Gpol012313.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- prdm10
- Assembly
- GCA_963576655.1
- Location
- OY755086.1:14940455-14957276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00013 0.012 16.6 0.1 2 23 440 461 439 461 0.96 2 12 0.0046 0.42 11.7 0.2 1 23 533 555 533 555 0.94 3 12 0.00064 0.058 14.4 1.0 1 23 566 588 566 588 0.96 4 12 6.3e-05 0.0058 17.6 0.3 2 23 601 622 600 622 0.97 5 12 0.1 9.6 7.4 5.2 2 23 631 652 630 652 0.97 6 12 0.82 75 4.6 0.2 1 20 659 678 659 681 0.88 7 12 0.00023 0.021 15.8 3.4 1 23 687 710 687 710 0.96 8 12 0.00029 0.026 15.5 2.2 1 23 715 737 715 737 0.97 9 12 0.00091 0.083 13.9 3.6 1 23 743 766 743 766 0.89 10 12 0.014 1.3 10.2 1.1 1 23 800 823 800 823 0.97 11 12 0.00019 0.018 16.0 2.3 1 23 845 868 845 868 0.97 12 12 0.0013 0.12 13.4 3.8 2 23 907 929 906 929 0.96
Sequence Information
- Coding Sequence
- atgaatactaTTACTGAGGGTCGCCAGAATGAAAGGGGTGATATGCAAGACATCAGTGTTGTTGATGCTTCAAATTGGGGCACACATGCTGAAGagaatactaataataataccACACTTCTGTACATTGCTGTCGAATATGTGGAAGATGCAAGTTCTAACATCACTACTCAATCTGAAGTATATCCAGATTTTGATCCTCATGTTAGTCCATTAGACCCTAATATGAGTTCTGTTGCCAGATACAGTCCTGTTTATAATGAACCTACTAATGAATACAGCCCTGTTGTCATTCATCAGCTGATATCCCAAGACAGTACTGTTCAGCATGATCAATTTGTTAGTAATTTAGGAACTTCTTCACTTGGCAATATATCCACTGTCCTGTGCAATAGGGAGGTTAATAATGAATTTCTGCAGATGGTGAATGACAATGCCAATATCCTTACACCTACAAATGATGATAATCTTCAGATAGCTCCTGAAAGAGAGCAGCAAGTAGAACTGCTGATCACTGATGAAGCTACAGgaATATCATACAGTGTAAATGCCCAAGAACTTCTTGTTGAAAGTTGTCTTCAAGAGGACCAACAGCTTTTAGAAGCTTTAGCACCCAATCCCATTCTTGAATCTGATTTGCTTACATTAGATGAAAAGACTTTGAAAACAGAGTTAAATGATGATATAGACATCCCCTCAAATGTTTCAGCCTCTAATGAACATGTTGtagataattatatcaatagtTTATCTGAAAATTGCCTTACAAAAACACTTGAAACTGATAGTAGCTTTAAGATGGAAACTAGACAAGCTAGAAGAAATGGGCTAGATGTTGATGAACAATCATTATCTTGTGTCTATAGTATTACAGACAAACCTATTCTGTCAAGAGCTAAAGCTACTCTTCCGGAAGCTCATCTATTCATCAGTAAAATTGATGAAGAATATGCCATATTTGCCAAGAGAAGTATTCCAAAAAGAGCACAATTTGGACCTCTGGAAGGTGTATTATCTGTGAATGTTGATACAGATTCtttaaaaaacaatgaaatgttgCATTTTTTGATTGAAAGTGAAGGGGTTTTGTACAAAATTGATGTCTCTGATGAAAACTCTTCAAATTGGATGGGATTTGTCAGAAGAGCTAAAACTTTTGAGGAACAAAATGTTGTTATTACTCAAGAGAAGAATGGCATATTTTTCACCACCACAACAAATATTCTTCCTAAACAGGAACTAAAGGTGGGATACAGCATACTTTATGCCCAATATTATAATCTTTCTGCACTTCAACCACATGAAGAACTAACTTGGCCTTGCTATGAATGCCCTTTCAAGTTTGAATCCTCTGAAGATTTACAGAAACATCTCAACATTCATGATGATGACAGAGATGAAAATGTCAAACcaagaaaaaaactgataaaaacaaaaaaaagactGTTTAAGAAATATCAGAGTGATGCTGTTGAGTGCAACATTTGTGAGGAAGTATTCCTTCAATACAACTACTGCTACCTGAAATTGCATCTTGTACAGAAACATGGATTCATGAAAGGAAATGTCGAAGAAAATTTTACTGTGATTATGCATTACAAGTGTGATTATTGCAATGCCATCTTCAAATCTGAGGCTGTGCTTAAAATACACAACCTGGAGCATGATCCAGACTCATCAGATGTGCAGCGCAATCATGTCTGTCCTTCTTGTCAAAGAAAATTCCCCACACAAAGACAACTTGTATTGCATGTTATGCAACATGTCATCACCAAAAAAGTGACTCTTCCTGAAAAAGTTAAATGCCCTATATGTTCCAAATTGTTCTCAGAAAGAGAAAGACTACAGAGGCATATGTTGGTTCACGGCTCTGATGAAGCCAAACCTTTACAATGCAAAACGTGCCACAAAAGATTTCTCAACAATTCAGCTTTGGCTTGTCACATCAAAACACActacaatggaaaaaaatgtttcgaatgtCCAATATGCAATGACAGATTTGATAATGTTATCAAATTCAAACTGCATGTTCCCAGCCACAGTCAGAATAACATTTTCACTTGTCCTCACTGCAAGAAAGCGTTCAAGAAGTACAGTGTCATCAGAAAGCATATTAGAGCTTTTCATTGTGAAAGAACTCACGAATGCCAATATTGCACTAAAATGTTTCCTACGATTGACAAACTTCGTATGCATTTGTTGAGGCACTCTGATCACAGGGAATTTTTGTGTGCTGACTGTGGAAAGCAGTTCAAGAGAAAAGACAAGTTGAAAGAGCATTGTAAGAGGATCCATACTGAGGAAAGAGAGAATACTATCCCAAAAACATCTAtgcagaagaaaataaaaaagtttaGACCGAAAGTGGAACCCACTGATTTTCACAGGTTCATTTATAAATGCCATGCTTGTTTAGTTGGATTTAAAAGAAGAGGGATGTTGGTCAACCATTTAGCCAAACGCCACCCTGAAATTCCTCCAGATTCTGTCCCCGAACTCAACCTGCCGATTCTTCAAACCACCAGAGATTACTATTGTCAATATTGTGACAAAATCTACAAGAGTAGCTCGAAACGGAAAGCTCACATATTGAAGAACCACCCTGGTGCTGCCTTACCTATGAGCAATCGGAAACGAGGCTCCCTCCAAGACGTGTCAGGACTTCCTAATCCCACTTTTTCGCAGACCGTGGGAAGCATCACGACGAGTCCGCAGAGTTGCAAATGGTGTCACAAACAGTACGCCAGCAAGGCTAAGCTGCTGCAACATCAGAGGAAGAAACATACTGATCAGGCGCCAAATGACATGAGTTTGGATCCTGACCTTCACAATGATATGGATGATGGAAAAGTTGGAATGAAAGTCGATGATGTGTCGGAATTTGACAAagttgtagaaaaaataatgaataacgaGTTAGACGATTACAATTTAGAGGAAGATTCGCAGTACTGTCATCTTTCGATTAATGAGAACGAGAATTTCATAGAGACTACTGAGTTGGAGAATCCCAATTCACATTTATATCGATTGTTGACCACAAATAATGgGATGATGCCTCCACGTTGA
- Protein Sequence
- MNTITEGRQNERGDMQDISVVDASNWGTHAEENTNNNTTLLYIAVEYVEDASSNITTQSEVYPDFDPHVSPLDPNMSSVARYSPVYNEPTNEYSPVVIHQLISQDSTVQHDQFVSNLGTSSLGNISTVLCNREVNNEFLQMVNDNANILTPTNDDNLQIAPEREQQVELLITDEATGISYSVNAQELLVESCLQEDQQLLEALAPNPILESDLLTLDEKTLKTELNDDIDIPSNVSASNEHVVDNYINSLSENCLTKTLETDSSFKMETRQARRNGLDVDEQSLSCVYSITDKPILSRAKATLPEAHLFISKIDEEYAIFAKRSIPKRAQFGPLEGVLSVNVDTDSLKNNEMLHFLIESEGVLYKIDVSDENSSNWMGFVRRAKTFEEQNVVITQEKNGIFFTTTTNILPKQELKVGYSILYAQYYNLSALQPHEELTWPCYECPFKFESSEDLQKHLNIHDDDRDENVKPRKKLIKTKKRLFKKYQSDAVECNICEEVFLQYNYCYLKLHLVQKHGFMKGNVEENFTVIMHYKCDYCNAIFKSEAVLKIHNLEHDPDSSDVQRNHVCPSCQRKFPTQRQLVLHVMQHVITKKVTLPEKVKCPICSKLFSERERLQRHMLVHGSDEAKPLQCKTCHKRFLNNSALACHIKTHYNGKKCFECPICNDRFDNVIKFKLHVPSHSQNNIFTCPHCKKAFKKYSVIRKHIRAFHCERTHECQYCTKMFPTIDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRIHTEERENTIPKTSMQKKIKKFRPKVEPTDFHRFIYKCHACLVGFKRRGMLVNHLAKRHPEIPPDSVPELNLPILQTTRDYYCQYCDKIYKSSSKRKAHILKNHPGAALPMSNRKRGSLQDVSGLPNPTFSQTVGSITTSPQSCKWCHKQYASKAKLLQHQRKKHTDQAPNDMSLDPDLHNDMDDGKVGMKVDDVSEFDKVVEKIMNNELDDYNLEEDSQYCHLSINENENFIETTELENPNSHLYRLLTTNNGMMPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330997;
- 90% Identity
- -
- 80% Identity
- -