Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755093.1:14079580-14088701[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.68 63 4.9 0.0 3 23 300 321 298 321 0.87

2 15 0.0023 0.21 12.7 0.1 1 23 379 402 379 402 0.97

3 15 6.5 6e+02 1.8 4.2 1 22 408 429 408 433 0.90

4 15 3.3 3e+02 2.7 0.8 1 23 440 462 440 462 0.90

5 15 0.00056 0.052 14.6 4.6 1 23 526 549 526 549 0.96

6 15 0.0058 0.53 11.4 3.4 2 23 556 578 555 578 0.95

7 15 0.0015 0.14 13.3 2.3 1 21 677 697 677 698 0.95

8 15 0.00048 0.044 14.8 2.8 2 23 710 732 709 732 0.92

9 15 2.3 2.1e+02 3.2 1.6 3 23 765 785 763 785 0.95

10 15 0.36 33 5.7 0.1 1 23 789 812 789 812 0.96

11 15 0.51 46 5.3 0.4 2 23 819 841 818 841 0.94

12 15 0.025 2.2 9.4 0.6 2 23 850 872 849 872 0.95

13 15 5.9 5.4e+02 1.9 2.3 2 23 1008 1030 1007 1030 0.94

14 15 1 95 4.3 0.2 2 23 1037 1059 1036 1059 0.90

15 15 0.46 42 5.4 0.9 1 23 1072 1094 1072 1094 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.68	63	4.9	0.0	3	23	300	321	298	321	0.87
2	15	0.0023	0.21	12.7	0.1	1	23	379	402	379	402	0.97
3	15	6.5	6e+02	1.8	4.2	1	22	408	429	408	433	0.90
4	15	3.3	3e+02	2.7	0.8	1	23	440	462	440	462	0.90
5	15	0.00056	0.052	14.6	4.6	1	23	526	549	526	549	0.96
6	15	0.0058	0.53	11.4	3.4	2	23	556	578	555	578	0.95
7	15	0.0015	0.14	13.3	2.3	1	21	677	697	677	698	0.95
8	15	0.00048	0.044	14.8	2.8	2	23	710	732	709	732	0.92
9	15	2.3	2.1e+02	3.2	1.6	3	23	765	785	763	785	0.95
10	15	0.36	33	5.7	0.1	1	23	789	812	789	812	0.96
11	15	0.51	46	5.3	0.4	2	23	819	841	818	841	0.94
12	15	0.025	2.2	9.4	0.6	2	23	850	872	849	872	0.95
13	15	5.9	5.4e+02	1.9	2.3	2	23	1008	1030	1007	1030	0.94
14	15	1	95	4.3	0.2	2	23	1037	1059	1036	1059	0.90
15	15	0.46	42	5.4	0.9	1	23	1072	1094	1072	1094	0.95

Sequence Information

Coding Sequence: atggaaacaaaGTTGTGTAGAATTTGTGGAAAGTTGGGTCAaaactttgttcatattttcaaaactgaaggACTCAGGAGCAAGATTGAGACATGTTTGCCAATAATTgTCTCTCCTTATTGTCTCCTGCCGGATGCCATATGTGGAGAATGCACAACGACTGTAGACAACTTCTATGCCTTCATAAAAAACTGCTTGGAGAACATCATAATACTGGAGGCTCAGTATGATGTACAGGAATCTTGTTTGAAGTCCAAGCAGAAGAAAGACAAAGGTTGCATTGCCGATTTCAGTCACAAGAAGATAAACAAAGGGGTTCAGACCGACGACTTTTTGGACGTTTTGTCCGGAAGAAATACCAATTTGAAAGAGTTCTCCTCCAATTTTCCTCAAACCCTGTCATTTCTGAAGAGCGAGATTGCCTCACCGAAAAAATACTCGAATCTAGTTGAATATGATGTTGACACGGACTCTAGTTTGGATGATAACATCAGTAGTGGCAAAGTGGTATTGAGCAATGAGTTGCAAGCCTTCAATAAAATCACCAAATTTGTCGATTCCATAACTAGTGAAGATCTGTGGCCGAACAAAGTACGACGTTGCGATGAATTGGAGAATGATTTGATAAGCGAAATTGTGGAGAGGAGGAATTTGAagaggaaaaatgattttataGAGGTTTGCAAaccgaaaatattcaaaccTGAAACTTTTAACAAACGAAAAAATAAAGTACCAAAGAAAATAGATACCCTAGATGTGAGTGATGCAGCAGTTAGTTTTCAAAAACCAGAAAACGTTGAACAGCTACAGAGCAATGGATATTGTGATATTAATATCCAGACTGCTATACCAACTCAGCAAGAAAATTTGTCAGCCACAATGTTGCCCCAAATTTGTCTGCTCTGTGACACCAAGTTTGCAAGTCCAGCTGCAGTGGCGTCACATGTATTCGAGGCCCACAGCGTCGATATGGTCTCGGAGGCAGTTTCTTTGGGTTCAGGAGAATCGTCACCagaaaaaaataagaagaagatTCCGAACCTCGTCAAAATTTCGGATCTGAAGAGGAGTGACTCGAATGAAGACCCTCAAGAAAGACTCAACGAAGATCCTCCGACACTGCAGGCCAGCTTTGTCTGCCCCAACTGCCCTGGAATCTTCACCATCAAGCAGGACTTGATGGCCCATCTTCGCCTGAAACACCCCGAACTGGCCGCCTTCCTCTGCGGCATCTGCATGCATCAGTGCACTTCATCTGTCAATCTGTCCAGCCATATGCAAGTCTGCTCGCAACaccatcaaatcaccaccagaTACTACTGTCACATCTGCCGGTACGGCGACGATAACTTCAAATGGCTGGAAAACCACGTTCTGGTCCACGATTTCCTGTTCGACGCTTGTCGCAAGCAGCTGAAGATATTCGATCCGGAAGATTACATCGACGTCAACGACAATCCGGAGAACGGGGCAGCCCCAGCCAACAAGGGTCTCAGTTGCGCCGAATGCGGCCTCAGCGAGTTCGACTCCTTCAAGGAGTTCAGCTCGCACAGGAGAAATCAGCACTCCATATTCCACTGCGACTTGTGCAACAAATTCTACGGCCGCAACTCTCACCTATGGAAGCACGTCAACAGACTCCACAAGAACCATCCGAGCATAACGTGTCAAATTTGCTACAAAACGTCCGCTTCGAAATACCACCTCACGCAGCATTTCAACAAAACCCACACGAACAAAGGCCCGAACAGCGATAAGGAGGACTTTCTCTCTCAAAAGTTCTCCGCGTTCGATTTCCAATCCGTCAAACAGAGTTTCATGAAGCAAGATCTGATCGCGACCGAACAACGGAAAGACGATACCAGCGAGCCAGAGGGTGATTCCAACGACCAGCAGTGGGACCAAGAGGAGGAGGAGCTGATCATGATCGAAGAACCGGCGTCGGCTCCGAAGGAGATCGATTCCTCCCACAACCTCTACACGAACATCATCACCAACTACACGCCGCCGCTGAACGAGGGCGAATACAAATGCCCCAAGTGCTCCAAAGCGTTCCAGAAGAAGTTGCTGCTCAAGAAGCACAAGAAGAACTGCAGGCCTAGGAACCAGAAAGATCTCCTCACCCGATGCAAGACCTGCTCGAGAACGTTCAAGGACCGACAGAGTCTGACCAAGCACTTGGTCAACTATCATTCCGAGTACGTTTGCGAGATTTGCAACGGCAAGATGCAGAGCAAGTGCGAGATCGTGTCGCACATCAGATTCCGACACCCCGGCTGCTACTTGTTCTGCAAGGTGTGCCGGAATATACTGCGAAGCAAGGCCGATATGCAGGAGCATCTGCACAACCACCTCGAGTCGTACATCTGCCAGTTCTGCGGCGATCCGTTGCCGAGCAAGATCAAGCTGAAAATGCACATACTCAGTCTGCATCGCAAGATGTTGAGTCTGTCGTGCGGCATTTGCTTGAAGCTGTTCGAGACGCAGCACATCCTGCGCGACCACGTCAGACTGGTGCACAAGAACCAGCTGGCACCGCTCACTTCTTGCCCGGTCTGCGGCAAGAACTACGGCTCCAAGTGGAAGACCTTCGACCATCTCAATAAGTCGCACGGGAGGATTTTCAAGGCGTGCAAGACCTGCTTGGGTGTGTTCGAGACCGACGCGCAACTGCAAGCGCACTGCGACGCCACCTCTCACGGAGGGCCGGTAGTCGCCGCCACTGCTAACGCGACCAAAGCTACGTCGCAGACGTCTTCTGCGACGACGGATATGGCCGCCAAGAACGATGACAGCGAGAGCGAGGAGGACGAGCAGTCGGCGAGCGATTGCGACGTGGAACAGGACATGCCGTACTTGCCGCAGGACGCCAAATTGATGTTGCTGGAGAAACGGATACTGGGAGAAAAAGTCCACGACGAGAAACTCGCGAAGAAGTCGACCTCGAAGAGAGAAGACGACGCGGACCGGAGCAATTCCAGCAAGCGAACCGTGTACGTCAACAGCAACGACCCGTCTTACTGCGAGATTTGTTTGAAGACCTGGCCCGCCAAGAAACACTTGTGGCAGCACTACATCCGCTGCCACAAGTCCGTAGCCGCCACGGTTTGCGGCATCTGTCTGAAAACCAACGACGGCTACGACAGTTTGCAGCGGCACTTGCGCGACACGCACCCGACGCTGCTGCACGGCCAGGGCTACGGATCGAACTTCATTTGCAGGATCTGCGGCAGATACCACAACGCCAGCTCCAAGTTGAGATTGCACATGGTCATACACGAGAACTTCGATTGGAGCGCGTTGGACGATCAGAGCAAACCGATCAGGATGGAAGAGGGAAACAGCCCCACGTCGAACGGGTTCGAGGACGTCAAGGAGGAGCCGCAAGTCGACATAAACTACGATAGTTTGATCGAGCAGGTGGAGTGTTCGTCGGAATCGGACGATTCCGAGGTGGAGCTGCGAGCTGCCGGCATGGAGCAGGAGGATTCTTCTTCGGAGGAGGAGAGCGACGGGTCCGCCATGTCGGAAGAGCGAGAGAAACCGGCCACGGCCGAGCCCCAGGAGTATATCATCTCCAGCGACGATTCCAGCTCCAGTTTTAGCTCTTCCGACGAGGGGGGGCCGTCGCGGAGGTCGCGATCCTTTTCGCCCCAGAGCAAAGGAGACTCGATGGGCTCGAACAGCAATTTGTTTTGCCGGAAGCCGGAGGAGTTGGATTCTGCTGTGCAGTCCATCAGCTACGAGTGCTTGGAGCAAGAGGATGTCCGTGTCGAGGACGATTATGGCGATTTGCAGAATCCTTGTCTCAACGATAACGAGATCGAGTCGGCTGTCGGTAGTATCCTTTAG
Protein Sequence: METKLCRICGKLGQNFVHIFKTEGLRSKIETCLPIIVSPYCLLPDAICGECTTTVDNFYAFIKNCLENIIILEAQYDVQESCLKSKQKKDKGCIADFSHKKINKGVQTDDFLDVLSGRNTNLKEFSSNFPQTLSFLKSEIASPKKYSNLVEYDVDTDSSLDDNISSGKVVLSNELQAFNKITKFVDSITSEDLWPNKVRRCDELENDLISEIVERRNLKRKNDFIEVCKPKIFKPETFNKRKNKVPKKIDTLDVSDAAVSFQKPENVEQLQSNGYCDINIQTAIPTQQENLSATMLPQICLLCDTKFASPAAVASHVFEAHSVDMVSEAVSLGSGESSPEKNKKKIPNLVKISDLKRSDSNEDPQERLNEDPPTLQASFVCPNCPGIFTIKQDLMAHLRLKHPELAAFLCGICMHQCTSSVNLSSHMQVCSQHHQITTRYYCHICRYGDDNFKWLENHVLVHDFLFDACRKQLKIFDPEDYIDVNDNPENGAAPANKGLSCAECGLSEFDSFKEFSSHRRNQHSIFHCDLCNKFYGRNSHLWKHVNRLHKNHPSITCQICYKTSASKYHLTQHFNKTHTNKGPNSDKEDFLSQKFSAFDFQSVKQSFMKQDLIATEQRKDDTSEPEGDSNDQQWDQEEEELIMIEEPASAPKEIDSSHNLYTNIITNYTPPLNEGEYKCPKCSKAFQKKLLLKKHKKNCRPRNQKDLLTRCKTCSRTFKDRQSLTKHLVNYHSEYVCEICNGKMQSKCEIVSHIRFRHPGCYLFCKVCRNILRSKADMQEHLHNHLESYICQFCGDPLPSKIKLKMHILSLHRKMLSLSCGICLKLFETQHILRDHVRLVHKNQLAPLTSCPVCGKNYGSKWKTFDHLNKSHGRIFKACKTCLGVFETDAQLQAHCDATSHGGPVVAATANATKATSQTSSATTDMAAKNDDSESEEDEQSASDCDVEQDMPYLPQDAKLMLLEKRILGEKVHDEKLAKKSTSKREDDADRSNSSKRTVYVNSNDPSYCEICLKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNDGYDSLQRHLRDTHPTLLHGQGYGSNFICRICGRYHNASSKLRLHMVIHENFDWSALDDQSKPIRMEEGNSPTSNGFEDVKEEPQVDINYDSLIEQVECSSESDDSEVELRAAGMEQEDSSSEEESDGSAMSEEREKPATAEPQEYIISSDDSSSSFSSSDEGGPSRRSRSFSPQSKGDSMGSNSNLFCRKPEELDSAVQSISYECLEQEDVRVEDDYGDLQNPCLNDNEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -