Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755083.1:8628884-8636653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00042 0.038 15.0 2.6 2 23 70 91 69 91 0.97

2 14 0.0037 0.34 12.0 5.6 1 23 97 119 97 119 0.99

3 14 0.13 12 7.1 4.1 1 23 125 147 125 147 0.98

4 14 0.027 2.4 9.3 7.8 1 23 153 175 153 175 0.97

5 14 0.0007 0.064 14.3 7.9 1 23 181 203 181 203 0.98

6 14 2.5e-07 2.3e-05 25.1 2.8 1 23 209 231 209 231 0.99

7 14 0.018 1.6 9.8 2.5 2 23 252 274 252 274 0.92

8 14 5.5e-05 0.005 17.8 2.8 1 23 283 305 283 305 0.98

9 14 0.0013 0.12 13.5 2.3 1 23 317 339 317 339 0.96

10 14 0.072 6.6 7.9 0.5 1 13 345 357 345 359 0.86

11 14 4.8e-06 0.00044 21.1 1.1 2 23 411 432 410 432 0.97

12 14 5e-05 0.0046 17.9 1.9 1 23 438 460 438 460 0.98

13 14 0.00031 0.028 15.4 1.7 1 23 470 492 470 492 0.98

14 14 5.1e-05 0.0046 17.9 1.6 1 23 499 521 499 521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00042	0.038	15.0	2.6	2	23	70	91	69	91	0.97
2	14	0.0037	0.34	12.0	5.6	1	23	97	119	97	119	0.99
3	14	0.13	12	7.1	4.1	1	23	125	147	125	147	0.98
4	14	0.027	2.4	9.3	7.8	1	23	153	175	153	175	0.97
5	14	0.0007	0.064	14.3	7.9	1	23	181	203	181	203	0.98
6	14	2.5e-07	2.3e-05	25.1	2.8	1	23	209	231	209	231	0.99
7	14	0.018	1.6	9.8	2.5	2	23	252	274	252	274	0.92
8	14	5.5e-05	0.005	17.8	2.8	1	23	283	305	283	305	0.98
9	14	0.0013	0.12	13.5	2.3	1	23	317	339	317	339	0.96
10	14	0.072	6.6	7.9	0.5	1	13	345	357	345	359	0.86
11	14	4.8e-06	0.00044	21.1	1.1	2	23	411	432	410	432	0.97
12	14	5e-05	0.0046	17.9	1.9	1	23	438	460	438	460	0.98
13	14	0.00031	0.028	15.4	1.7	1	23	470	492	470	492	0.98
14	14	5.1e-05	0.0046	17.9	1.6	1	23	499	521	499	521	0.98

Sequence Information

Coding Sequence: ATGCGTATTTTGTCTACAAGGTCGAATTCTCAGGAAGGTTTAATTGAAAAACTGTTAATCTCGCCCGATGGCCAGTCGGAAGAATACGGAAATCTAGTGCTGCAGCATCTGGGAGACTCCAAACCAAAACAATCATGCAGTTTCTATACTAAGCACAATCTGAGCCGAGAGAATAATTCGAAATCGCAAACTGACGAAAGGAACTTATCGTGCAACTTCTGTTCTAAAACATTCGCCAACAATTCCAAACGCAAAGAACACGAGAGGACCCACACCGGCGAGAAATTGTACTCCTGCACCTTCTGTTTCAAATCATTCAGCCACGATTCGAGTCGAAAAATACACGAGAGAACGCACACGGGCCAGAAAATATATTCGTGTCGGTTTTGCCTCAAAAAATTCGCCCGCAACGACACCTGCAAGATTCACGAGAGGGTTCATACTGGCGAAAAAATTCACTCGTGCCGTCACTGTTCCAAGTCGTTCAGCCACGATTCGAGTCGGAGGGTGCACGAAAGGATACATACTGGAGAGAAAACCTTCACTTGCTCCTTTTGTTCCAAAACTTTTTACCACCATTCGAGCCTCAAAACTCATGAGAAAATACATACGGGCGAGAAAAATTATCGGTGCCCGTTTTGCCCGAAGATGTTCAACGACAATTCGAACCGGAAAAAGCACCAGAGAACTCATACTGACGAAAGGAAACATACTTTGGACGAGGACTGGAACCTGAATGTCGGGAAGACAGAATCGTGCGAATACTGTGAAAGAAAATTTTCTGGTAGCCTGGCGCTACATCGCCACCATGCTAATGAACACCCTGGAGCTGCTATATCCAAACCGTATTCCTGTAGTACCTGTTCTAAAATGTTCAAGAAAAAAGCATATCTATCTAAGCATGAAAAGATTCATTTGCCCTGGAAGATTCCACCTCGCGAGAACAAATATTCGTGCAACTTCTGTTCTAGAAAATTCCCTGTGAATTACAAATTGAAACAGCACCTGGTATATCATACCGGCGAGAGAAATTATGAGTGCAACTTCTGTCCCAAGACCTTTGTTCTACGGTCAGATGGCCTATTTGCAAACCTCGACTGGCTGCAACAAAAACGCGAGAGACTCCCGCAATGTGACATATACCAAGGGTCATTTCTTTGTGATGAAACCTCCGAAAACCTATCCAATGAAAATGACGGAAGCAGCAATGAAAGATCTTACAGCGGAATGCAGTGCGAATCTTGCGACAAGTCATTCAAATTCCTCTCGGATCTCAACCGCCACACGATGATACACACTGGCGAGAAGAATTTTCCCTGCCGCTTTTGTCCGAAAAAATTCAACCGTGCTTATAATAGAAAAGCACATGAGAGGACCCACACAGGAGATAGGCCTCGCAAGGAAACCCATAAATGTGACGTTTGCTTTAAAGTTTTCGCGCGAAAAGATATACTCGCTCGTCACAAGAAAGTGCATGACGGTGACGTTAAGTTGTTTCCCTGCAGATACTGCCCCAAAACGTTCAATCGCAATTGGAATAAAACAGCTCACGAAAAAAGACATATTGAATGCAGTGCAGTCAGAAATTGA
Protein Sequence: MRILSTRSNSQEGLIEKLLISPDGQSEEYGNLVLQHLGDSKPKQSCSFYTKHNLSRENNSKSQTDERNLSCNFCSKTFANNSKRKEHERTHTGEKLYSCTFCFKSFSHDSSRKIHERTHTGQKIYSCRFCLKKFARNDTCKIHERVHTGEKIHSCRHCSKSFSHDSSRRVHERIHTGEKTFTCSFCSKTFYHHSSLKTHEKIHTGEKNYRCPFCPKMFNDNSNRKKHQRTHTDERKHTLDEDWNLNVGKTESCEYCERKFSGSLALHRHHANEHPGAAISKPYSCSTCSKMFKKKAYLSKHEKIHLPWKIPPRENKYSCNFCSRKFPVNYKLKQHLVYHTGERNYECNFCPKTFVLRSDGLFANLDWLQQKRERLPQCDIYQGSFLCDETSENLSNENDGSSNERSYSGMQCESCDKSFKFLSDLNRHTMIHTGEKNFPCRFCPKKFNRAYNRKAHERTHTGDRPRKETHKCDVCFKVFARKDILARHKKVHDGDVKLFPCRYCPKTFNRNWNKTAHEKRHIECSAVRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -