Gspi031078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:539182-544503[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.00013 0.0093 17.4 4.1 1 23 112 134 112 134 0.99
2 31 6.4e-07 4.5e-05 24.7 0.8 1 23 140 162 140 162 0.99
3 31 0.00092 0.065 14.7 2.8 1 23 168 190 168 190 0.98
4 31 4.6e-06 0.00032 22.0 4.5 1 23 196 218 196 218 0.98
5 31 0.00054 0.038 15.5 4.4 1 23 224 246 224 246 0.98
6 31 0.00057 0.04 15.4 3.0 1 23 252 274 252 274 0.98
7 31 7.5e-08 5.3e-06 27.6 1.8 1 23 280 302 280 302 0.99
8 31 0.00012 0.0083 17.6 3.2 1 23 308 330 308 330 0.99
9 31 3.2e-06 0.00022 22.5 0.4 1 23 336 358 336 358 0.97
10 31 2.3e-06 0.00017 22.9 0.7 1 23 364 386 364 386 0.98
11 31 1.3e-05 0.00092 20.6 2.0 1 23 392 414 392 414 0.98
12 31 0.004 0.29 12.7 8.3 1 23 420 442 420 442 0.98
13 31 2.4e-06 0.00017 22.9 5.0 1 23 448 470 448 470 0.99
14 31 8.4e-06 0.00059 21.2 6.1 1 23 476 498 476 498 0.99
15 31 9.5e-07 6.7e-05 24.1 1.3 1 23 504 526 504 526 0.99
16 31 0.012 0.87 11.2 5.4 1 23 532 554 532 554 0.97
17 31 1.1e-05 0.00081 20.7 6.2 1 23 560 582 560 582 0.98
18 31 4.2e-06 0.00029 22.1 1.7 1 23 596 618 596 618 0.99
19 31 9.5e-06 0.00067 21.0 0.6 1 23 624 646 624 646 0.99
20 31 6.5e-06 0.00046 21.5 2.1 1 23 841 863 841 863 0.98
21 31 0.041 2.9 9.5 8.3 1 23 869 891 869 892 0.94
22 31 0.031 2.2 9.9 0.9 1 23 898 920 898 920 0.96
23 31 6.9e-05 0.0049 18.3 0.0 1 23 924 946 924 946 0.97
24 31 5.4e-06 0.00038 21.8 0.2 1 23 952 974 952 974 0.98
25 31 3.7e-05 0.0026 19.1 0.2 1 23 980 1002 980 1002 0.98
26 31 0.0076 0.54 11.8 2.2 2 23 1009 1030 1008 1030 0.98
27 31 4.4e-05 0.0031 18.9 2.8 2 23 1037 1058 1036 1058 0.98
28 31 2.2e-06 0.00016 23.0 1.4 1 23 1064 1086 1064 1086 0.98
29 31 3.1e-07 2.2e-05 25.7 7.2 1 23 1092 1114 1092 1114 0.99
30 31 0.00014 0.01 17.3 4.4 1 23 1125 1147 1125 1147 0.99
31 31 2.2e-06 0.00016 23.0 0.7 1 23 1153 1175 1153 1175 0.99

Sequence Information

Coding Sequence
ATGGAGGTTGATGTGAATGATACCAAGTCGGATATCGAAATAAAATCTGAAACCGTGGAGTCTTGCTATGGATATTCTTGTAATGACGTTGACGacgaaaaaatgaaatgtgGTGTTACTGTAAAGGAAGAGAAGTACGAAGTTTCAAACAGTGACATAGCACCGAACGATATCAAAATTAAGTTGGACGTCAGCGACGGCAATGATTTATTGAACTTGAAAACAAGAGAATTTACATTGGAAGATAATAAATTACACACCGAAGAAAAAATCGAAGGTGATATCGACGAgggaaactacaaatgtgacaAGACACAcgttgacaaaattaaatacgaaTGTGAAACGTGCCACAAACGCTTCACGAGGAAACTGTATCTGTCGGTGCACGTCAAGACGCACaccggagaaaaaaattacgaatgcgACGTTTGCAACGTCCGTTTCGTAACGAAATCAAATCTAACTCGACACGTCAAaacgcacaccggcgagaaagatcacaagtgcgaaatttgcggcaAACACTTGACGACGAAACGCGGCCTGTCCAACCACGCAGAAACGCACGCCAGAGAAAGAaaccacaaatgtgaaatttgcgccAAATCCTTCGTGACGAAATCGAATCTAACGCACCACGTCAAAACGCACGCAGACGACAGAAACCacgaatgcgaaatttgcaagaaaGTCTTCAGAACGAGGCAGGTTCTGTCCCACCACGTCAAGACGCACACCAGAGGGagaaatcacaaatgcgaaatttgcgacaagCACTTCATAACGAAACAAGTTCTGTCCCAGCACATCGTGACGCACACCGGAGAACGAAACTACAAGTGCGAAACTTGCGACAAGCGTTTCACGACCAAGTCGAACCTAACGGAACACGTCAGGGTGCACACCGgagaaaaaaactataaatgcgAAACGTGCAACAAGTGCTTCGTTAGGAAACTCGGTCTGACGCTGCACGTCAAGATGCACACCGGCGAGAAAAATTacgaatgcgaaatttgcaacaagCGCTTCACGAGGAACCAAAATCTGGCGGAACACGTCAAGGCGCACAACGGGGAAAAAAGTTACGAGTGTGAAATTTGCGGCAAACGCTTTGCGGCGAAATCGAATCTTTCGCACCACGTCAAGATACACACCGGCGAAAGGAAccacaagtgtgaaatttgcgacaaacgcTTCGCCACGAGGCAAAATTTGTCGCAGCACGTCGACACGCACACCAGACGGAGGAATCACAAATGCGAACTTTGCGAGAAACGCTTCACGACGAAACAACATCTGTCGTACCACTTCAAAACGCACACCGccgaaagaaattataaatgcgaagTTTGCGACAAATCCTTCACACGAAAGCAACACCTATCGTACCATTTAAAAAcgcacaccggagaaagaaacTACAAGTGCGAAACTTGCGGCAAACGCTTCATAACGAAGCAGCATCTGTCGCACCACGTCAGGACGCACGCCGGAGAAAGAActtacaagtgcgaaatttgcggcaAACGTTTCGTAACGAAACCGAATCTGTCGCACCACGTCGAAACACACACCAGgggaaaaaatcacaaatgcgaaatttgcaataaacacTTCGCGACGAAACAAGTTCTGTCGCACCACGGGGAAACGCACGCCggagaaagaaatcacaaatgcgaaACGTGCGACAAACGCTTTGTGACAAAATCGAATCTTTCGCACCACGTAAAAACGCACTCGAAAGTGAGAAGTTGCAAATCTGGCGTCGTAAGAAATTacgaatgtgaaatttgcgagaAACGCTTCACGACGAAACAAAATCTATCGTACCACGTCAAAACGCACACAGGAGACAGACGctataaatgcgaaatttgcgacaaacgcTTCATAACAAAACCGAGTATGTCGCAGCACATCAAGATACATTCGAGAAAAGTGTCGTTGGAACATGCGAAAGTATACACCGAAGGAAACAAGAAGGAAGAGGCTGTACAAAGCTTTCCGTATACAAGAGAAGAAATTGATATCGATAAAGAGTTCATTAAGGAAGATCCTGGTGCATTCATGAATGAAGATAATTCGGAGAACAACTCTGATAGTGCAGAAAGAAAACCATCGACGGCTACAAATGAAAATCGTATTGATCCTGCCGTTGAGGAAGACGACCCTAAATCAATCCACAGTAAAATGGAGATTGATGCGCACGATTCCAAATCTGTCATCGAAGTCAAATCTGAAACGATGGATTCTGTAATTTTGTTCCCAAAACTGGAGTCTTGCTATGGATATTCTTGTAATGACGTTGacgacgaaaaaattaaatgtgttacTGTAAAGGAAGAGAAGTACGAAGTTTCAAACAGTGACGTCGGTGATGATTTATTGAACTCAAAAACAAGAGAGTTTAAATTGGAAGATCATCAATCGCACAGAAATTCCATCAACGAAAAAAATAACGCAAGATTATTACCAACGAAAATTTTTCAGAATCAAACGGTCAAAACTAACCacgaatgtgaaatttgcaacaaatccGCAACAACGAAATCAAATCTATCGCGACACGTCAAGACGCACACGCGAGGACGAACttacaaatgcgacgtttgcgaCAAGTGCTTCACAACGAAACACGCCCGATCGTATCACAACGAAACGCACCACAACGCCGAGACAAACCACAAATGCGACATTTGCGACAGATACTTCACAATGAAACTCGTTCTAGAGCTACACGTCAAAGCGCACACCACAAATTacgaatgcgaaatttgcggAAAACGCTTCCCGACAAACGCACGTCTATTGGCGCACGCAGTAACGCACAccagggaaaaaaattacaagtgcgaaatCTGCGGCAAAGGCCTCACGACGAAATCGAATCTGTCGGTGCACGTCAAAGCGCACGCCGGACAAAAGaactacaaatgcgaaatttgcgacagGCGCGTCGCGACCAAACAAGCGCTGACGCGACACGTCGCGACGCACACCGGACAAAGAAGGcagaaatgcgaaatttgcgacaagTACTTGTCGACGAAAGAATGTCTGTCGTACCATCTCGAAACGCACGCcgtagaaaaaaattctaaatgcgaaatttgcaacaaacgcTTCGCATCAAAAGCTTGTTTATCGAATCACGTCAGGACGCACACCAGAGAAAGAaactacaagtgcgaaatttgcgagaAACGCTTCACGACGAGACAAAATCTATCGCGACACGCCGAAACGCACGgcggagaaaaaaattacaaatgtgaaatctgcaacaaatgcttcaagACCAAATCGAATCTACTGCACCACATAAAGACGCACGCCAGAGAAAGAAATCgtaaagaaagaaattacaaatgtgaaatttgcgagaAACGCTTCACGATGAAACAACATCTATCGTACCACGTCAAAACGCACACCGGAGACAGACGttataaatgcgaaatttgcgacaaacgcTTCATAACGAAACCAAGTCTGTCGCAACACCTCAAGGTACATTGTAGAAAAGTGACGGAACATGTGGAAATACACATAGAAGATAGCAAGATGGAGCCTCTTCGAAGTTTTCCATGTATTGTACCGACATCTGCGACACATGAAAGCATTGACATTGATAAACAGTTCATTAAGAAAGAGGCTGGTGCATTCCTGAATGAAGATAATTCGGAGTACAATTTCGATACTGCTGAAAGAAAACCGTCAACAGTTACGAATAAAAATCGTATCGATCCTGCCGTTAAGGAAGATGACCCCAAATCACTCCACACCGAGATTATGGTCAAAGAAGAACACCTAAGTGACGCGCAATAG
Protein Sequence
MEVDVNDTKSDIEIKSETVESCYGYSCNDVDDEKMKCGVTVKEEKYEVSNSDIAPNDIKIKLDVSDGNDLLNLKTREFTLEDNKLHTEEKIEGDIDEGNYKCDKTHVDKIKYECETCHKRFTRKLYLSVHVKTHTGEKNYECDVCNVRFVTKSNLTRHVKTHTGEKDHKCEICGKHLTTKRGLSNHAETHARERNHKCEICAKSFVTKSNLTHHVKTHADDRNHECEICKKVFRTRQVLSHHVKTHTRGRNHKCEICDKHFITKQVLSQHIVTHTGERNYKCETCDKRFTTKSNLTEHVRVHTGEKNYKCETCNKCFVRKLGLTLHVKMHTGEKNYECEICNKRFTRNQNLAEHVKAHNGEKSYECEICGKRFAAKSNLSHHVKIHTGERNHKCEICDKRFATRQNLSQHVDTHTRRRNHKCELCEKRFTTKQHLSYHFKTHTAERNYKCEVCDKSFTRKQHLSYHLKTHTGERNYKCETCGKRFITKQHLSHHVRTHAGERTYKCEICGKRFVTKPNLSHHVETHTRGKNHKCEICNKHFATKQVLSHHGETHAGERNHKCETCDKRFVTKSNLSHHVKTHSKVRSCKSGVVRNYECEICEKRFTTKQNLSYHVKTHTGDRRYKCEICDKRFITKPSMSQHIKIHSRKVSLEHAKVYTEGNKKEEAVQSFPYTREEIDIDKEFIKEDPGAFMNEDNSENNSDSAERKPSTATNENRIDPAVEEDDPKSIHSKMEIDAHDSKSVIEVKSETMDSVILFPKLESCYGYSCNDVDDEKIKCVTVKEEKYEVSNSDVGDDLLNSKTREFKLEDHQSHRNSINEKNNARLLPTKIFQNQTVKTNHECEICNKSATTKSNLSRHVKTHTRGRTYKCDVCDKCFTTKHARSYHNETHHNAETNHKCDICDRYFTMKLVLELHVKAHTTNYECEICGKRFPTNARLLAHAVTHTREKNYKCEICGKGLTTKSNLSVHVKAHAGQKNYKCEICDRRVATKQALTRHVATHTGQRRQKCEICDKYLSTKECLSYHLETHAVEKNSKCEICNKRFASKACLSNHVRTHTRERNYKCEICEKRFTTRQNLSRHAETHGGEKNYKCEICNKCFKTKSNLLHHIKTHARERNRKERNYKCEICEKRFTMKQHLSYHVKTHTGDRRYKCEICDKRFITKPSLSQHLKVHCRKVTEHVEIHIEDSKMEPLRSFPCIVPTSATHESIDIDKQFIKKEAGAFLNEDNSEYNFDTAERKPSTVTNKNRIDPAVKEDDPKSLHTEIMVKEEHLSDAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-