Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755085.1:29341926-29347646[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.6e-05 0.0069 17.3 2.1 2 23 2 23 1 23 0.97

2 16 7.5e-05 0.0069 17.3 3.3 2 23 26 48 25 48 0.95

3 16 0.31 29 5.9 0.6 1 23 57 81 57 81 0.79

4 16 6.3e-06 0.00058 20.7 0.6 1 21 89 109 89 110 0.94

5 16 0.00068 0.062 14.3 0.5 1 23 118 140 118 140 0.98

6 16 0.018 1.7 9.8 3.7 1 23 146 168 146 168 0.98

7 16 4.6e-05 0.0042 18.0 2.7 1 23 174 196 174 196 0.98

8 16 1.7e-05 0.0015 19.4 2.9 1 23 202 224 202 224 0.99

9 16 0.034 3.1 9.0 2.5 2 23 366 387 366 387 0.95

10 16 0.037 3.4 8.8 1.7 1 23 402 425 402 425 0.97

11 16 0.19 17 6.6 0.1 2 23 430 453 429 453 0.92

12 16 0.0035 0.32 12.1 1.4 1 20 463 482 463 484 0.93

13 16 3.4e-07 3.1e-05 24.7 1.3 1 23 492 514 492 514 0.98

14 16 0.0093 0.85 10.7 2.7 3 23 522 542 520 542 0.96

15 16 0.0029 0.27 12.3 0.7 1 23 548 570 548 570 0.95

16 16 1.8 1.6e+02 3.6 3.7 1 23 576 598 576 598 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.6e-05	0.0069	17.3	2.1	2	23	2	23	1	23	0.97
2	16	7.5e-05	0.0069	17.3	3.3	2	23	26	48	25	48	0.95
3	16	0.31	29	5.9	0.6	1	23	57	81	57	81	0.79
4	16	6.3e-06	0.00058	20.7	0.6	1	21	89	109	89	110	0.94
5	16	0.00068	0.062	14.3	0.5	1	23	118	140	118	140	0.98
6	16	0.018	1.7	9.8	3.7	1	23	146	168	146	168	0.98
7	16	4.6e-05	0.0042	18.0	2.7	1	23	174	196	174	196	0.98
8	16	1.7e-05	0.0015	19.4	2.9	1	23	202	224	202	224	0.99
9	16	0.034	3.1	9.0	2.5	2	23	366	387	366	387	0.95
10	16	0.037	3.4	8.8	1.7	1	23	402	425	402	425	0.97
11	16	0.19	17	6.6	0.1	2	23	430	453	429	453	0.92
12	16	0.0035	0.32	12.1	1.4	1	20	463	482	463	484	0.93
13	16	3.4e-07	3.1e-05	24.7	1.3	1	23	492	514	492	514	0.98
14	16	0.0093	0.85	10.7	2.7	3	23	522	542	520	542	0.96
15	16	0.0029	0.27	12.3	0.7	1	23	548	570	548	570	0.95
16	16	1.8	1.6e+02	3.6	3.7	1	23	576	598	576	598	0.92

Sequence Information

Coding Sequence: ATGTCTTGTGACAAATGCCAAAAGAATTTCAAAACCCTTCGCCTGCTGAAACAACATGAAAGAATCCACAATACGGTTTGcgaaaaatgtaattttgatttcaagagTCACAGTAGTCTGAGACAACATATGAGAGAGAATCATCCAAAATGTTCAAAATTGAAGGATTTCAAATGCAGAGTTTGCCCAAAGtcagtattttcatcagaaaaagaaTACCTAATACATGTACGAGATTATCATgaaggaaaaattattgaatcccATATGTGTAGTGATTgtggaaaaacatttcgtacTGGATCTGAACTGAGTTTACACATGAAATCAAAGTGTGGTACTGAAAagcaatatatttgtaagGAATGCGGAAAAAAGATGATGTCTCCAGGATCCCTATACACTCATCTGAAAAGACACAaaggaaatttgaatttcatgtgtAGATTTTGTGCCAAATGTTTTCTCACATCTGGTCAACTGAAAGTTCATGAACGCAAACatacaaaacagaaagattTTGTTTGTGATaTATGTAGCAAAGGTTTCTGCCATCGCCAGAGTTTGATAACTCATATTTCTGTCCACACTGGTATCAAACCATATCAATGTGAGGGGTGTGGAAAATCATTCAGTTGCATTAGCAACCTGTTGAAACACAGAAAATCACATAAAAATACCTGTGGGACTCTTCCATTGACATCACACAGGGTCAAGAACCCTgccacaaaaataaaattaagaATCAATACTCCAGAGTCCTCAAAACTGAAAAGAGCACAGATGAAGAAGGAGTTACAGATAAAATTTGCTGAGTTAGAAGAAGCTTTGGAAAAGGAGAGTGATGAAAATTCTCTATCAGAGAAAACTGAAACTTCCTGCAGAAATCTCGTGAAAAAAGAATTATCTGATGATTTTGAGCTGTCAGAGGAATTAGAATCAGATATATCAGAAGTTGAGTCTGAAGAGGAATATGTGCCTAataatcaaaaaacaaaaggcAAAGTTAAAAAACAGAAGAGGAATGTTCATACTTTAGACAGTGATATACAGAGATTCATAAGAGAAAGAAACCTAGtgaagGGCATTATGGCCTATTGCCAGTATTGCTCCAAGGGATACACCAGCTTTGGTTGTTTGTATAAACATGAACAAGAACACTCAAAGAGCGATATAAGCCCCAAAGAATCAAAACCATCAACTTTCAAGTGTAGCTGTTGTAAGATGATTTTTGAAACATCAGAAGCAGTCAAGGAACATCAGCAGACTGCTCACGCAGATATGTTATCTTGTCCGGATTGTCCGGACCGTATTTTCTCGCGCCCTGACATCCTCAAGCTGCACCTCGAGAACTTCCACAAGGGCGTGCCGAGGAAGAGTTACGTCTACATTTGCGAGAAATGCGGCCAGAAGTTCCGGGCCAAATGCCTGCTGAACAACCACGAGACCACCGATTGCGGCAAGACCTCGAAATACCGCTGCCAGGTCTGCCAGAAGCGGTTCTCCAATCAGTACACTCTCAAGGCGCACATGGTCGTGCACAGTGCGGAGAAGAAGCTGGCGTGCGCCTTTTGCGGCAAGTGTTTTCACTGGAAAGGACAGCTCAAGGTGCACGAGAGATCGCACACGGGAGAGAAGCCGTACACGTGCCTGTTCTGCCCCAGCTCGTTCGCCTACAGGGACAGCCTGATAAGGCACAGCTCGCTGCACACGGGCGTCAAGCCGTACTTGTGCAAGTGCTGCGGCTGGAGGTTCAGCTGCATCGGGAACCTCATCAAGCACAAGGTGACGCACGCGACCACGTGCGGCGTCTGGTACAGGGAAAACGAAAAGGATGTTCAGTGA
Protein Sequence: MSCDKCQKNFKTLRLLKQHERIHNTVCEKCNFDFKSHSSLRQHMRENHPKCSKLKDFKCRVCPKSVFSSEKEYLIHVRDYHEGKIIESHMCSDCGKTFRTGSELSLHMKSKCGTEKQYICKECGKKMMSPGSLYTHLKRHKGNLNFMCRFCAKCFLTSGQLKVHERKHTKQKDFVCDICSKGFCHRQSLITHISVHTGIKPYQCEGCGKSFSCISNLLKHRKSHKNTCGTLPLTSHRVKNPATKIKLRINTPESSKLKRAQMKKELQIKFAELEEALEKESDENSLSEKTETSCRNLVKKELSDDFELSEELESDISEVESEEEYVPNNQKTKGKVKKQKRNVHTLDSDIQRFIRERNLVKGIMAYCQYCSKGYTSFGCLYKHEQEHSKSDISPKESKPSTFKCSCCKMIFETSEAVKEHQQTAHADMLSCPDCPDRIFSRPDILKLHLENFHKGVPRKSYVYICEKCGQKFRAKCLLNNHETTDCGKTSKYRCQVCQKRFSNQYTLKAHMVVHSAEKKLACAFCGKCFHWKGQLKVHERSHTGEKPYTCLFCPSSFAYRDSLIRHSSLHTGVKPYLCKCCGWRFSCIGNLIKHKVTHATTCGVWYRENEKDVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -