Gpol011061.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755085.1:27668943-27676184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.14 13 7.0 1.1 2 23 90 111 89 111 0.89 2 22 2.4 2.2e+02 3.2 0.4 2 16 172 185 171 193 0.72 3 22 0.38 35 5.7 4.9 2 23 202 223 201 224 0.94 4 22 1.5e-06 0.00014 22.7 1.4 3 23 235 255 234 255 0.98 5 22 0.00031 0.029 15.4 1.9 1 23 261 283 261 283 0.94 6 22 0.16 15 6.8 0.1 2 13 290 301 289 305 0.84 7 22 0.018 1.6 9.8 1.7 1 23 356 378 356 378 0.98 8 22 0.35 32 5.8 0.7 2 23 386 407 386 407 0.92 9 22 2 1.8e+02 3.4 0.6 2 14 415 427 414 428 0.87 10 22 0.39 36 5.6 0.1 2 22 428 448 427 448 0.92 11 22 0.0011 0.099 13.7 3.9 3 23 457 478 456 478 0.97 12 22 1.1e-06 0.0001 23.1 1.5 1 23 484 506 484 506 0.97 13 22 1.2e-05 0.0011 19.9 0.3 2 22 513 533 512 533 0.95 14 22 1 91 4.4 0.7 2 16 611 625 610 632 0.79 15 22 0.49 45 5.3 3.6 1 23 638 660 638 660 0.97 16 22 1 95 4.3 5.0 1 23 663 685 663 685 0.95 17 22 0.95 87 4.4 3.5 2 23 692 713 691 713 0.90 18 22 0.00015 0.014 16.4 0.3 2 23 723 745 722 745 0.92 19 22 0.41 38 5.6 0.6 2 23 755 776 754 776 0.96 20 22 0.0062 0.57 11.3 0.0 1 23 782 804 782 804 0.97 21 22 3.3e-05 0.0031 18.4 2.8 1 23 810 832 810 832 0.98 22 22 6.2e-05 0.0057 17.6 0.4 1 21 838 858 838 859 0.95
Sequence Information
- Coding Sequence
- ATGTATTATGATCTGGTAGGCTCAAGCTGTCCAATTTGTATCAAAAACCGGAGAGTCGTGAAGAAAACCCGAGATAGACATACAAGAAGCAAACTGATGAGCGAATCCTGCCAAATATTTCACGTGACTGAAAGGGATGTTACCCACATGACAATTGTGAGAATTAAATCCCTTCTCAGTTTCAGCAACAAGAAAAATAGTGGTGATCCTGGTATAGAAGAGATGTACGAGTACATTATGGATCTCAATGCGCCGACTGATCCAATAAAGTGTATTGATTGCACAAAATCTTTTTCGAAGCACATAGATTTGGCTCTGCACTCTGTAAGGCATTCGTCGCAGGAAATATACCGTTGTTGTTTCTGCATCCACGAAGAAACTAGTCCACTTTCTCTCACGACTCACATGGAAAAACATGAACAACTTTTCTGTACGAAGTGTGCCAAGAAAATTAAGAGTCGGAAAATAGCGCTCAAACATTCCAAATCACACCGCTTGGAATCCGCATTAATGAAATGCCATCTATGTGGTGAGGAACTCATCAGGAAGGACATGAAAAAGCACAAGCTGGAGGTCCACAAAGGATCCACACCCGGTTCTGTCAAATGCTCGGTTTGTAACAAAGAGTACTTGAGCCGTACGAGTCTCAAGAGTCACTACTCTCACCACCACAAGGAATTCGGTATCAACACCTCGAAGATATGCGACATTTGCGGCAAGGTGTATTGCAACAACGAGAAGCTCAAGGAGCACATGAGATCTCACACGGGAGACAAGCCTTTTTCCTGCATTGTTTGTCCCCAGAAATTCATGAGGAAGCAGCTCCTCACGAAGCACATGAGGAAGCACACTGGGGAACAGCCCATGGAATGCAAAATATGTGGTAGGAAGTTTGCTTACGAGTACGGTTATTGGTATGAATTGCTTCTCAGAGAAGTAAACGGTATTGAAAGAATCATCGTGGTTTTCGAAAACGGTGATGGTCCCGACAATTGCGGTAAAAGAATCATTCCGGCACATCATCCTGATTCGAATGCATCCAAACCCAAACCTAAAGACATCTCATTTCGATGTAAGACATGCAATTGCATCCTGCTCTCTCCCAAAGACCTTAACGAACATATGCGAGTACACTTGGAGGAAAAAGAAGTCGGGACGTGCAACATATGCGACTTGTCGATGAAAAAGGAAGAGTTGAAACGGCACAGACTCGAAGAGCACATCAGCAAAAGCGGCCTCATCAAGTGCTCAGTCTGTCCCAAGGAATACCAGCATTCTTCGAGCTGCCAGATCTGCGGCAAGGTGGAAGCCAACAATGAGAGGTTCTTGGAGCACCAGAGGACTTACACGGGGGAGAAACCGCTCCTTTGCTCGATGTGCTCGAAGCAATTCAGGACGAGGAACAACCTGGAGACCCACGTCAACAGCTGCCATCGGCGAGAGCAGAAGTTCGCTTGTAAGGAGTGTGGCAAAGGGTTTCGCAGCCGCAGCACTCTGTGGTACCACCGCAAGACCCATGTCGAGGATAAACCGAAGCGATGCGGGGGTTGCGGAAgaggtttcatttcaaaacagaATCTGAAGTCTCACATGAGGAGCTGCATCAAATTTTCTTCATCCAAACCGAGAACGAGAAGAACGAAAGTAACAACCAAACAAGAGAATGAAGAAAGCAGACcgaaaaaacaaagaaaaaagaatTATACCCCCGAAGAAGATCCGGATTTCGATGTGAAAGAGAAACTCATCAAACCCAAGAGAATAAGGAAAGAGCATCAAGACTATCAGCTAGAGAAAATCGTGAACCTCAACGAAGTCACTCAACCGTTGACCTGCAAAGTTTGCCCAGCTACGTTCAATACGCATTTGGACTTGGGTTTCCACTCCAAAGTCCACAACAAAGACGGCTTGTACTCCTGCCACATGTGCGACTATACAAAAGACGCCAAGAAAACGTTCAGGGTCCACATAAACCGCCACGACCTTTACAAATGCGAAAAATGCAACAAAATACTGAAGAGTAAGCTGTGCGCTTACAAACATTCCAAGTCGCACTCCCTCCAAACCACTGTCCAATGCGAGATATGCGGCAAGCACCTCAAGAAGCAATGCTTGTCGATACACAAGAAGATCCTCCATTGCGATGACCGGAACGCGCTGATCACCAAATGCCCCATCTGCAGCAAGGAGTACCAGAACCCCAGCAGCCTGCGGCAGCACTACTCCGCCATCCACAAGGAGCTGGGCATCGACGTCACCGTCGTCTGCGACATCTGCGGCATGCGGCTGTCCTGCAAGGGCAAGCTGCCGCAGCACCTTCGGACCCACACGGGCGACAAGCCCTTTGCCTGCAACGCCTGCCCGAAGAAGTTCATCGCCAAGGACATCTTGGCGGCGCACATGCGCGTCCACACGGGCGAGAAGCCGTACAACTGCTCGTACTGCGGCAAGAAGTTCGCGCACAGCGCCCCCTACCGGTACCACATTAAGACGCACACCGGCGAGAAGCGACACCAGTGCCAGCTATGCGGGAAGGGGTTCATCTCCAAGGCCAACATGAGGATCCATTTGAAGAGCTGCAATAATTTCTCCCTCAGATAA
- Protein Sequence
- MYYDLVGSSCPICIKNRRVVKKTRDRHTRSKLMSESCQIFHVTERDVTHMTIVRIKSLLSFSNKKNSGDPGIEEMYEYIMDLNAPTDPIKCIDCTKSFSKHIDLALHSVRHSSQEIYRCCFCIHEETSPLSLTTHMEKHEQLFCTKCAKKIKSRKIALKHSKSHRLESALMKCHLCGEELIRKDMKKHKLEVHKGSTPGSVKCSVCNKEYLSRTSLKSHYSHHHKEFGINTSKICDICGKVYCNNEKLKEHMRSHTGDKPFSCIVCPQKFMRKQLLTKHMRKHTGEQPMECKICGRKFAYEYGYWYELLLREVNGIERIIVVFENGDGPDNCGKRIIPAHHPDSNASKPKPKDISFRCKTCNCILLSPKDLNEHMRVHLEEKEVGTCNICDLSMKKEELKRHRLEEHISKSGLIKCSVCPKEYQHSSSCQICGKVEANNERFLEHQRTYTGEKPLLCSMCSKQFRTRNNLETHVNSCHRREQKFACKECGKGFRSRSTLWYHRKTHVEDKPKRCGGCGRGFISKQNLKSHMRSCIKFSSSKPRTRRTKVTTKQENEESRPKKQRKKNYTPEEDPDFDVKEKLIKPKRIRKEHQDYQLEKIVNLNEVTQPLTCKVCPATFNTHLDLGFHSKVHNKDGLYSCHMCDYTKDAKKTFRVHINRHDLYKCEKCNKILKSKLCAYKHSKSHSLQTTVQCEICGKHLKKQCLSIHKKILHCDDRNALITKCPICSKEYQNPSSLRQHYSAIHKELGIDVTVVCDICGMRLSCKGKLPQHLRTHTGDKPFACNACPKKFIAKDILAAHMRVHTGEKPYNCSYCGKKFAHSAPYRYHIKTHTGEKRHQCQLCGKGFISKANMRIHLKSCNNFSLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -