Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755085.1:27676455-27678610[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.15 14 6.9 3.5 2 23 16 37 15 38 0.94

2 18 0.45 41 5.5 5.1 1 23 41 63 41 63 0.96

3 18 0.068 6.2 8.0 0.2 1 19 66 84 66 88 0.79

4 18 0.079 7.2 7.8 0.1 1 23 94 117 94 117 0.95

5 18 0.0022 0.2 12.7 6.5 1 23 129 152 129 152 0.94

6 18 0.00036 0.033 15.2 0.3 2 23 162 183 161 183 0.96

7 18 4.1e-06 0.00037 21.3 3.3 1 23 189 211 189 211 0.99

8 18 0.0015 0.14 13.2 2.4 1 23 217 239 217 239 0.98

9 18 0.96 88 4.4 0.3 1 10 245 254 245 258 0.83

10 18 1.6 1.5e+02 3.7 0.5 2 12 290 300 289 311 0.84

11 18 4.1 3.8e+02 2.4 7.0 1 23 317 339 317 339 0.97

12 18 0.0014 0.13 13.3 1.2 1 19 342 360 342 360 0.93

13 18 4.6e-05 0.0042 18.0 0.2 1 23 368 391 368 391 0.96

14 18 0.017 1.5 10.0 3.5 1 23 403 426 403 426 0.96

15 18 0.00076 0.07 14.2 2.3 3 23 437 457 435 457 0.97

16 18 9.2e-06 0.00085 20.2 1.9 1 23 463 485 463 485 0.98

17 18 0.0013 0.12 13.4 0.3 1 23 491 513 491 513 0.98

18 18 6.2e-06 0.00057 20.7 0.4 2 22 520 540 519 540 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.15	14	6.9	3.5	2	23	16	37	15	38	0.94
2	18	0.45	41	5.5	5.1	1	23	41	63	41	63	0.96
3	18	0.068	6.2	8.0	0.2	1	19	66	84	66	88	0.79
4	18	0.079	7.2	7.8	0.1	1	23	94	117	94	117	0.95
5	18	0.0022	0.2	12.7	6.5	1	23	129	152	129	152	0.94
6	18	0.00036	0.033	15.2	0.3	2	23	162	183	161	183	0.96
7	18	4.1e-06	0.00037	21.3	3.3	1	23	189	211	189	211	0.99
8	18	0.0015	0.14	13.2	2.4	1	23	217	239	217	239	0.98
9	18	0.96	88	4.4	0.3	1	10	245	254	245	258	0.83
10	18	1.6	1.5e+02	3.7	0.5	2	12	290	300	289	311	0.84
11	18	4.1	3.8e+02	2.4	7.0	1	23	317	339	317	339	0.97
12	18	0.0014	0.13	13.3	1.2	1	19	342	360	342	360	0.93
13	18	4.6e-05	0.0042	18.0	0.2	1	23	368	391	368	391	0.96
14	18	0.017	1.5	10.0	3.5	1	23	403	426	403	426	0.96
15	18	0.00076	0.07	14.2	2.3	3	23	437	457	435	457	0.97
16	18	9.2e-06	0.00085	20.2	1.9	1	23	463	485	463	485	0.98
17	18	0.0013	0.12	13.4	0.3	1	23	491	513	491	513	0.98
18	18	6.2e-06	0.00057	20.7	0.4	2	22	520	540	519	540	0.94

Sequence Information

Coding Sequence: ATGGCAACAAAACTCACCAACCTCTTGAGCACTAGAATCCCTCTGGAGTGTAAATCATGCGAATTGACATTCGAAGACCATTTCAGCCTGGCATACCACTCGAAGAGTCACCACAAAGCCTTCGCTTGTCACATCTGCGATTTCAAATGCACGCTCAAAAACAAAATTCGCAGTCACATAAGTCAGCACTCCGGCTACCAATGCCAAGTCTGCGATATGTTCTTCAAGAAACCTGGTCCAGCACTGATCCACTCTTACGTACACggagctgaaaaaaaattccagtgcCAAGCTTGTGGCTCGGGCTTTCTGAGTCCTAAGCAGTTGCAGGCGCACGTCTACAAAGTTCATATGCGGAAATCCATGGTCAAACCAGAGACTGTTCACGAGTGCCACAAGTGCAACAAGAAGTACGGATCGAGAGATACGCTCCGGAGACATTTTTCCAGCAATCATCAAGAAATGGGTATAGACTTGTCATTGATATGTGAAGTTTGCGGCAAGCGAATGGAGACGAGAACGAGTTATAAGATCCACATGCGGATCCACACCGGGCAGAAACCGTACAAGTGCAATATTTGCGATAGAAGTTTTGCTGTAAAGTGCAGACTGACAACACATATCAGGACTCACACTGGTGAAAAACCGTATGAGTGCTCGTTCTGTGGGAAAAAATTCGGGCAACACGCGCCTTACTGGTATCACACAAAAACTCACACTGGCGATAGAAAACACGTTTGTAAAGTTTGTGGGAAAAGgcGAAGAAAAGCTGGTAGGCCTGTCACGAAACGGACTACAACTAATCACAAAATCGCCAGGGACAAAGAGAACAAAATCCAAAACCTATTCGAATCCCAGGAGCCGATGCAATGCAACCTCTGCAAGCAGAACTTCAAAACTATCCTAGACTACGCCTTCCACTCGAAATACCACAACGAAGAGGGTCACTTCTCTTGTCATTTCTGCCTCAAAAAGGTACTCAAGAAAGACCACTTCCGAAAGCACGTGCTTTCACACGACGGCTTCAAGTGCGTGCAATGCAACAAAGTCTTCAAGAGAAAATCCACCGCGTTGAACCACCCGCACAAATGGGAGAAGCTGTACCAGTGCAGCATCTGCGGCAAGACTTTAGGCTCCTCGTACAGCCTGAGCATCCACTTGACCAGCGTACATGAGGCTAGAGAAAGCGGCCTGTCTCCACCCAAGTTCCAGTGCAGCATTTGCCAGAAGCACTACCAGTACGAGACAGGCTTGCGGCTGCACTATTCCAGCAGACACAAAGAGCTAGGCATCGACTACACCGTCATCTGCGACGTCTGCGGAAAGAAGCTGTCGTGCAAGAGCAAGCTGACGCAACATCTGCGGACCCACAGCGGCGTGAAACCGTTCTCCTGCACCGTCTGCTCTAGGAAGTTCACCACCAAAGACCTCATGACGTCGCACTTGAGGGTGCACACGGGGGAGAAACCGTACGTCTGTATGTACTGCGGCAAAGAGTTCGGCCAGGGCGCCCCCTATCGGTACCATCTGAAGACGCACACGGGGGAAAAGTCTTGCAGCTGCCCCATTTGCGGCAAGCAGTTCATTTCGAAAGGGAATATGAGGATCCACATCAGGAGCTGTAGTACGGGCAATGGACGCGAGATCGGAGCCCAAGCGGTGGCTGGGTGGAAGAAGATCAAGGCGGAAATCGCCGAAGAACCCAACTTGCCTGACTAG
Protein Sequence: MATKLTNLLSTRIPLECKSCELTFEDHFSLAYHSKSHHKAFACHICDFKCTLKNKIRSHISQHSGYQCQVCDMFFKKPGPALIHSYVHGAEKKFQCQACGSGFLSPKQLQAHVYKVHMRKSMVKPETVHECHKCNKKYGSRDTLRRHFSSNHQEMGIDLSLICEVCGKRMETRTSYKIHMRIHTGQKPYKCNICDRSFAVKCRLTTHIRTHTGEKPYECSFCGKKFGQHAPYWYHTKTHTGDRKHVCKVCGKRRRKAGRPVTKRTTTNHKIARDKENKIQNLFESQEPMQCNLCKQNFKTILDYAFHSKYHNEEGHFSCHFCLKKVLKKDHFRKHVLSHDGFKCVQCNKVFKRKSTALNHPHKWEKLYQCSICGKTLGSSYSLSIHLTSVHEARESGLSPPKFQCSICQKHYQYETGLRLHYSSRHKELGIDYTVICDVCGKKLSCKSKLTQHLRTHSGVKPFSCTVCSRKFTTKDLMTSHLRVHTGEKPYVCMYCGKEFGQGAPYRYHLKTHTGEKSCSCPICGKQFISKGNMRIHIRSCSTGNGREIGAQAVAGWKKIKAEIAEEPNLPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -