044 18.4 0.8 1 23 518 540 518 540 0.99
6 37 0.0046 0.32 12.6 2.0 1 23 546 568 546 568 0.98
7 37 1.3e-05 0.00094 20.5 4.7 1 23 574 596 574 596 0.98
8 37 3.8e-05 0.0027 19.1 3.2 1 23 608 630 608 630 0.98
9 37 0.00028 0.02 16.4 7.5 1 23 636 658 636 658 0.98
10 37 7e-05 0.005 18.3 0.8 1 23 664 686 664 686 0.99
11 37 0.0034 0.24 13.0 5.7 1 23 692 714 692 714 0.98
12 37 0.00091 0.065 14.8 4.4 1 23 720 742 720 742 0.99
13 37 3e-05 0.0021 19.4 4.0 1 23 748 770 748 770 0.99
14 37 0.046 3.3 9.4 4.2 1 23 776 798 776 798 0.99
15 37 3.6e-05 0.0026 19.2 2.1 1 23 804 826 804 826 0.98
16 37 4.5e-05 0.0032 18.9 1.7 1 23 832 854 832 854 0.99
17 37 7.4e-06 0.00052 21.3 4.9 1 23 860 882 860 882 0.98
18 37 0.00029 0.02 16.3 2.0 1 23 887 909 887 909 0.98
19 37 0.81 57 5.5 0.8 1 23 1062 1084 1062 1084 0.96
20 37 0.031 2.2 9.9 0.1 1 23 1110 1132 1110 1132 0.98
21 37 1e-05 0.00073 20.9 1.6 1 23 1137 1159 1137 1159 0.97
22 37 0.00061 0.043 15.3 6.2 1 23 1165 1187 1165 1187 0.98
23 37 9.7e-06 0.00069 21.0 3.5 1 23 1193 1215 1193 1215 0.98
24 37 3.1e-05 0.0022 19.4 4.9 1 23 1221 1243 1221 1243 0.99
25 37 0.00023 0.016 16.7 4.7 1 23 1249 1271 1249 1271 0.98
26 37 6.1e-05 0.0043 18.4 4.8 1 23 1277 1299 1277 1299 0.98
27 37 5e-05 0.0035 18.7 2.0 3 23 1307 1327 1305 1327 0.98
28 37 2.4e-05 0.0017 19.7 5.0 1 23 1333 1355 1333 1355 0.99
29 37 1e-05 0.00071 20.9 5.3 1 23 1361 1383 1361 1383 0.99
30 37 0.00036 0.025 16.0 4.9 1 23 1389 1411 1389 1411 0.97
31 37 1.2e-06 8.6e-05 23.8 6.1 1 23 1417 1439 1417 1439 0.99
32 37 0.016 1.2 10.8 5.8 1 23 1445 1466 1445 1466 0.99
33 37 0.00014 0.0096 17.3 8.9 1 23 1472 1494 1472 1494 0.99
34 37 0.0047 0.33 12.5 6.3 2 23 1500 1521 1499 1521 0.97
35 37 4.2 3e+02 3.2 6.7 1 23 1527 1548 1527 1548 0.96
36 37 3.1e-05 0.0022 19.4 4.1 1 23 1554 1576 1554 1576 0.99
37 37 0.0073 0.52 11.9 4.6 2 23 1582 1603 1581 1603 0.97

Sequence Information

Coding Sequence
ATGGCGGCGGACATGTTCAACACGTCGGACTGTCGCAGAATTTTGCGCGGCAAGAGCGTTTTTCTTTTCGGCGATTCGAACATGCGCGCAATTTACAAGGACATCGTGTGGCTGCTGGAATCGCCGACTTTGATTCCTACAAGCGCGCTGCGTAAAAAAAACGAACCGTCGCACGCCAAAGACGTCTTGATCTCCGACGGCAACTTGACGAAATCGCGGAGATATCAAGAGGTCCGCGTTTACGATCGACACGGCGCGTTCTTGCATTTCGAGTTCCTGACGCGGCTGTTCGCGCCGAACTTGATCGACGCGCTGCAAAGTCCGACCGTTCGCCCCGACGTGGTCGTGCTGAACAGCTGCCTGTGGGACCTGACGCGCTGGGGCGCCGACGGCGTCGACGAGTTTAAGAAAAACCTGGCGAAGACTTTGGACTTGTGCAGGGAGAAGCTCCCGCGGGGCACGCGCGTCGTCTGGACGACGACGCTTCCGCCGAGTTTCAAGTCGCGCGGCGGCTTTCTGACGCCCGGCGTCgatttcatgaaaaatttgcTGCCGTTTCACGTGATCGAAGCGAATAACTACGCCGCGTGTCTCGTGCACAGTTACGGTTACGACGTCGTCGATTTGCACTATCACATGAGGTTCTTGATCGACATGAGGAGCGCCGACGGCATACACTGGGAACCGAAGCCGCTGAGATACGTCGCCAATTTGATTTTGACGCACGTTTGTTTGGCGTGCGACATGCGATTGCCGGGCAACGTCGCGATCGACGCGGCGTTCTTGAACAGATCCCATAGGCCGGTGGAGCAAAACGCAAGTCTGGCGATCCAAGTCGACCGTGTCGGGAATGGCAAGAGCAAACGACGAAAAAGGTGGAACGATCGCAAGTACTACAATTTTCACGGCCGACCCAATTTTCGCGATAAAATGGAGAAGATGAGCGATTTCGAATTTACGAACGTTGGTGAATTGCTAGAACGTACAACTTTGTTTCCAAAAATGTCTGTCGATGGATATTCCAATTGTAATGAAATTGACCATAAAGAAGAACGATGTGATGTTATTATAAAACAAGAGGAATATCTTGTGCCGATGACGCAGGATGACGCAGGAAATGTTACTGAAATTATATGTAATGATATCAAGTTGGATGTCACTGGTTTGTTAAAATCTTGCGGCGACGACGAGCTCGTCGAACGAGATAGGTCGAgtcataaatgtgaaatttgcaacaaacgcTTCGCAAGAAAACAATACCTATCCGAACACGTCAAgacgcacaccggcgagagaAACCACAAATGCGAAACATGCACCCGAACCTTCACAACGAAACAGAGCCTATCGCGGCACCTCAAGACGCACGTCGGCGAAAAAAACCACAAGTGCGAAACTTGCGGCAAACGCTTCACGACGAAACAGAGCCTGTCGCAACACGTCAagacgcacaccggcgaaagaaaccACAAATGCGAAACTTGCGACAAACGCTTCAGGACGAAACACCGGCTGTCGGAACACGTCGAGACGCACACCGGCGAGCGAAACTACGAATGCGACGTTTGCGTCAGACGCTTCGTCACGAAACAAAGCCTGCTGCGACACGTCAAGACGCACGCGTCGCAAAGAAACcacaaatgcgaagtttgcgACAAGCGCTTCTTGACGAAACGAGATCTGTCGTTGCACGTCGAGACGCACACCgcggaaaaaaatcacaaatgcgaaatttgcgacaaatgtTTCGCGAGAAAGCCGTATTTGACGCAACACGTCAAGACGCACGGTGGGGATAAACGAATTTCGAAAGAAAGGACTCACAAATGCGAACTTTGCGACAAGTCGTTTGCTAAGAAGCGAAATTTATCGCTGCACGTCAAGACGCACGCCGGGgtaagaaatcacaaatgcggGACTTGCGGGAAATGTTTTAGGACGAGGCAACATCTGACGCTCCACGTCGagacgcacaccggcgaaaaaaattacaagtgcaAGATTTGCGACAGACGCGTCGCGACGAAGCAGAGTTTATCGCGACACGTCGAGACGCACACCGGGGAGAGGAACCACAAATGCGAGACGTGCGAAAAACGATTTGTGACGAAACACCGGCTGACCGAACACGTCAAGATGCACGTCGCGGAGAAAGATTACAAATGCGAGACTTGCGATAAATGCTTTGGAACCAGGCAACGTTTGTTCGAACACGTCAAGACGCACACCGGAGAAAGGAATTATAAGTGCGAGGTCTGCGAGAAACGCTTCAGGAGAAAACAGCATTTGTCGCTTCACGTTCAAACGCACGGCGGAGAGAAAAGTTTCAAGTGTCTTCTTTGTTGCAAGTCGTTTGTAACGAAACAGAGTCTGTCGCTCCACGTCAAAACGCACGACGGAGAAAGGAagtttaaatgtgaaatttgcgacaaatgctttgcgacgaaacaatatttgtcGCTTCACGTCGAAATGCACACAGGCGAGagaaattacaagtgtgaaGCTTGCGACAAGTCCTTCACGACGAGACAATATCTTTCGCTCCACGTCAAGACCCACACCGGAGAAAGGAACTATAAATGTGACATTTGCGATAAATGCTTCGCAAGGAAACAACATTTATCGCGACACGTTAAAGCACACGGGGACTTAAatcataaatgtgaaatttgcgaccagacttataaaaaaataaaagcgttgctggAACATATGAAAACTCATAATAAAGAAAGCAACGAATCAAAGTTTCCAAGGACCACGCCAACCGCTACAATCGAAGACGGCGCGATTGATAATCCGTTTATTAAGAAAGAAATTGGTGTATTCTTAAACACAGACAAGTTGAAAATAGACAATGGTAATATGGAAATCGATGTGGATAAGTCTAACGCGGTCATTGGAGTAAAATCTGAACCTGTAGATACGACGATTCTGTTCGATTACGGGTATTCTCATATCGAAGTTGATGACAAAAATGGAGTCGTCATAAAGGAGGAATATGATGACGATACTTCCGTCGGTGCGGGGCAAAATGAAAGTGACGTCAAAATTAAGTCGGACGTCTGCGACGGCAATTACTCGTCGTGCGAAATTCCAAAGCCGGGTGATATCgaaatactaaataattttaaaacgagccatattttaaaattcacgaCGGCACTCGGCAAAGAAAGGTACAAGTGCAAAATTTGcctcaaaaattcgaaaacgatGAAAGCTATACTCGATCATGCGAAATCGCACATCGAAGACAAAGTTGCGGCTGCGGCTTTCACCGTGATGTTGGAAAGAAGCGAAATGTGCgtcgatgaaaaaaattacaagtgtgaCATTTGCGCGAAGTTATTCGCGACGAGGGGAATTCTTCGAAGCCACGTGGAGACGCACGGCGAGAGAAACTACAATTGCGAAGTTTGCGGCAAACGCTTCACGACGAAACAGAGTCTGTCGCGACATTCCGAAACGCACACCggagaaaaaaatcacaagtgcgaaatttgcgacaaacgcTTTGCGACGAAACGATGCGTATCGCGACACCTAAAGACGCACACCAGCGAGAAAAACCataaatgcgacgtttgcgaCAAATCATTCACGAGACGACAGTATTTATCGCGACACGTCAAGATACACAACgccgaaagaaattacaagtgcgacGTTTGCAATAAGTGTTTTACGACGAAGCAATATTTGTCGTTGCACGTGAAGACGCACACCGGCGAACGGAATcacaaatgcgagatttgcgACAGATTCTTCACGACGAAGCAGCATTTATCGCTGCACGTGGAGACGCACGCAAcggaaaaatattacaaatgcgagatttgcaATAAGTGCTTCACGACGCGACAACATCTGTCGTTGCACGCCGCGACGCATTCGGGAGAAAGGAATTACGGGTGTAAAACTTGCGACAAGCGTTTCACGACGAGACAGTATCTACTGCAACATGTCAGGACGCACAGCGGCGAGAAAAActtcaaatgtgaaatttgcaacaaatgcttcacgacGAAGCAGTATTTATCGTTGCACGTCAAGACGCACACGGGCGAACGAAActtcaaatgtgaaatttgcgacaaatgcttcaTAACGAAACAACACCTCTCGCTGCACGTAAGGACGCACACCGCGGAAAGATACTACAAGTGCGAGATTTGCAAAAAGTGCTTCACGACGAAGCAAAGTCTGTCGTTGCATTTCGGGACGCACGCCGccgaaagaaattataaatgcgacgtttgcgaCAAGTCCTTCACAACGACGCACCACCTAATGCGGCACATTAAAACGCACACCGCCGAACGGAACTACAAATGTCAAACATGCGATAGATATTTTACGAAGCAACATCTATCGCAGCACGTCAAGACGCACACCGGCGAACGATactacaaatgcaaaatttgcaataaacgcTTCACCAGAAAACACTGCCTATCGCTGCATCTGAAAACGCACACCGACAAGAgaaataaatgcgaaatttgcaataacTGCTTTGCGACGAAACATCATCTACTGCGACACGTCAAAGCGCACGCCGGAGAAAAGAaccacaaatgcgaaatttgcagtAAATACTTCACCGAACAGCACCTGCCGCACCACGTCAAAACCCACACCGGCGAAAGGAACTACAAGTGCGAGATTTGCGCGAAACGCTTCACGAGGAAACACTCCCTGTCGCTGCATTTAAAGACGCACAGCGACGAAAgaaacaaatgcgaaatttgcaatgTTTGCTTCACGACGAAGCAACATCTATTGCTGCACAACGAAACGCACGgcggagaaaaaaattataaaccatcTTTCGTGGAACATGACGTGAAAATTGAAGAAAGCGTCGGGGAAGACTGTCTTCGAATCTTTCCATGCATCGCGCCGACGACGTACACAACTGAAGAAATTAACGACATTGAGAAACTGTTCGTTAAGGAAGAGCCTGCCACGTTCGTAGAAAATGAGTTCGTCGACAGGGATACTACAGAAACGAAACCATCAACGGGTACGAATGAAAATGGTTTTGATCCTGCCGTTAAGGAAGCTCACCCTAAATCACTTCACAGTGAGATCATCGTTAAAGAAGAGCAATTAAGTGACATACAATAG
Protein Sequence
MAADMFNTSDCRRILRGKSVFLFGDSNMRAIYKDIVWLLESPTLIPTSALRKKNEPSHAKDVLISDGNLTKSRRYQEVRVYDRHGAFLHFEFLTRLFAPNLIDALQSPTVRPDVVVLNSCLWDLTRWGADGVDEFKKNLAKTLDLCREKLPRGTRVVWTTTLPPSFKSRGGFLTPGVDFMKNLLPFHVIEANNYAACLVHSYGYDVVDLHYHMRFLIDMRSADGIHWEPKPLRYVANLILTHVCLACDMRLPGNVAIDAAFLNRSHRPVEQNASLAIQVDRVGNGKSKRRKRWNDRKYYNFHGRPNFRDKMEKMSDFEFTNVGELLERTTLFPKMSVDGYSNCNEIDHKEERCDVIIKQEEYLVPMTQDDAGNVTEIICNDIKLDVTGLLKSCGDDELVERDRSSHKCEICNKRFARKQYLSEHVKTHTGERNHKCETCTRTFTTKQSLSRHLKTHVGEKNHKCETCGKRFTTKQSLSQHVKTHTGERNHKCETCDKRFRTKHRLSEHVETHTGERNYECDVCVRRFVTKQSLLRHVKTHASQRNHKCEVCDKRFLTKRDLSLHVETHTAEKNHKCEICDKCFARKPYLTQHVKTHGGDKRISKERTHKCELCDKSFAKKRNLSLHVKTHAGVRNHKCGTCGKCFRTRQHLTLHVETHTGEKNYKCKICDRRVATKQSLSRHVETHTGERNHKCETCEKRFVTKHRLTEHVKMHVAEKDYKCETCDKCFGTRQRLFEHVKTHTGERNYKCEVCEKRFRRKQHLSLHVQTHGGEKSFKCLLCCKSFVTKQSLSLHVKTHDGERKFKCEICDKCFATKQYLSLHVEMHTGERNYKCEACDKSFTTRQYLSLHVKTHTGERNYKCDICDKCFARKQHLSRHVKAHGDLNHKCEICDQTYKKIKALLEHMKTHNKESNESKFPRTTPTATIEDGAIDNPFIKKEIGVFLNTDKLKIDNGNMEIDVDKSNAVIGVKSEPVDTTILFDYGYSHIEVDDKNGVVIKEEYDDDTSVGAGQNESDVKIKSDVCDGNYSSCEIPKPGDIEILNNFKTSHILKFTTALGKERYKCKICLKNSKTMKAILDHAKSHIEDKVAAAAFTVMLERSEMCVDEKNYKCDICAKLFATRGILRSHVETHGERNYNCEVCGKRFTTKQSLSRHSETHTGEKNHKCEICDKRFATKRCVSRHLKTHTSEKNHKCDVCDKSFTRRQYLSRHVKIHNAERNYKCDVCNKCFTTKQYLSLHVKTHTGERNHKCEICDRFFTTKQHLSLHVETHATEKYYKCEICNKCFTTRQHLSLHAATHSGERNYGCKTCDKRFTTRQYLLQHVRTHSGEKNFKCEICNKCFTTKQYLSLHVKTHTGERNFKCEICDKCFITKQHLSLHVRTHTAERYYKCEICKKCFTTKQSLSLHFGTHAAERNYKCDVCDKSFTTTHHLMRHIKTHTAERNYKCQTCDRYFTKQHLSQHVKTHTGERYYKCKICNKRFTRKHCLSLHLKTHTDKRNKCEICNNCFATKHHLLRHVKAHAGEKNHKCEICSKYFTEQHLPHHVKTHTGERNYKCEICAKRFTRKHSLSLHLKTHSDERNKCEICNVCFTTKQHLLLHNETHGGEKNYKPSFVEHDVKIEESVGEDCLRIFPCIAPTTYTTEEINDIEKLFVKEEPATFVENEFVDRDTTETKPSTGTNENGFDPAVKEAHPKSLHSEIIVKEEQLSDIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-