Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755083.1:49825241-49833094[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-06 0.00022 22.0 1.7 1 23 191 213 191 213 0.98

2 9 2.3e-08 2.1e-06 28.4 1.6 3 23 221 241 219 241 0.98

3 9 0.00018 0.016 16.1 0.4 1 23 247 269 247 269 0.98

4 9 1.4e-06 0.00013 22.8 1.1 1 23 275 297 275 297 0.99

5 9 1.7e-05 0.0016 19.3 1.7 2 23 404 425 403 425 0.96

6 9 2.2e-09 2.1e-07 31.6 1.6 1 23 431 453 431 453 0.98

7 9 0.00051 0.047 14.7 0.6 3 23 461 481 459 481 0.97

8 9 7.5e-05 0.0069 17.3 0.9 1 23 487 509 487 509 0.99

9 9 0.015 1.4 10.1 0.8 1 23 515 539 515 539 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-06	0.00022	22.0	1.7	1	23	191	213	191	213	0.98
2	9	2.3e-08	2.1e-06	28.4	1.6	3	23	221	241	219	241	0.98
3	9	0.00018	0.016	16.1	0.4	1	23	247	269	247	269	0.98
4	9	1.4e-06	0.00013	22.8	1.1	1	23	275	297	275	297	0.99
5	9	1.7e-05	0.0016	19.3	1.7	2	23	404	425	403	425	0.96
6	9	2.2e-09	2.1e-07	31.6	1.6	1	23	431	453	431	453	0.98
7	9	0.00051	0.047	14.7	0.6	3	23	461	481	459	481	0.97
8	9	7.5e-05	0.0069	17.3	0.9	1	23	487	509	487	509	0.99
9	9	0.015	1.4	10.1	0.8	1	23	515	539	515	539	0.95

Sequence Information

Coding Sequence: ATGTTTTACACGAGATGTCCGGCGTGCCTCCACCAATTTGTGACACTGTCTAGGGACTTGGGGTTGTTGGGGCCCACCGTTCCGCTGGGAGTCGAAGCGGACACAGTGCCGCCCAGAGACCAAAGCCTGCCCTCGCCTGCCCCCTCCCCTTACCCGGCCACGCAGGCGGAGCCCAGAGAGGACGAGATCCAACAACCTGAGCCCAATATGGATTTGGAGCCGAGGCCTGCCAGTCAGTGTTTCTCCAACGAGCTGCAGCAGCAACAGCAACAGGTAGGTCTCCAGGTCTACCAGCAGTACGCACGCGCGCCCCCGCCCGCCGCTCCCCCGCCCGTGCCGCCCCACCTGCTCGGCGCCGGCAGCTTCTCCGCCCTGCAGTACCTCAAGCAGCCCGGCGGCATGCTCGCCGGTCTCGGGCCGGACGTCAGCGGCCAGCTGGACCAGTACGCCGGCGGCATGCAGGAGCTGAGGGCGGCCGCCCTGCCGGACATCAtccagcagcagcagcagcagcagcagcacgCGGGGTTGAAGAAGGCTGGCGCCGGCATCAACGGGGAGTTGAGGCTGTTCAAGTGCCTGACGTGCGGCAAGGACTTCAAGCAGAAGTCGACGCTGCTGCAGCACGAACGCATCCACACGGACAGCCGACCGTACGGCTGCCCGGAGTGCGGCAAGCGCTTCCGCCAGCAGAGCCACCTGACGCAGCACCTGCGCATCCACGCCAACGAGAAGCCGTACGCGTGCGTGTACTGCGAGCGCACGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCGGGTGAGAAGCCGTATGAGTGCCCCGAGTGCGGCAAGCACTTCCGGCAGAAGGCCATCCTCAATCAGCACGTGCGCACACACCAAGACGTCAGTCCCCACCTGGTCTTCAAAAACGGCATCAACCCAACTCTCTGGCCCCAAGACGTGCCCTTTCCTCCAGACGAGGGCAAAGAAGAAGTCCAATCGACCTACGGTGACACCGACGCAGACAGGGCCTCCTGCTTCTCCCCCAATGGCCTCCAATACCCAGCCTACTTCAAGGACACCAAGGGCATGAACCACTTCGGCGCCTCCACCCAATTCGGCGCTTTGCAATACCTCAAGCAGCAACAACCCAACAAGGGCAGTCTTCCCGACGTCATACAGCACGGCAGGTCAGCAGGTATGCCTCTGTACGTCCGTTGTCCGATTTGCCAGAAGGAGTTCAAGCAAAAGTCCACCCTGCTGCAGCACGGCTGCATCCATATCGAGTCGAGACCTTACCCGTGCCCAGAGTGCGGGAAGAGGTTTAGACAGCAGAGCCATTTGACGCAACACCTGCGGATACACACCAACGAGAAGCCGTACGGATGCGTCTATTGCGGAAGGAATTTCAGGCAACGGACGATCCTCAACCAACATCTTCGAATCCACACTGGGGAGAAGCCTTACAAGTGCGGGCAGTGCGGTAAAGACTTCCGACAGAAAGCCATACTGGATCAACACACCAGGACGCATCAAGGTGACAGACCGTTCTGCTGCCCGATGCCCAATTGCAGGCGGAGGTTCGCTACAGAGCCGGAAGTCAAGAAGCACATCGACAACCACATGAATCCGCACGCGGCCAAAACCAGAAGGGACTCTGCGGACGGCAAGCTGCCCGGAAACGGAATGCTGCCCAGAGGCTTGACCCCGACCACTGTGGTCAAACCGGAGCTGTACTTCCCACAGTGCTACCCCAGCTTCAATCCGCCCACCAGCGTGGGGCAGTTCCAGTCGCCCACTCCCGATTTCAAGCCGCCCAACCCGTTGCCTGCCCAGTGA
Protein Sequence: MFYTRCPACLHQFVTLSRDLGLLGPTVPLGVEADTVPPRDQSLPSPAPSPYPATQAEPREDEIQQPEPNMDLEPRPASQCFSNELQQQQQQVGLQVYQQYARAPPPAAPPPVPPHLLGAGSFSALQYLKQPGGMLAGLGPDVSGQLDQYAGGMQELRAAALPDIIQQQQQQQQHAGLKKAGAGINGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGINPTLWPQDVPFPPDEGKEEVQSTYGDTDADRASCFSPNGLQYPAYFKDTKGMNHFGASTQFGALQYLKQQQPNKGSLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKTRRDSADGKLPGNGMLPRGLTPTTVVKPELYFPQCYPSFNPPTSVGQFQSPTPDFKPPNPLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330021;
90% Identity: -
80% Identity: -