Gpol011065.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755085.1:27689010-27695064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.21 19 6.5 0.0 2 23 29 50 28 50 0.96 2 23 3.4e-05 0.0032 18.4 0.4 1 23 114 137 114 137 0.95 3 23 1.3 1.2e+02 4.0 0.0 2 23 187 208 186 208 0.86 4 23 1.2 1.1e+02 4.1 1.1 1 23 214 238 214 238 0.82 5 23 5.2e-05 0.0047 17.8 0.3 1 23 244 266 244 266 0.97 6 23 0.26 24 6.2 0.2 1 23 272 294 272 294 0.95 7 23 0.052 4.8 8.4 0.9 1 22 301 322 301 324 0.88 8 23 0.00029 0.027 15.5 4.1 1 23 347 369 347 369 0.98 9 23 0.052 4.8 8.4 0.6 1 22 376 397 376 397 0.92 10 23 0.016 1.5 10.0 0.2 2 23 451 472 450 472 0.96 11 23 3.3 3e+02 2.7 5.3 1 23 478 500 478 500 0.97 12 23 0.012 1.1 10.4 2.0 1 23 506 528 506 528 0.91 13 23 0.00019 0.018 16.0 3.6 1 23 534 557 534 557 0.98 14 23 0.00072 0.066 14.2 3.9 1 23 569 592 569 592 0.94 15 23 0.014 1.3 10.2 0.9 3 23 603 623 602 623 0.98 16 23 0.00021 0.02 15.9 3.4 1 23 629 651 629 651 0.97 17 23 0.56 51 5.1 1.3 2 23 691 712 690 712 0.91 18 23 0.18 17 6.7 1.7 1 23 747 769 747 769 0.89 19 23 0.00023 0.021 15.8 3.6 1 23 775 798 775 798 0.97 20 23 0.00019 0.017 16.1 2.2 1 23 810 833 810 833 0.95 21 23 0.0014 0.13 13.4 1.4 3 23 842 862 841 862 0.99 22 23 7.9e-06 0.00072 20.4 2.2 1 23 868 890 868 890 0.96 23 23 3.7e-05 0.0034 18.3 1.3 1 23 896 918 896 918 0.98
Sequence Information
- Coding Sequence
- atgaaacctttttatttcaggaaaatttaTGACAACTATATAATGATCAAAGGAGAATATTATAACAGCGAAACCGAATCAATAGTATGCGAAATTTGCAAAACCTCCGTCGGCAACGAAGTGGATTATGCTCTGCATACATTAACACACTCTGAAGATGGTacattcaaatgttttctatgTCCGGTGGTAGCAAGAATGACCGAAGAAAGAGTCGAATATCACATAAGATTCCATCTGAAACGATCTGTAGCTAAATGCATTTTGTGTCCGCAATCGAACTTCTATTCAATCAAGCAATTCAATGAACACCAAAATATCCATACTGGAGCCAAGCCATTCGCCTGTTCATATTGCGAAGTTTCTTTCAGCTATTCCGGCAGTTTGAAGGCGCACATGGAAAACAAACATCAGGAACTTCTCATTGAAGAAGAAAGACAAGCGCAGATGAAAGAACGAAAAGAAATGATCTCGAAAAAGAAGCAGATGACAAGGAAACTGAATTGGGAGAAGGAGAGAAAGGCAATGCCACCTCCTCTGCCGACCACGGGACCGATGGAATGCGAAGAATGTGGGGCGATGTTCCTCAACAACGTCGATTATGCCCTCCACGTGGTAGAGCACTCTGAAGATGGGTCATTCGCCTGTTTCCTCTGCCATACCGTCATCAAAAGTAGCGATAATAAGCAAGTAGAGAAGCATATAAGGATTCATGAAGGCACGTGGGCGTACATCTGCAAAATATGTGGAGTGTCTACGTCTAGCAAAGAGCAATTTCAATACCACATGGCTATTCACAAGGGAAAGGGAAATTACCAGTGTGATATATGTCGTATTAAGGTGTTGAGTTCTGCGGCGCTGAGTAGCCACAAGAAGATGCATGATAAGAAGAGGAACACTTACGACTGCACGATAtgcaagaaaaaatacaagattAAATTGACGTTGATGGCCCACAATGCTAATTATCATGACGGTCCACCAGCTACCAGTGAAGCAAAGAAATACTCGTTGGAACAAGACGATGATTTGGAACCTTTCAAGTGCAAGTTCTGCACTAAGAGCTTCTCTCGAGAAACGACATGGAAACTACATGTGAAACGTCATAGAGGGAAGAACAAACATCACAAGTGCGATGACTGCGGTAAATTGTTCCTTAGCAAAGCTGCGAAAAGTACTCATATGAGGTCGATCAAAAAAGAACACGCAGTCAAAGAAGAGGACGTCTCTGACTACGAGGTCGAATCATCCAAGCCAAAGAAAACTAAAACCTCGAGAAAGTCCAGGAACCCCAAGCGCAAGAAAAGCGACATCGTCCATCCACCAGCAGTAGAATTGGATGAACCCATCCAGTGCGACGTATGTAGCGAGACCTACAAAAACAACGTCGCCTTCTCCTTACATTCCATGAGCCACAGCGATGATGGCAAGTACTCCTGCCACATCTGCCATTTCCGGAATGCCTCCAAGTACCACATAGAAATGCACGTGAGGGCGCATGAAGGCACGACCAGCTACAAATGCGAGGTCTGCCAGAAGGCGTTCACAGTCAGCACCCACGCAATAGAGCACAAGTACTTCCACACAGGGGAGAAGCCCTTCCAGTGCGAGATCTGCGGCAAACACTTCATGTTCTCTCGGTTTCTAGCCTCGCACAGACGCACACAGCACTGGGAAATCATGACCGGCACTCCCTTGGTCAAGTACGACTGTACCCTTTGCAAAAAGCACTACACCTCCTCCAGCGGTCTCAAGAGACACAACTTGAGGAACCACAACACCGAGGGCATCGACACGTCGGTGCTCTGCGATATCTGCGGGAAGAAGATCTCCAGCAACGAGAAGCTCAAGTTCCATAGAAGGGTGCACACTGGATACCGGCCGCATAGCTGCGAAGTCTGTTACAAGAGCTTTTCGACCAAGGAGCAGAAGAAGGAGCACCTGAGGATTCACACCGGGGAGAAACCATCCAAAACATACAAGTTGAGATCCAAAAAGAAACGTAAAAAATCCAAATACAAACGAACTTCAGAGGAGCACCCACCACCACTCAAACTGGAACAGCCAATCCATTGCGACGAATGCGAACAGCAATTCACGAATAACGTGGCTTTCGCCTTCCATTCGAAAACCCATGACATAGAAGGCAAATACAACTGCCATCTATGCATCAACTTCCGCAACGCTTCGAGGTACCAGATAGAGATGCACGTAAGAGCTCACGAGGGCACCACCAAATACAAATGCGAAATCTGTCAGCAGGGATTCACTATCAGCACCCACGCTATTGAACACAAGTATTTCCACACCGGAGAGAAACCCTTTCAGTGCGAGATATGCGGAAAACACTTCATGTACTCTTGGTTCCTCTCCAGACACAGAAAATCCACCCATTATGAGATACTGACTGGCAGTCCGTTGGTCAAGTACGACTGCAACATCTGCAGCAAGCACTACGCCACTGCATCCAGCCTGAGCAGACACAAGCTCAGCAAACACAAAAAGATCGACGGCTCGGTGCTCTGCGACATCTGCGGCAAGCGGCTCTCCAGCAAGGAAAAGCTCAAGTTCCACCTGAGAACCCACACCGGATACAAGCCCCACGCTTGCCACCTGTGTCCCAAGAGCTTCTCCAAGAAGGACCAACTGGTGGAGCACGTCAGAGTGCACACAGGAGAGAAACCGTACATCTGTCGGTACTGTGGGCGTGGCTTCACGCAGCGCACGCCGCTGAAAACACACGAGAAGACACACCTCCGAGACGAATCCGCCCCCTGTCCGGTTTGCGGCCTCGCTACTGGCTGCTCGCACCTGCCCGACAAACCTCTCGCACGCCGATACTTCACGCCCTGTAGGCTGTGCGGCGAGCTCGGGCCGTGCCCCCATATCAAGGCCAAGGACGGGCCTCCGTGTCCCGTTTGCGGATCGCTGGCGCCATGCGAGCATCTGGTGAAGATGAGCATGATGACGCCCTCCAGGGAGGAAACGCCGAGCTGCGGTGTATGCGGACAGACGGAGCCGTGTGTGCATATGCAGAATTTTTTGCCAGTGCCATTCTCTTATCCTCCGTAG
- Protein Sequence
- MKPFYFRKIYDNYIMIKGEYYNSETESIVCEICKTSVGNEVDYALHTLTHSEDGTFKCFLCPVVARMTEERVEYHIRFHLKRSVAKCILCPQSNFYSIKQFNEHQNIHTGAKPFACSYCEVSFSYSGSLKAHMENKHQELLIEEERQAQMKERKEMISKKKQMTRKLNWEKERKAMPPPLPTTGPMECEECGAMFLNNVDYALHVVEHSEDGSFACFLCHTVIKSSDNKQVEKHIRIHEGTWAYICKICGVSTSSKEQFQYHMAIHKGKGNYQCDICRIKVLSSAALSSHKKMHDKKRNTYDCTICKKKYKIKLTLMAHNANYHDGPPATSEAKKYSLEQDDDLEPFKCKFCTKSFSRETTWKLHVKRHRGKNKHHKCDDCGKLFLSKAAKSTHMRSIKKEHAVKEEDVSDYEVESSKPKKTKTSRKSRNPKRKKSDIVHPPAVELDEPIQCDVCSETYKNNVAFSLHSMSHSDDGKYSCHICHFRNASKYHIEMHVRAHEGTTSYKCEVCQKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSRFLASHRRTQHWEIMTGTPLVKYDCTLCKKHYTSSSGLKRHNLRNHNTEGIDTSVLCDICGKKISSNEKLKFHRRVHTGYRPHSCEVCYKSFSTKEQKKEHLRIHTGEKPSKTYKLRSKKKRKKSKYKRTSEEHPPPLKLEQPIHCDECEQQFTNNVAFAFHSKTHDIEGKYNCHLCINFRNASRYQIEMHVRAHEGTTKYKCEICQQGFTISTHAIEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGSPLVKYDCNICSKHYATASSLSRHKLSKHKKIDGSVLCDICGKRLSSKEKLKFHLRTHTGYKPHACHLCPKSFSKKDQLVEHVRVHTGEKPYICRYCGRGFTQRTPLKTHEKTHLRDESAPCPVCGLATGCSHLPDKPLARRYFTPCRLCGELGPCPHIKAKDGPPCPVCGSLAPCEHLVKMSMMTPSREETPSCGVCGQTEPCVHMQNFLPVPFSYPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -