Gpol014984.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- Arhgap20
- Assembly
- GCA_963576655.1
- Location
- OY755088.1:1205320-1239040[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.092 8.4 7.6 1.8 1 23 77 99 77 99 0.94 2 13 0.29 27 6.0 0.9 2 17 106 121 106 132 0.88 3 13 0.036 3.3 8.9 6.9 2 23 146 167 145 167 0.96 4 13 0.00076 0.069 14.2 0.6 1 23 173 195 173 195 0.98 5 13 9.9e-07 9.1e-05 23.2 1.3 1 23 201 224 201 224 0.97 6 13 0.0056 0.51 11.4 0.5 1 23 230 253 230 253 0.96 7 13 0.013 1.2 10.3 0.6 1 23 399 421 399 421 0.97 8 13 0.00038 0.035 15.1 8.2 2 23 466 487 465 487 0.96 9 13 0.21 20 6.5 0.3 1 19 493 511 493 515 0.87 10 13 9.9e-06 0.00091 20.1 2.4 1 23 521 544 521 544 0.97 11 13 0.012 1.1 10.4 0.5 1 23 550 573 550 573 0.96 12 13 0.016 1.5 10.0 2.4 1 23 644 666 644 666 0.98 13 13 1.2 1.1e+02 4.1 3.0 2 23 672 693 671 693 0.90
Sequence Information
- Coding Sequence
- ATGATGGAGAAGAAAGTCcgagtgaaaaatgaaaaactgcCTAGTTCGATCAAATCAGAAATCGAACAGGAATCAGTGGATGTTCCAGATTTCGTGGACGAAAACCATCCTTGTTTGATCAAAGTGGAAATCAAACAGGAATCAGTGGACGTTCCAGATTTTGTCGACACAAGCGATTACTCGGATGGCCAAAACGAGAAGAAATTACTAAAACAACGAGACTATCATCATCAGTGCATTACCTGCAACAACAGATATAGGAAACAGTCGTACCTCGAAATCCATCAAGCCGTTCATGACCCTCAGGCTCAGGGGGTTTGTCCGATCTGTCCCACAACGTTCACAGGCAAAACAGCGTTCAATAAACGAAAATTCATAATCCACATCAACCAACACATCAGGACCAAGATGAAGGAAGACAAGGAGAAAGAGTGCATCTGCAGCTATTGCCAAAAGAAGTTTGACACGAGACGTAGGCTTCACCTTCACACCAGAGTACATACTGGTGAACGACCTTACGAGTGTGATTTGTGTGGTGAACATTTCAAACTACTCGGTGCTCTGAGAAACCATAAGGTAACTCATACTGGACTGAGAgattatatttgtgaaatatgCAATGGTACTTTCACGACTAGTTCTAGTTTGAACAGACATATGAAAAGGAAGCATCAGGAGAAACAAAATTTCGACTGTAAACAATGTGACAACAAATACTCAACTGTAGGACTGCTGAAAGCTCATGAAAAACGAGTTCATACCGTGAAAAATGTAGTGAAAATCAAGAAGGAAAGTCAAAAACACTTTGACAAACACAAAAGGTTAAATAGTAATAAACAAACAACATATGAGTGTCTCTTATGTGGTGATTTATTATCAAGCTTATTTCTTTATACTGAACATAAAAGAGAGCACATGCAGTACACGAGGGAAGAATATGAAGACAAAAAATCTAAGCAATACGGTTTTAAATTAGAAATCAAACAGGAACCAGTGGATCTATCAGAATTCGCGAACGAAAATCAACCTTGTTGGATCAAACAAGAGGACGTTCCAGAATTCTCCCATGAAAATGATACTCACTCAATCAAATCAGAAATCAAACAAGAATCAGTGGATCTGCCAGATTTCGTCGACACAGAGGATTACTCCGAAAACCCAACAGAAGAGAAACCAAAGAAACAATACGGTTTCCATCAATGCCCTACCTGCGGCACCAGGTATTGGAAACAGTCCTACCTAGACATCCACCAAGCCATTCACGACCCTCGTGGAGTATGTCCAGTTTGCTCCAAACCTATCACAGGCGATTTACCCTACGACAAAAGACTCTACAGACAGCACATCAACCAACACATCAGAACCAAAATGAAAGAAGACAAGGAGAAAGAGTGCACATGCCACTATTGCCAAAAAAAGTTCTCTACAAGACGGAAGCTCAAGCTGCATGTTAGAGTGCACACAGGAGAGAGGCCTTATAGATGCAATATATGTAGGGAACAATTCAAATTGCTTGGTGCTATGAGAGACCACGATTTGACTCATGCTGGAACGAAAGAGTTTGTTTGTGAAAAATGTAATGGCAGATTCACGACCAGTTCTAGTTTGAGTCGACATATGAAAAGGAAACATCGGGTGAAGCAATATTTCGATTGTAAACAATGCGACAGCAAATTATCTAATGTGGGACTGCTGAAAGCTCATCAAAAGAAAGTGCATGctgttaataatatagttaatttcaagaagaaatgcCAGAACATTGAGTTCTCAGGCAAGAACCAGGAACAGCAAAAGTCACTGAACAAACAATCATACGAGTGTATCCTATGCGGTGATTTATTGTCAAATATAGTTCTTTATTCGGAGCATAGACGACTACACTTGAAATACACCAAGGAAGAATACGAAGACAAAAAATCTGAGCAATATCCTTGTAAATTCTGTTTGAAATCTTTCACAGCACTTCAGAATGTTTTCAGACATTTGCATGTGCACATGGAGAAAACTGATAAATGTCAGCTGTGTAACGATTATTACACAAAATATGGTCTCAAAAGGCACATGATCCGTTGTCATAAAAATTTACAATGCAAAGTGTGTCTCAAGTTTGTATTGGGGAAGCATAAGTTGTACAGACACTATCAAAAGCATCACTCCAAGAATGACAGACAGCGACTACTGGGTGGATCCCAAAACATAATAGATGCCAGGCGAAGAGACTTGGATAGGATTCAGGATCTTTTTCCGCACGATTACTTGGGCCTCCATTTACCGGAACCGCAGACAGTCTGCAATGGGAAATCGAAATCATTCCGGAAAAAGTCCTTGGGAGACCTGACCCAAATGGAAACGGCTATGAATCAAGGGCCTTGCACGAGGGTGTTCTTGATGGAAGCACCCTGTACTATAGCACCCTACCAGGTTTCTGTCAACGATAAACCCAGGCACTTGTTCCTCTTCAATGACTTGCTGGTGGTAGCGAAGCCGAAATCTCCAGGAATCTTCAAACTAAAGGAAAGCATACGGGTGTCGGAGCTTTGGTTGGCGCCCTGTCCCGAATCAGAGACCGGTTTCCTGATCGGTTGGCCGACACCGGCGAAAACGTTTCTTGTCACTTTTTGCACTCAAGCCGCTCGAGACACCTGGTGGTTGGAATTCCGAAGAGTTCTCTCAGCGCAGCTCCAGCTAGAACCTCCGACGACCAACATCAGGGTGATATACAGAGATCCTCTGAGCGGTACTGAGTGTTCCAAGACCTTGGGCGTGGGTCCTGAGACGAGCTCAGGAGACCTGGCTCGGTTGGCCTTGGACGAGACCAGGGTTGGAGACTGGGCGTACAGGCTCTACACCAGGGACAGGGAGGGGGCACCCTTAGAGCTGATTGGCTGCGAGCGACCCCACTCCATCCAGTTGGCGAGGTTACGTAGGTCGCTTTGTGCCGAAGAAGGCTTTGATTTGCAGCACTGCAACAGTCGCAATATACCGAGCGATATAGTGTTCGAACTGAGGCCCAACATGAAAATCAGCCAGAAAAAATCACCAATAAAGTTCTTCCGGAAATCGAACTCGAGGTTCTTCGGCGTACCGCTGTCAAGATTGATCACCAATAACACCTTACCTCCAGTACTCGTTGCCATACTCAGGGTTCTCTTCCACAGAGCTCCGTACACTCAAGGAATTTTCAGACGATGTGCTTCAGCGAGGGCGTTAAGggaactgaaagaaaaaatcgacTGCCAAGGTGCTGCTGCATGTGAAGAAATCTCGAACTCCCCAGCTCTGTTGCTAGCAGGACTGCTCAAGGATTTTTTGAGGAGTTTACCCGATCCGCTGTTGACGGGTAACGTGCAGGATTGGCTGAACGGAGTCAACACCGGCAGGACGGACAACTTGAAGAAGCTCATCATGCAGTTGCCGATGGAAAACCACTTGTTGCTCGCGCACGTGATGTGCGTGTTACACAATATCGCCAAAAAGTCGAGGTTCAATCTCATGTCGGCTGCTAACTTAGGTATTTGCGTCGGTCCGAGCTTGTTGTGGGATGCTTCTCAGAATGCTCCTCTCAGAACTTTGCCGATTCTCGTGGAAACTTTGATCAAGAACTGCGAGGCCCTTTTCGGATCGCAGGTGGTGTCTTTGATGGGAGAAGGTTGCAATGATAGCGGGGCGGAGGAATCTGAAAGCATACATTCTCTGGGTCTATCGCTAGACTCGGTAGAACTGAGCAAGGACCAGAAGTCCCTGAGCCGCGATTCGGGCCTCACGTTGTCCGAGGACGACGGAGAGAGCCCCGGCCCGCACTACCCCTTCCACCGCTCCGATTGGTCGAGACAGGCGGCGCGCGCGCGTCTCTATTGGCCCGAGGAGGACGACGACGACGTCTTCTGCGCGTCGGACGAGAGTCGCCGGTCGCCGCCCGTGCCGCCTCGCAGGGCGCGCGCCCCCGCCCACCTGCCGCCCAGGTACCGCCCGCCGCCGCCCGCCTACGCCCAGGCCAGACTGATGATCGTGTGCGACGACGAGAACGAGAGTTACGTTTGA
- Protein Sequence
- MMEKKVRVKNEKLPSSIKSEIEQESVDVPDFVDENHPCLIKVEIKQESVDVPDFVDTSDYSDGQNEKKLLKQRDYHHQCITCNNRYRKQSYLEIHQAVHDPQAQGVCPICPTTFTGKTAFNKRKFIIHINQHIRTKMKEDKEKECICSYCQKKFDTRRRLHLHTRVHTGERPYECDLCGEHFKLLGALRNHKVTHTGLRDYICEICNGTFTTSSSLNRHMKRKHQEKQNFDCKQCDNKYSTVGLLKAHEKRVHTVKNVVKIKKESQKHFDKHKRLNSNKQTTYECLLCGDLLSSLFLYTEHKREHMQYTREEYEDKKSKQYGFKLEIKQEPVDLSEFANENQPCWIKQEDVPEFSHENDTHSIKSEIKQESVDLPDFVDTEDYSENPTEEKPKKQYGFHQCPTCGTRYWKQSYLDIHQAIHDPRGVCPVCSKPITGDLPYDKRLYRQHINQHIRTKMKEDKEKECTCHYCQKKFSTRRKLKLHVRVHTGERPYRCNICREQFKLLGAMRDHDLTHAGTKEFVCEKCNGRFTTSSSLSRHMKRKHRVKQYFDCKQCDSKLSNVGLLKAHQKKVHAVNNIVNFKKKCQNIEFSGKNQEQQKSLNKQSYECILCGDLLSNIVLYSEHRRLHLKYTKEEYEDKKSEQYPCKFCLKSFTALQNVFRHLHVHMEKTDKCQLCNDYYTKYGLKRHMIRCHKNLQCKVCLKFVLGKHKLYRHYQKHHSKNDRQRLLGGSQNIIDARRRDLDRIQDLFPHDYLGLHLPEPQTVCNGKSKSFRKKSLGDLTQMETAMNQGPCTRVFLMEAPCTIAPYQVSVNDKPRHLFLFNDLLVVAKPKSPGIFKLKESIRVSELWLAPCPESETGFLIGWPTPAKTFLVTFCTQAARDTWWLEFRRVLSAQLQLEPPTTNIRVIYRDPLSGTECSKTLGVGPETSSGDLARLALDETRVGDWAYRLYTRDREGAPLELIGCERPHSIQLARLRRSLCAEEGFDLQHCNSRNIPSDIVFELRPNMKISQKKSPIKFFRKSNSRFFGVPLSRLITNNTLPPVLVAILRVLFHRAPYTQGIFRRCASARALRELKEKIDCQGAAACEEISNSPALLLAGLLKDFLRSLPDPLLTGNVQDWLNGVNTGRTDNLKKLIMQLPMENHLLLAHVMCVLHNIAKKSRFNLMSAANLGICVGPSLLWDASQNAPLRTLPILVETLIKNCEALFGSQVVSLMGEGCNDSGAEESESIHSLGLSLDSVELSKDQKSLSRDSGLTLSEDDGESPGPHYPFHRSDWSRQAARARLYWPEEDDDDVFCASDESRRSPPVPPRRARAPAHLPPRYRPPPPAYAQARLMIVCDDENESYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -