Gpol015256.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755088.1:5965601-5988834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 1.7e+02 3.5 0.2 2 20 7 26 6 28 0.87 2 15 0.85 78 4.6 0.0 3 20 35 52 34 54 0.92 3 15 0.71 65 4.8 0.0 1 12 131 142 131 149 0.91 4 15 0.86 79 4.6 4.0 1 21 285 305 285 306 0.94 5 15 5.2e-06 0.00048 21.0 2.1 1 23 314 336 314 336 0.99 6 15 0.019 1.7 9.8 2.5 1 23 354 376 354 376 0.97 7 15 0.59 54 5.1 0.4 1 23 407 428 407 428 0.89 8 15 0.00014 0.013 16.4 3.0 1 23 434 456 434 456 0.97 9 15 7.3e-05 0.0066 17.4 0.1 1 21 462 482 462 483 0.94 10 15 3.5e-05 0.0032 18.4 2.2 1 23 490 512 490 512 0.97 11 15 9.8e-06 0.0009 20.1 3.4 1 23 518 540 518 540 0.98 12 15 0.00011 0.01 16.8 2.3 1 23 546 568 546 568 0.98 13 15 7.6e-07 7e-05 23.6 0.3 1 23 574 596 574 596 0.99 14 15 9.9e-06 0.0009 20.1 0.2 1 23 600 622 600 622 0.98 15 15 0.0037 0.34 12.0 0.2 1 23 630 653 630 653 0.96
Sequence Information
- Coding Sequence
- ATGAGCACCGTGGCTTTAAAGTGCCCCCTGTGCTGCGACGAACTTTTTCCAACCTACGAATTACtaaaatatcacattttggCGGTTGCCGAAAATATACTCTGTCCGGCTTGCGATAGGAGATTCGATAGTATCTTGGAGTTGGCTGATCATATAGGTAGCGAGTGCAGCGACAAAGATAGTGCCCCTGTTGATATGGACCCTTCAAAGAAGCAACCTGTGCAAGGCGATGCTGATTCTATGTATAGCATTGTGGAGACGCATCATTTAGAGGCAAACCCAGAAGTGGATCATTTAGAGGCAAACCCAGAAGTGGAGGAGGTTGTTGAGGAGCAAATGGATGAGAACAAAGCTGAAAGTGTGTTGTCTGATACGAATGGAGAATGTGCTTACATGTGTGAAATGTGTAATATGGAATTCACTAACATCGAAGAACATTTGGAGAAGTACCATGAAGGAGAAGATGTCATTGTGGAAAATGAAGATGATAAAAACCGAGAACTTCAAGAAGAAGAATTGCAGGAGaatgaaggagaagaagaaCTGCTACCACCCGAAGCAGAAGAAGAAAAGGAGACGGATAACTACGAGATAACGACGGGAAATCCCGATTCGCCCAACGAATTGGACATGGAAATGCCGTTCACGTCCGAGGAGGAAGTGTTGGCTGACGAAGTCGCTGGCGAGGTTGCGACGGAAAAGACGACAGGAAGGATAGACGAGTTTTGGGTGAACGAGCACTCTAATGAGATTCCCATCACCGAGTTTTATGTCATGGGGTTGGGGGGCATCGAGAAGATCAGCGAGGAGGCTGCTAGTAGGATAGAGGACAGGAATTCCGTCATCGAGATTCATCAGTGTCCGAGATGCTACCTGCAATTCCCGAAAATGGACCACTACGTGAAGCACTTATGCAATCCGGATAGGAACAATGACAACTTCAAGTGCGCCCATTGCAGCGCCGTCTTTCGCACCTACCAATCCCTAAACGCTCACATGCGCATGCACATACCCAAAGACGCCGATGCTAAGGAGAAGCGAATAGTGACGTTGGGCCCGCACATGTGCGAGGTGTGCAGCTCGATGTTCCCGTCGTTCAAGAGCATGAAGCTGCATCAGCGCATGCACGACCCGAAGGCCATAGCGGACAAGTGTCGCGGCGCCGTCACGCCCGAAGCCCTCGTCAAAGCGACGGCGACAGGCGTCACGCGGCAGATGTTCGTCTGCAACATATGCGCGATGACCTACGACAAGCAATACGAGGAGATACATATGAGGTCGCACAAAGGGGAGGAGAACTACAATTGCACGACGTGCAACCGCAAGTTCCACACGAAGGAGAATCTAGAGATGCACGCTCGTGCACACGCCAAGCCGAAGAAGTTCATCTGCAGCTACTGCAAGAAACCCTTTGCCACGAACGATGCTTTGCAGGAGCACGTCAACGACGAGTGCAAGGACAGAGACTACGCGTGCCAGTACTGCGGCCGTCGGTTCACGAGGCCGCACGAGCGGCTGAAGCACGAGCGCATCCACACCGGCGAGCGGCCGCACGTCTGCCAGATATGCGGCAAGGGCTTCCGCGTCAGCTACTGCCTGACGCTGCATCTGCGCACTCACACCGGCCACAGGCCGTACGAGTGCAAGCAGTGCGGCAAGCGATTCAAGGCGCAGGGCGTCTACAATCACCATCTGCTCACGCATTCCGACGTCAGGGCGTACAAGTGCCCTTATTGCCCGAAGGCGTTCAAGACGAGCGTCCAGCTGGCTGGTCACCGTAACAGCCACACGAAGCCGTTCACGTGCAAAGAGTGCAACCGGCCATTTGCTTCTCTCTACGCCGTCAGGGCGCATATGGAGACCCACAAGAGGGACAACAACCTGAAGTTCGACTGCTACGTTTGCGGCGCCACCTACGCTCGTGATTTCGCGTTGCGCGACCACCTGAAGAGCCAGCACCCCGAGGAGAACGACGACGCGGCGACGGCCGGCGACGTCGAGGTCGACGACACGGAGGAGGCGGTGGCGCAGATCGAGCAGGAGATGGACGCCGAGGACGCTTGA
- Protein Sequence
- MSTVALKCPLCCDELFPTYELLKYHILAVAENILCPACDRRFDSILELADHIGSECSDKDSAPVDMDPSKKQPVQGDADSMYSIVETHHLEANPEVDHLEANPEVEEVVEEQMDENKAESVLSDTNGECAYMCEMCNMEFTNIEEHLEKYHEGEDVIVENEDDKNRELQEEELQENEGEEELLPPEAEEEKETDNYEITTGNPDSPNELDMEMPFTSEEEVLADEVAGEVATEKTTGRIDEFWVNEHSNEIPITEFYVMGLGGIEKISEEAASRIEDRNSVIEIHQCPRCYLQFPKMDHYVKHLCNPDRNNDNFKCAHCSAVFRTYQSLNAHMRMHIPKDADAKEKRIVTLGPHMCEVCSSMFPSFKSMKLHQRMHDPKAIADKCRGAVTPEALVKATATGVTRQMFVCNICAMTYDKQYEEIHMRSHKGEENYNCTTCNRKFHTKENLEMHARAHAKPKKFICSYCKKPFATNDALQEHVNDECKDRDYACQYCGRRFTRPHERLKHERIHTGERPHVCQICGKGFRVSYCLTLHLRTHTGHRPYECKQCGKRFKAQGVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHRNSHTKPFTCKECNRPFASLYAVRAHMETHKRDNNLKFDCYVCGATYARDFALRDHLKSQHPEENDDAATAGDVEVDDTEEAVAQIEQEMDAEDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -