Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: Clamp
Assembly: GCA_963576655.1
Location: OY755093.1:5169421-5196480[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00014 0.013 16.5 3.8 1 23 99 121 99 122 0.96

2 7 0.00012 0.011 16.7 3.0 1 23 279 301 279 301 0.97

3 7 7.2e-06 0.00066 20.5 0.2 1 23 307 329 307 329 0.98

4 7 2.1e-06 0.00019 22.2 1.5 1 23 335 357 335 357 0.99

5 7 2.3e-07 2.1e-05 25.2 1.2 1 23 363 385 363 385 0.98

6 7 0.00014 0.013 16.5 3.3 2 23 626 647 625 647 0.97

7 7 1.7e-05 0.0016 19.4 0.6 1 23 653 675 653 675 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00014	0.013	16.5	3.8	1	23	99	121	99	122	0.96
2	7	0.00012	0.011	16.7	3.0	1	23	279	301	279	301	0.97
3	7	7.2e-06	0.00066	20.5	0.2	1	23	307	329	307	329	0.98
4	7	2.1e-06	0.00019	22.2	1.5	1	23	335	357	335	357	0.99
5	7	2.3e-07	2.1e-05	25.2	1.2	1	23	363	385	363	385	0.98
6	7	0.00014	0.013	16.5	3.3	2	23	626	647	625	647	0.97
7	7	1.7e-05	0.0016	19.4	0.6	1	23	653	675	653	675	0.98

Sequence Information

Coding Sequence: ATGTTCGATCCAAACACCATAACCAGTCAGCAATCGCAAATCCAGTACCAGCAGCAGCCTCAGCAGACCGACAAAGACAAAGGGCAGGAGCAGAAGGACACGTTCGCGCCCTTCTGCTACGCCAACGTCAACATGATCCACAAGATCTCGCCGAACGCCGGTCAGGCGCAAACCTCTACCGTCAACATGTCGCAGCTGACCGACGACAAATGCTACATCACGCAGCCGTTCAGCTACAACTACACGTTGGTCAACCAGAATCTGCTCACGCAGAACGCCATCTCGAATATCACGTTCAAGTGCGACGTGTGCGGCTTGATGTTCGCGCATTTGGCGTTGCTGAACCACCACAAGAAGGTGCATCACGGGCAGGCCGATCAGGGGCAGGGGCAGCAACAGCAGATCACGGTCCAGGTTCAAACTCAAGCACAACAACAACCGCAGCAACAGCAACAACAGCAGAACGCCCTGAAAATAAAGAATTGCGAATCCTGCGGAGCGCCTCTGCCTCAAGACAACAACAAAAAGAGGGCCGTGATGAAGGTGAAGTGTGAGAATTGCCTGAGCGCGGAGGCGATTCAGCCGCAGATTTTTGTCGTGGCCGCCGCGCCGGAAACGTCCATAAAGTTTGAAGAGAGTACCGGTACACAGACGCAAGCTGTCGTAGATCAAGATGTTTTAGGAACGCAAAACTCGATTCCGATCGGCGTGAAGAATAACCATCCGGTGAAGAGGAGAGGAGTGGCTTGCGTTACCAAGTGTACCAAATGCAACGGCAGTGGCATCATCTTCATTGGCGGCACAAAAAACCAACAGAATAATGTAGAAAAGCCATTCCATTGTAATATTTGTAATGGTTCCTTCAGCCGGTACTCGTCGCTGTGGTCGCACAAGCGGCTGCACACCGGCGAGAAGAACTTCAAGTGCAACATCTGCGGCTTGGCCTTCGCCAAGGCCGCCTACCTGAAGAACCACTCGCGCATCCACACGGGCGAGAAGCCGTACAGGTGCAACGTGTGCGGCATGCAGTTCTCGCAGTCGCCGCATCTCAAGAACCACGAGCGCATCCATTCCGGCGAGCGGCCGTACGTGTGCGAGGTGTGCGACAAGTCGTTCGCCAGGCATTCCACCTTGTGGAATCACAGGAGGATACATACGGGCGAGAAGCCGTACAGTAATAACGATTACACGTGCATTCTCGGTGCCCTATATATTCCACCCAAATCGCAACTCAATCAGTATCAAACTCATTCCGATCAACTTACAACCATCAATGATACATTTCCCAACGCTAAGTTTTATCTTTTTGGTGATTACAACCTCCCTAATGTCACCTGGGAGACTGAAGACTTCTGCTCAACTGCATCTCTTCAACCACTCACTCAACCTACTCTGGGCGAAGCTATCGAAGTTGTTTCTAACATGTGTGCTCTCCACAACCTCTTTCAATGTAATACAATCACCAACAGTAGGGGTGCCCTTCTTGATCTCATTCTCTCGCCAGTGGAACTTACAATATCTAAAGCTGTAGACATCCTAATAACTCCTGATGACTTTCACCCACCACTCGAAACTTCCTTGCTGATTAGGGCCGAAAACACCAACACCCCTGGAGAAGAATCTTATTATGATTTCCGCAATGCAAACTTCACAGCTATACGCCAATGCTTGGAAGCGATTGATTGGGACGCAATCCTTGTCAAAAAGGACCTCTCCGACATGATCCACATCTTCTATGACGCTCTGTACTCCATTATTGAGCTATTTGTTCCACTGAAGAAGGTACGTACCAATACATTTCCACATTGGTACTCTACAGAACTCAGGAAGCTGATACGAGAGAAGAAGATGTCTCACATGATTTACAAAAGCTCAAGATGTGATATTTGTGGATCATGCTTCAACCAAGCTACACATTTAAAAAACCATGCTAAGGTCCACTCTGGGGAAAAACCTTTCAAATGTGATATTTGCTCAGTTGGATTTTCTGATAGGTTCGCATTGAAGCGCCACCGGAACATCCACGAGAAGTACGGGCGGACAAAACCACAGGGCGCGGCAGCCGTCACCGACGACGGCCACCAGCAGCTGCTCAGCCCGTCCGAGTCGATCTCGCCTTCGGCCACCGTCATCATCACCACAGACGCGGACGACCGCGTCGAGATCGTCGAGGCCAAGTACGAGGAGAAGTTCGAGACCGTCGACGGCAGCGATATCGACGAGGAGATGACCGACATGTCGGAGCTGCAGGTTCAGTTGCAATAG
Protein Sequence: MFDPNTITSQQSQIQYQQQPQQTDKDKGQEQKDTFAPFCYANVNMIHKISPNAGQAQTSTVNMSQLTDDKCYITQPFSYNYTLVNQNLLTQNAISNITFKCDVCGLMFAHLALLNHHKKVHHGQADQGQGQQQQITVQVQTQAQQQPQQQQQQQNALKIKNCESCGAPLPQDNNKKRAVMKVKCENCLSAEAIQPQIFVVAAAPETSIKFEESTGTQTQAVVDQDVLGTQNSIPIGVKNNHPVKRRGVACVTKCTKCNGSGIIFIGGTKNQQNNVEKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCDKSFARHSTLWNHRRIHTGEKPYSNNDYTCILGALYIPPKSQLNQYQTHSDQLTTINDTFPNAKFYLFGDYNLPNVTWETEDFCSTASLQPLTQPTLGEAIEVVSNMCALHNLFQCNTITNSRGALLDLILSPVELTISKAVDILITPDDFHPPLETSLLIRAENTNTPGEESYYDFRNANFTAIRQCLEAIDWDAILVKKDLSDMIHIFYDALYSIIELFVPLKKVRTNTFPHWYSTELRKLIREKKMSHMIYKSSRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPQGAAAVTDDGHQQLLSPSESISPSATVIITTDADDRVEIVEAKYEEKFETVDGSDIDEEMTDMSELQVQLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -