Gpol022943.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755092.1:11307205-11317954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0038 0.35 12.0 3.4 1 23 170 193 170 193 0.95 2 21 0.0058 0.54 11.4 1.1 1 21 302 322 302 323 0.95 3 21 9.2 8.4e+02 1.3 6.5 1 23 352 375 352 375 0.92 4 21 0.44 40 5.5 0.3 6 20 386 400 383 402 0.91 5 21 0.011 1 10.5 0.5 1 23 408 431 408 431 0.92 6 21 0.00017 0.015 16.3 1.1 2 23 497 518 497 518 0.98 7 21 0.15 14 7.0 0.1 1 23 536 558 536 558 0.88 8 21 0.0029 0.26 12.3 3.2 2 23 562 583 561 583 0.95 9 21 0.02 1.8 9.7 0.0 2 23 613 634 612 634 0.95 10 21 0.034 3.1 9.0 1.4 1 23 651 674 651 674 0.96 11 21 0.012 1.1 10.4 2.0 2 23 688 709 687 709 0.97 12 21 0.14 13 7.0 11.1 1 21 738 758 738 760 0.94 13 21 0.0091 0.83 10.8 0.1 2 23 776 798 776 798 0.91 14 21 0.00022 0.02 15.9 1.2 1 23 820 842 820 842 0.98 15 21 0.0022 0.21 12.7 1.4 2 23 857 879 856 879 0.92 16 21 0.00013 0.011 16.6 0.3 1 23 897 919 897 919 0.95 17 21 5.6 5.1e+02 2.0 0.0 1 23 956 979 956 979 0.92 18 21 0.0003 0.027 15.5 2.1 2 23 990 1011 990 1011 0.97 19 21 5e-05 0.0046 17.9 0.7 1 23 1047 1069 1047 1070 0.96 20 21 2.5e-05 0.0023 18.8 2.6 1 23 1078 1100 1078 1100 0.98 21 21 0.00036 0.033 15.2 0.1 1 23 1117 1140 1117 1140 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATCCGAGGGTTGGCAGTTTCCAATCTTGTTGCAGGCTATGTCTGTGCGAGACTTTGGATTCCTTGAAATCCATTTTCGATGGGAGTATAGAAGACCGGGCGCTCTCGCAGAAGATATCGCAGTTTCTAGCCGTCGAGATCAACGCTAGCGACAAGCTTTCGAAAATGATCTGCGAGCAGTGCTTGTCGATGGTCAACGGTTGGCACAACTTCAAGGACCAGTGTGAGCAAAACCAATGCAAACTTCAAGAGTGGCTGGCCAACAATTATCAAAACGTGTCTTCCGGtgatatctcagaaacgAGTTTTCAAATAAAAGAAGAACCAGCTGACGACATTGAGAACGACGACACAGAAAGCCGTACCGAAATGCTCCTGCAAGTAAAAAGGGAACCCGTTGAATCTAATGAGGTACTAATGGAAGAAGAATACAATGAATTGCCACCCTCTCTGTCACCAAATCCTATCGGTACAACTAATGGCGTAGTACCTGACAGTGATTATTGCTGTAGTTTGTGCTCGAAAATGTTTGTTAGTAAAGGAAATAAGAAGAGGCATGAACTGCGTGTACATGGACTACATAAAGCTGCGGCAAATGAACCAGCAGAACCCCTTACTAATGGAACCGCAAGTTCAACAGACGAAGACGCCTCCTCGACTTCCTCACCCGTAGATCAGCAAAAAATCCAGTTCGCAGCCGGATTGAAACTGTTGCAGAAAAACTCCACCCCGATATCCTGTGAGGCCTTATCCAAAATCGAGCTGAGCTACGCGGAAAAATGCAAAGCCATGGTCACCATGCACCAAACCTTGGTGTGTTCCTGCCACAACGTCCCGCACCAGAACCTGAAGGGTCTGCTTTCGCACCTGAGAGCCCTCCGCATCTGGTTCCCGGTGTTCACTTGCTACAACTGCATGATCACCTTCACGGACCGCTCCACGTTCACTCGACACATCCTCAGGTGCCCCTGCCAACCGCTCGACACCATCACCAAGCTGAGCAACTTGAGAAAACGCAGCGAAGTCAAGACCAGGCTTTACCAGAACTTCAAATGCACCTCCTGCAGGTTCATGTACAGCTTCCATGACACTTACTGCAAGCATGTCGACGAAGACCATGCGCTTCTGGAGCTACCTGTACACTGCCGTTGCGGCAGATCGTTCGACAATTTGGAAGACTACAAAGACCACGTGTACGTCAGCTGCTTGGTGGAATACTACTGCGATATTTGCTTCATAACCACCAAGACTTTGGACGAATTCCAGAAGCACGCTTCCGAGGTTCACGACCAATCCGAAGGCTTTATCCTTCTTCAAGACGATAATTACAAAGTGAGGAAGCCTTCGATGCATTTGGGCGCCAAAGAAGAAGCTGATGGACTGGAGAAACGGGAGAAAAGATCTGCCAACTTTGTAAAGGAGGAGATTGATAGTACCCCTAGAAGGGTTCCTAACCCAGTGCATCCTACCTCCGACACTAGGAAGTGTCCGGTATGCAGCAAGGAATATTCCTCGTATAAGAATATGATGCGCCACTACAAAATACACACAAGCGAGCTCAAGTTGAACGATTTCAACGAGGAGAAGGAAGAATCCTTTTACTCGTGCCCAGATTGCGGAGGGATGTACAATTCAGTCGAATGGCAACAACATTTGACGGACAAGCACGAGATCAAGACGTGCGAGGAGTGTGGAAAGTGCTTCCAGTTCAAAACGGAGTACGAGCAGCACAGGAGCGCTcatttgaatctcaaattgtACAGGGACTCGAAAACGCAGGCTTATCGGAGCGCCATGATGAGCCCTGCCTCGGATGAAGAGGCATCCCTGACTTGTCGAATTTGCGAGATAGTATTAGCTAACAAAGAGGAATTGCTGGCTCACCAATCGGAACATGAGGGCGAAAACATGGACTTGGACGTCGAAGAGGAAAAGCCGAAAATGTTCCATTGTGATGCCTGTTTCAAGGATTTCGCAACATACTCCGGTCTGTGGGAACACAACAGGAAATTGCATCCCGAGAAGAAGACTCCCTCAGGCAACGCATATCCGAAGCAGTGTTCGCAGTGCGATAAAGTATGCACTACCGGGGCTGCTTACTTCAGACATAAGCTCATCCACGAGAAGGATATCCCTGCTGACGCTAGCTTCAATAAAATGTCTGTGAAGGCGAAGAAGCCAAATGCCATCGACGGAGAGTCCTACCACACCTGCAAGAAATGCTTCAAAGTATTCTCCTCCAAGTACAATTTGAAATGTCACATGAAATGCCACGGCATCAATTTGAGCCCGACTGGTAAGAAGAGCCCGAGGAAGCCGTACTGTAACATTTGCCAGAGAGTGTTCAATTCGGCCACGGAAGTGTCTGATCACCAAGAAGCTGAGCACAAGATGGAAGAAATGCCGCTGCTGGACAACGAATTGGAGATGAAGGTCGAAGGGCCCGTCATTTTCACCTGCGATGTGTGCGTGTTGACATTCACATCTAGAATATctctgaaaaagcacaaagaaACCCATGCCCAAGAAGGCAAGAAGTCATCTCGCATCCAATCGCAGCTGAGCTGCAAATACTGCAAGGTTACTTTCGATTCGATTGTCACACTAACCAGGCACATGCACGACGAACACGACGAAGGCGCCAAGCCTAAATTGGGTAAAATGAAAGACAGCTCCCAAGGATTCTCCTGCGATTTATGCAAGAAGACTTTCCAAACCGCGAGCGCGCTGAGCACGCATATTGGCTGGCACAAACGCGATCCCTCCTCGGGCAGCGTGAAGGTAATGAAGAACCAGAAGATCATCACGAAGCTGGCCAACAGCGTGTGCGTGAAGCAAGAAGTAATCGAGATGCCCAACTTCCAGTGCGCCACGTGCTTGGTGGAGCTGCCCAACGACACTGCCTTGCAAGTCCACATTCTGGAGAAGCACCGGAGCGTGAGCGCTATAATGTTGATCCCGCGCTGCAACACTTGCAACAAGGATTTCAACACTCAGGATGAGTACGAGACTCATAAGAGACTGCACGATTTTCTCGAAAGACAGAAGCAGCACGACCAGAAGATGTTTCAACAGCAAGTACCAGAACAACCACTGATACCGGTCTCGCCTCCACAGAAGTCCGGCAAGAACTATCCGTGCAAGTACTGCAACGCCGGATTCAGCAGATCGGACACGCTGGGCGCCCACGTGCGTCAACACCACAAGGAGTTTGTTGTCACGGAGTTCAAGTGTCACCAGTGCGACAGGGTGTTCGACAAGCAAAACTCTCTGTCCATTCATCTGAAAGTGCACGAGAAACAGCGAGCTGTGCCGATGCAGATCGCTACAGGGAAGCCTCTGTTCTCTTGCTCTATTTGCAATATGGGTTTCAACTTACCAAAGGATCTGAGGGCGCACACTATAACTGCTCACCCTTTCTGA
- Protein Sequence
- MEDPRVGSFQSCCRLCLCETLDSLKSIFDGSIEDRALSQKISQFLAVEINASDKLSKMICEQCLSMVNGWHNFKDQCEQNQCKLQEWLANNYQNVSSGDISETSFQIKEEPADDIENDDTESRTEMLLQVKREPVESNEVLMEEEYNELPPSLSPNPIGTTNGVVPDSDYCCSLCSKMFVSKGNKKRHELRVHGLHKAAANEPAEPLTNGTASSTDEDASSTSSPVDQQKIQFAAGLKLLQKNSTPISCEALSKIELSYAEKCKAMVTMHQTLVCSCHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHILRCPCQPLDTITKLSNLRKRSEVKTRLYQNFKCTSCRFMYSFHDTYCKHVDEDHALLELPVHCRCGRSFDNLEDYKDHVYVSCLVEYYCDICFITTKTLDEFQKHASEVHDQSEGFILLQDDNYKVRKPSMHLGAKEEADGLEKREKRSANFVKEEIDSTPRRVPNPVHPTSDTRKCPVCSKEYSSYKNMMRHYKIHTSELKLNDFNEEKEESFYSCPDCGGMYNSVEWQQHLTDKHEIKTCEECGKCFQFKTEYEQHRSAHLNLKLYRDSKTQAYRSAMMSPASDEEASLTCRICEIVLANKEELLAHQSEHEGENMDLDVEEEKPKMFHCDACFKDFATYSGLWEHNRKLHPEKKTPSGNAYPKQCSQCDKVCTTGAAYFRHKLIHEKDIPADASFNKMSVKAKKPNAIDGESYHTCKKCFKVFSSKYNLKCHMKCHGINLSPTGKKSPRKPYCNICQRVFNSATEVSDHQEAEHKMEEMPLLDNELEMKVEGPVIFTCDVCVLTFTSRISLKKHKETHAQEGKKSSRIQSQLSCKYCKVTFDSIVTLTRHMHDEHDEGAKPKLGKMKDSSQGFSCDLCKKTFQTASALSTHIGWHKRDPSSGSVKVMKNQKIITKLANSVCVKQEVIEMPNFQCATCLVELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFNTQDEYETHKRLHDFLERQKQHDQKMFQQQVPEQPLIPVSPPQKSGKNYPCKYCNAGFSRSDTLGAHVRQHHKEFVVTEFKCHQCDRVFDKQNSLSIHLKVHEKQRAVPMQIATGKPLFSCSICNMGFNLPKDLRAHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -