Gpol018810.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755089.1:22018747-22020579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.036 3.3 8.9 1.9 1 23 132 155 132 155 0.97 2 13 0.001 0.094 13.8 0.2 2 20 169 187 169 189 0.91 3 13 0.072 6.6 7.9 2.8 1 21 203 223 203 224 0.94 4 13 0.0051 0.47 11.6 0.1 2 23 271 293 270 293 0.92 5 13 0.08 7.3 7.8 0.3 1 23 304 327 304 327 0.85 6 13 5.7e-05 0.0052 17.7 2.9 1 23 337 359 337 359 0.96 7 13 1.8e-06 0.00016 22.5 0.8 3 23 367 387 366 387 0.97 8 13 4.4e-05 0.004 18.1 3.3 1 19 393 411 393 416 0.91 9 13 0.00049 0.045 14.8 2.6 1 23 424 446 424 446 0.97 10 13 0.00076 0.069 14.2 0.7 1 23 452 474 452 474 0.96 11 13 0.00045 0.042 14.9 0.6 1 23 480 503 480 503 0.96 12 13 4.2e-05 0.0038 18.1 0.9 1 23 517 539 517 539 0.96 13 13 3.9e-05 0.0036 18.2 2.6 1 23 545 568 545 568 0.97
Sequence Information
- Coding Sequence
- ATGCTTCAAGACATATGTTCAATTTGTTTGGAATCCAGAGAAACAATCAAAATAATACACGATGTAGACGAAAGTGGTTTGAAGTTGTCATCGAAGTTGAGCTACATAGCTCCAGAAGTGGATTGGTTGGTAGAATACAAAATATGTGGAATCTGCGTGAACGATCTCAATAAAGCATGTAGATTCAGAGAACAGTGTTTGAATGTATTGTATGAAGTTAAATTAGAAAAATACCTCTACAAAACCGAACAAGCTCAAATACCATCTCCTGTAATAGAAGATAGTGTAGATGACCAGGCTGAAGGTTTTGAAGACCATGGTGATTCATCAAACGATTCCACCGAATTCAAAGAAGACGCACCTGCTGAGGAAGTACAGGATACCAAGCAAATCTTCATATGTTTCCACTGCAATGCAAATTTCAACCTGAAGAGAGAAATCAAAGAACACATTCAAAAAGAACATACCGACCGACAAGATGCAGTCAAGTACAAAAGAACTGAAGAATGCCTAGAGTGTGGACGAAAATTTGCTAAGAAAGAATCTCTTAAAGAACATTCCATGATGTGTGATGGTGTGAACAGACATAATACAATGAAACGTGAGCACCAGTGTGATAAATGTAAGAGATTTTATACAACAGAAAAGATATTAAAAGCACACAGAAAACGATGCATGAGGAACATCATTGGGGACCTTGATGATTCGAATAATGAGAGAGATGATAAAGATGAAGATTCCAGATCTGAAAAGAAGGTGACTCGAAGGAGACGCAAAAAAGATGAGATTAAGAAAGATAGTGAGCCTTTAGTTTGTAAAATGTGTGATGAAGCTTTTGATTCTATATTAGAGTTACGAAAACATGTATCCTTGGATCACAAGCAAGAAAGAATAGGACGTTTCACCACATTCACTTGCGATATCTGTTCGCAGAGTTTTAACTTTGTTAGAGCAATCATTGATCACTATGTTAAAATACATGCTATAGAAGAAAAGCAAGTGAAACCTTATAGCTGTGATGTTTGCAACAAAAGATTCAGGGTGTCAACCAATCTCACAATCCATAAACTACATCATGAGGGTAAACGAATGAATATTTGCAGTATTTGTGGCAAAAGTTTCATTACCAAGCATGATCTTCTCAGACATGAGATGATACATTACAGCGAACGTAACTACAAGTGTGACAAATGtgagaaatcattcaaaactgaTGATAACTTGCGGAAGCATTGCTTGATAGTGCATACAGATCAGATGTTGTGGAAATACATCTGTCATATCTGTGGAAAACGCTTCCCTGTGAAGTCGAATCATGACATTCATGTCAGGAGACATATAGGAGAGAAGAACTTCAGTTGTGCTTTGTGTAAAAAAGCATTCGTAACGCGAAAAGAGATGCGTGAGCATGTCAGCAACCACACCAACGATAGACGTTTCCGATGTGACCAGTGTGGTAAAGAATATAGGAATAAAAAGGGCATGGATATACACTTGACGAAAGCGCATGGTATAGGGAACGCTAAGATTCCAGTTCGTGAGAGGAAGCATGCTTGTCATATCTGCCCTGCCAGGTTCCCTGATCGATCGAAACTTGCAAGGCATCTCGGTACTCATTCCGGACTGAAACCGTTCTCTTGTTATTCTTGTGAACGAAGGTTCACCGATAAATCCTACTTGAAGCAGCATTTGCAGAAGGCTCATAACATTTTTGAGACACCTCCAAATGCTCTCAAAGAACTGGATGACCCCATGAAGAGTGAATTTTATTAG
- Protein Sequence
- MLQDICSICLESRETIKIIHDVDESGLKLSSKLSYIAPEVDWLVEYKICGICVNDLNKACRFREQCLNVLYEVKLEKYLYKTEQAQIPSPVIEDSVDDQAEGFEDHGDSSNDSTEFKEDAPAEEVQDTKQIFICFHCNANFNLKREIKEHIQKEHTDRQDAVKYKRTEECLECGRKFAKKESLKEHSMMCDGVNRHNTMKREHQCDKCKRFYTTEKILKAHRKRCMRNIIGDLDDSNNERDDKDEDSRSEKKVTRRRRKKDEIKKDSEPLVCKMCDEAFDSILELRKHVSLDHKQERIGRFTTFTCDICSQSFNFVRAIIDHYVKIHAIEEKQVKPYSCDVCNKRFRVSTNLTIHKLHHEGKRMNICSICGKSFITKHDLLRHEMIHYSERNYKCDKCEKSFKTDDNLRKHCLIVHTDQMLWKYICHICGKRFPVKSNHDIHVRRHIGEKNFSCALCKKAFVTRKEMREHVSNHTNDRRFRCDQCGKEYRNKKGMDIHLTKAHGIGNAKIPVRERKHACHICPARFPDRSKLARHLGTHSGLKPFSCYSCERRFTDKSYLKQHLQKAHNIFETPPNALKELDDPMKSEFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330971;
- 90% Identity
- -
- 80% Identity
- -