Gspi031601.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:3944176-3950726[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 1.3e-06 9.5e-05 23.7 4.2 1 23 10 32 10 32 0.99
2 39 3.2e-06 0.00023 22.5 1.4 1 23 38 60 38 60 0.98
3 39 9e-06 0.00064 21.1 2.1 1 23 66 88 66 88 0.98
4 39 6.3e-06 0.00044 21.6 1.6 1 23 94 116 94 116 0.98
5 39 4.4e-05 0.0031 18.9 3.3 1 23 122 144 122 144 0.99
6 39 6.4e-07 4.5e-05 24.7 3.4 1 23 150 172 150 172 0.98
7 39 4.5e-06 0.00032 22.0 0.6 1 23 178 200 178 200 0.98
8 39 4.4e-06 0.00031 22.0 3.8 1 23 206 228 206 228 0.99
9 39 0.036 2.5 9.7 0.5 1 15 360 374 360 377 0.88
10 39 0.0002 0.014 16.8 5.4 3 23 388 408 387 408 0.97
11 39 7.9e-05 0.0056 18.1 1.2 1 23 414 436 414 436 0.92
12 39 0.012 0.82 11.3 1.9 1 23 442 464 442 464 0.98
13 39 0.0031 0.22 13.1 1.9 1 23 470 492 470 492 0.98
14 39 2e-06 0.00014 23.1 4.2 1 23 498 520 498 520 0.99
15 39 1.6e-06 0.00012 23.4 2.2 1 23 526 548 526 548 0.99
16 39 5.4e-05 0.0038 18.6 3.9 2 23 555 576 554 576 0.96
17 39 7.9e-06 0.00056 21.2 4.0 1 23 582 604 582 604 0.98
18 39 0.014 0.98 11.0 1.4 1 23 610 632 610 632 0.98
19 39 5.5e-06 0.00039 21.7 2.5 1 23 638 660 638 660 0.98
20 39 5e-05 0.0035 18.7 2.9 1 23 822 844 822 844 0.98
21 39 0.013 0.91 11.1 5.1 1 23 862 884 862 884 0.98
22 39 1e-06 7.1e-05 24.1 1.6 1 23 908 930 908 930 0.99
23 39 0.00078 0.055 15.0 4.8 1 23 936 958 936 958 0.99
24 39 5.1e-07 3.6e-05 25.0 1.3 1 23 964 986 964 986 0.99
25 39 2.8e-05 0.002 19.5 2.4 1 23 992 1014 992 1014 0.99
26 39 1.7e-05 0.0012 20.2 2.4 1 23 1020 1042 1020 1042 0.99
27 39 9.7e-06 0.00069 21.0 3.9 1 23 1048 1070 1048 1070 0.99
28 39 2.5e-05 0.0018 19.7 4.4 1 23 1076 1098 1076 1098 0.99
29 39 3.5e-06 0.00024 22.4 1.6 1 23 1104 1126 1104 1126 0.99
30 39 0.00076 0.054 15.0 2.5 1 23 1132 1154 1132 1154 0.98
31 39 3.8e-06 0.00027 22.2 1.4 1 23 1160 1182 1160 1182 0.99
32 39 6.1e-06 0.00043 21.6 2.2 1 23 1188 1210 1188 1210 0.99
33 39 1.4e-06 9.6e-05 23.7 2.2 1 23 1216 1238 1216 1238 0.99
34 39 7.5e-05 0.0053 18.2 3.9 1 23 1244 1266 1244 1266 0.98
35 39 0.0007 0.049 15.1 2.9 1 23 1272 1294 1272 1294 0.99
36 39 2.3e-05 0.0016 19.8 3.9 1 23 1300 1322 1300 1322 0.99
37 39 0.00033 0.023 16.1 3.4 1 23 1328 1350 1328 1350 0.98
38 39 2.1e-05 0.0015 19.9 0.9 1 23 1356 1378 1356 1378 0.98
39 39 0.00012 0.0082 17.6 2.0 1 23 1384 1406 1384 1406 0.98

Sequence Information

Coding Sequence
ATGAGAACACACAACGGCGAgagaaattacaagtgcgaaacttgcgacaaatgcttcacGAGGAAAGAGCAACTAACGAATCACGTCAAGATACACACCGGCGAAAAGAATTACAGGTGCGAGATTTGCACGAAGCGCTTCACGGAAAAAAGTAATCTATCGGCTCACACGAAAATACACAACGGCGAAAGAAATTACATGTGCGACGTTTGCACTAAATGCTTCACAGGTAAAGGTGATTTGTCGaagcacatgaaaatacacaccggtGAGAGAAATTTCAggtgcgaaatttgcgacaagTGCTTTACGGCGAACGGTGATCTGTTGAAACACACGAGAATTCACACtggtgaaaaaaattaccggtgcgaattttgtaataaatgtttcacGGCGAGAAGTAGTTTGTCGATTCACTTGAGAATACACACTGGTGAGAGAAAtcacaagtgtgaaatttgcgacaaatgcttTATAACGAGAGGGGATCTTTTGAAACACATGCGGATACACACCGGCGAAAGGAACTACGAGTGTGGTGTTTGCGCGAAACGCTTCACGACGAAAAGCAATCTATCGAGTCATATGACGATACATACCGGTGAAAGAAgttacaagtgtgaaatttgcagcaaatgcttcaaaacaaaacaaaatcttttGTCGCATCTGAATGTGCACACTGGAAAGAAGCACGTATTGTTGACATTTAACAAATCGGGCACTGAAGAAAACGAGGAACAGCCCTCACCATGTAACATAATTGTGGGCAAAATTGAAAGTGGATTGATCAAAAAAGAAACTGCTGTACCcataaaaaaggaaaagttgAATATCGACAATGATAAAATGGAGGTTAACATAAATGATTCCAAGTGCACAATTGCCGAAGTGAAAGTTGAAAGAGCAGAATTTGCAACTGCAATCCAAAAACCAGAGTATTTTGATTATGAAATGgagcacaaaaatgtaaaagaagagaaatatgtaaatgatTCTGGATCAGAAACAACTTTTGATCGAAGAGTTTCACAGAGTACTTCAAAAACTGGTATTGAATCGTCGAAAATAAGCCAccaatgtaaaatttgcaatacgtCATTTTCATCATCAACAGACGTAACTGATTACATCAAAATGCACGGTGAAGCAAACCATTGTTGCATCTGCACGAAATCGTTCGCCCGAAAAGACTACCTGTTGAAACACATGAAGATACACGTCGGTGAGAAAAATCACGCCTGCGAAATCTGCACGAAACGATTCGTCCGAAAAGACGACCTCAAAAAACACGCGACGGCGCACACCTACGAAAGAAACCACGAATGCGACGTTTGCGCCAAACGCTTCAAGTCGAGTCAAATCCTGACGCAGCACGTGAAAACGCACACCCGCGAAAAAACtcacaagtgcgaaatttgcgccaGACTTTTCGCGATGAGGCAGAACCTGCGGCGACACGTGAAGTCGCACTTGGCcgagaaaaattacaaatgtgaaatttgcaccaaGTGCTTCAAAAACAAGGAAAATCTGTCCAAACACGTGAAGATACACACGAACGAGCGAAACTACAAATGTAAAGTTTGCAACAAGCGTTTTCGAACAAGCCCGAATCTGCTGCAGCACGTCAAGACCCACGCGAGCGAACGAAACTGCAAATGCGAAACTTGCGGCAAGTGCTTTCCGACGCAGCGGAATTTATCGGAGCATGTGAACGTGCACACGGGCGAGGGGAAACACAAGTGCGACATTTGCGGCAAACGGTTCACGAGGAAACGGAACATGCTACGGCACGTGACGACTCACAGCGGCGAGAGGAATTACAGCTGCGAAGTTTGCGCCAAGCGCTTCAGAAGTAAACAAATTCTGGTGCAACACAAGAAAACACACAccggtgaaaaaaattacaaatgtgaaatttgcggcaAATGTTTCAGGACGAAAGGAACTATGCTGCAACACGTAAAAATTCACGCCAGTGAAATGGATTGCAAGGGTGAAAACATGTGTTTCAAACATAAAACGCATGTGGGAGGAACCAATAAAGAAGAGTCTCTCCGTACATTTCCATATAGGCAACTGATCAAGAAAGAGACGTCATTGATTGTGAAAGAAGAAAAAGTGGAGTTCGACGATGGAAAAATGGATATTGAAAGAAAGGATTCCCACTGCACAATCACAGAAGTAAAATCTGAACCAACAGAATTTGCGATCCTCGTCCCAGAACCAGAGGTTTATTGTAGCTATTCTCATGTggaaattaacaagaaaaacattGATAACTCTGTAATAAAACAAGAGGAATACATCGATACTTCTGCAGAACTCCATACCAGTGTTATCCACAACGACACCAAAATTAAGTTTGAATTCAGTGAACATGCACACTTTTCAGACGACAACAAAAGGCTAAGCCTAAACCCGAGTGAAAGTGGTCTCCAAACACCACAAATACGTCACGTGTGtaaaatttgcacgaaattgTTTTCGACGCAAATCGAATTAACGAAGCACATTAAAAAGCACAAGAATTGCGTCGGAAGTTTTAAGTGCGCGATAATACGCGGTAACAAACTCTACAAGTGCAAAGTTTGCTTCAGGTTTTTCAAAACGAGGAAAAGCGCATCGAAACACACGAGATTACACGACGAAGAAAAAGTGCACGGAGGTGTGATTTGCGCAAGGAAAAAATACATACGCACCAACgaaaacaattacaaatgtGACGTCTGCAACAAACGCTTCGCGAGAACGGACAACTTATCGAGACACGTCAAGACGCACGACAGCGaacgaaattacaaatgcgaaatttgcgcgaAACGCTTCAAAACGAAACAGTGCATATCGAACCACATGAAAACGCACACCGGCGACCGAAATTACGAGTGCGAAGTGTGCGGCAAGCGCTTCATACAAAAGTTCCAGCTGTCGAGTCACATGAAaacgcacaccggcgagaggaactacaagtgcgaaatttgcggtAAATGCCTGACGACGAAGCAGAGCCTATCGACCCACGTGAAGATACACTCCGGCGACAGCAACTACcagtgcgaaatttgcacgaaacGCTTCACCACGAAGCAATACCTGTCGATTCACAGGAAAATTCACACCAGCGAGAGAAACTACAAGTGCGAGATTTGCGCGAAGTGCTTCACGAGAAAATACAGTCTGTCGAACCATTTGAAAATTCACGTCGGCGGGAGCAATTACAAATGCAGGACTTGCAACAAGTGCTTCCCTACGAACGAGTATTTAACGAGACACGTCAAGATACACGTCgtcgaaagaaattacaaatgtgaaatttgcgctAAACGCTTTAAAACGCAGAACGGTCTGTCGAATCACATGAAGACGCACACCGCCGATAGGAATTACCGGTGCGAGATTTGCAACAACTGCTTCGTGCGAAAAGCGAACTTACTGTTTCATATGAAAATTCACACtggcgaaagaaattacaaatgtgaagtttgtggCAAGCGTTTCATTCAGAAATTTCAACTGCTGAACCACACGAAAATACACACCAGCGAGAGGAATTATAAATGTGAGATTTGTGCAAAATGCTTTGTAAGGAAAGTCAGTCTATCGAatcacatgaaaatacacacgGGCGacagtaaatataaatgtaaaatttgcaataagtcCTTCACGACGAATCAAAGCGTGTTGCGCCACATGGAAACGCACACTGGCGTAAGAAGTTACATATGTGAAACCTGCAACAAATCTTTCGCGACGAGAGATTGCCTGTCGCATCACATCAAAATACACATCGGCGACagaaactacaaatgcgaaatGTGCGCGAAGTGCTTCACAACGAACCAAAGTATGCTGCAGCACGTGAAAgtgcacaccggcgaaagaaactTTCAATGTGAACTTTGCAACAAACGCTTCACGACGAACCAAAGCATGACGCGACACACGAAAACGCACGATGGGCAAGGTggctacaaatgtgaaatttgcactaAACATTTCAAAACGCAAATCACTCTGTTGAATCACTCGAAGATTCACTCTGGCGACAAACCGTATAATTGCAAAACGTGCAGCGAACGCTTCGCGACGAATACAAATCTGCAGGCTCACCTGAAAATTCACACTGGCGAGAGAATTTATAGATGCAACGTTTGCGCCAAACGCTTCAAATTGAAAGAGAATTTGTCCAAACACGTTCAAAAACACATTGAAGATAACTGCCGGGAAGAACAAATTTCGTACGACGAATCTATAACAGAAGGTAGTAGTgagattgaaaaatatttgatcaaGAATGAATTGTTCATAAAGGAAGAAAAGTTGGAAATCAACAATGGTAAGAATTACATGATTATTCATTCCATTTTGTGTCATTAG
Protein Sequence
MRTHNGERNYKCETCDKCFTRKEQLTNHVKIHTGEKNYRCEICTKRFTEKSNLSAHTKIHNGERNYMCDVCTKCFTGKGDLSKHMKIHTGERNFRCEICDKCFTANGDLLKHTRIHTGEKNYRCEFCNKCFTARSSLSIHLRIHTGERNHKCEICDKCFITRGDLLKHMRIHTGERNYECGVCAKRFTTKSNLSSHMTIHTGERSYKCEICSKCFKTKQNLLSHLNVHTGKKHVLLTFNKSGTEENEEQPSPCNIIVGKIESGLIKKETAVPIKKEKLNIDNDKMEVNINDSKCTIAEVKVERAEFATAIQKPEYFDYEMEHKNVKEEKYVNDSGSETTFDRRVSQSTSKTGIESSKISHQCKICNTSFSSSTDVTDYIKMHGEANHCCICTKSFARKDYLLKHMKIHVGEKNHACEICTKRFVRKDDLKKHATAHTYERNHECDVCAKRFKSSQILTQHVKTHTREKTHKCEICARLFAMRQNLRRHVKSHLAEKNYKCEICTKCFKNKENLSKHVKIHTNERNYKCKVCNKRFRTSPNLLQHVKTHASERNCKCETCGKCFPTQRNLSEHVNVHTGEGKHKCDICGKRFTRKRNMLRHVTTHSGERNYSCEVCAKRFRSKQILVQHKKTHTGEKNYKCEICGKCFRTKGTMLQHVKIHASEMDCKGENMCFKHKTHVGGTNKEESLRTFPYRQLIKKETSLIVKEEKVEFDDGKMDIERKDSHCTITEVKSEPTEFAILVPEPEVYCSYSHVEINKKNIDNSVIKQEEYIDTSAELHTSVIHNDTKIKFEFSEHAHFSDDNKRLSLNPSESGLQTPQIRHVCKICTKLFSTQIELTKHIKKHKNCVGSFKCAIIRGNKLYKCKVCFRFFKTRKSASKHTRLHDEEKVHGGVICARKKYIRTNENNYKCDVCNKRFARTDNLSRHVKTHDSERNYKCEICAKRFKTKQCISNHMKTHTGDRNYECEVCGKRFIQKFQLSSHMKTHTGERNYKCEICGKCLTTKQSLSTHVKIHSGDSNYQCEICTKRFTTKQYLSIHRKIHTSERNYKCEICAKCFTRKYSLSNHLKIHVGGSNYKCRTCNKCFPTNEYLTRHVKIHVVERNYKCEICAKRFKTQNGLSNHMKTHTADRNYRCEICNNCFVRKANLLFHMKIHTGERNYKCEVCGKRFIQKFQLLNHTKIHTSERNYKCEICAKCFVRKVSLSNHMKIHTGDSKYKCKICNKSFTTNQSVLRHMETHTGVRSYICETCNKSFATRDCLSHHIKIHIGDRNYKCEMCAKCFTTNQSMLQHVKVHTGERNFQCELCNKRFTTNQSMTRHTKTHDGQGGYKCEICTKHFKTQITLLNHSKIHSGDKPYNCKTCSERFATNTNLQAHLKIHTGERIYRCNVCAKRFKLKENLSKHVQKHIEDNCREEQISYDESITEGSSEIEKYLIKNELFIKEEKLEINNGKNYMIIHSILCH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-