Gpol010841.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755085.1:23405108-23412526[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.0021 19.0 0.2 1 23 19 41 19 41 0.97 2 13 0.00011 0.01 16.8 1.9 1 23 47 69 47 69 0.99 3 13 5.9e-05 0.0054 17.7 0.5 1 23 75 97 75 97 0.97 4 13 6.5e-07 6e-05 23.8 1.0 1 23 107 130 107 130 0.94 5 13 2.4e-06 0.00022 22.0 0.7 1 23 136 158 136 158 0.98 6 13 4.8e-06 0.00044 21.1 0.3 1 23 164 186 164 186 0.98 7 13 0.00027 0.025 15.6 0.2 1 23 197 219 197 219 0.97 8 13 0.0029 0.27 12.3 6.7 1 23 225 247 225 247 0.97 9 13 2.2 2e+02 3.3 0.3 1 13 253 265 253 268 0.86 10 13 0.00011 0.01 16.8 0.1 1 23 297 320 297 320 0.95 11 13 6.3e-05 0.0058 17.6 1.7 1 23 335 358 335 358 0.93 12 13 0.02 1.8 9.7 0.3 2 17 396 411 396 412 0.93 13 13 0.76 70 4.7 0.4 5 19 444 458 444 461 0.85
Sequence Information
- Coding Sequence
- ATGACTGAAGAACACCTAGAAGTAAACACTACTGACAAGCCATCGGACAAATCATTTGAATGTGATGTTTGCCAAAAAACATTCCCCACCAAATATCGTCTGGCAGCTCATGTCGATAGCCATAGCGTGGTAAAACCATTTAAATGTGACACCTGCGACAAATTTTACCGCACCAAATACATTCTGGCTGTACACCTCAAAACCCATGGCTCTGAAAAACCATTCAAATGTGACATTTGCGACAAATCTTTCCCCATCGACAGGTATCTCCAACGACACCGTGTTGTCCATCTTGTCGAACAACCCCATGAAAGACCCTTCCAGTGCAAAATTTGCGGCAAGAGCTTTACTAGGAAGGGAACCCTCCGCGGACATAACCTCAGGGTGCATCCTGTAGGTGAGCTCTTTCAATGCAACGTGTGTGGAAAGAAACTCAAAAGCAAGGAATACTTGGTGAGACACCAAATCATCCACATGGAAGAGAAGCCCTACAAGTGTGAgGTATGCGGGAAGAGATTCAATCAGATGGGGTCCCTGCTGACGCACAGGGCCGTGCATCTGCCGAAACAGATCGACGACGATCGGCGATTCGAGTGTCTGATTTGCGATAAACAGTTTCCGGGCCAGCCGCAATTGACGATGCACAATAGGCTGCATACGGGAGAGAAGCTCTACGAGTGCGTGGTGTGCCACACGAAGTTCCGCACGAGGCACTGTCTGAATGTGCACGTCAAGGAGCACGCCAAAGAGAATCTGTTCGAGTGTTTCGTCTGCGGCTCCGTGTTCCAAAGTAAGCCGGATGTGGCGGAATGCGGAGTGTGCAGAACCTCGTTCGGCGCCACGAAGTACTCCCTGCGCCACGTGCGAGTGCAGCCTGGCGACAAACCCTTCCCGTGCCCGCTCTGCGATAAGGCGTTCAGAGTGGTGGGTGAGATGACGCGGCATCGGAACGAGGTGCACGAGGGGATCAAGAACCACCGACGGAAAAGTTCCACTGGGCCCTACAAGTGCAGCGAGTGCCCCAAAATTTTCACCACTAGGAGTTCGATGATGTACCATAAGGGTAGGAGGCATTTGGATGCCAAAAAAGTCGTTGTTGGGAACGGGGAAAATGTTGAGCAGGATTGCAGCGATCTTATTTGCAAATATATTATCACAACAAAGCCTGAAAAACCACCGTTGGAAAAGTGCAGCGAGTGCCCCAAAACTCTCACCACCAGGAGTTCGCTGATGTACGATAAGGGTAGGCACTGTGATGCCAAAAAAGTGGTTGTTGGGAACGGGGGTGAAGATCACAGCCTTCTCTTTCTCCCTAGCTATGGGCGTATCGAGTGCTTCAAAACGTTCACCAGGAGGACTTCCCTGATGTGCCACGTGGCAAGGCGCGTGGGTGCCAAGAGGATGGTTGTTGAGAATGTGGAGGTGGACCATGAAGAGATTATTTTCTTGGATTCGACAGTATGA
- Protein Sequence
- MTEEHLEVNTTDKPSDKSFECDVCQKTFPTKYRLAAHVDSHSVVKPFKCDTCDKFYRTKYILAVHLKTHGSEKPFKCDICDKSFPIDRYLQRHRVVHLVEQPHERPFQCKICGKSFTRKGTLRGHNLRVHPVGELFQCNVCGKKLKSKEYLVRHQIIHMEEKPYKCEVCGKRFNQMGSLLTHRAVHLPKQIDDDRRFECLICDKQFPGQPQLTMHNRLHTGEKLYECVVCHTKFRTRHCLNVHVKEHAKENLFECFVCGSVFQSKPDVAECGVCRTSFGATKYSLRHVRVQPGDKPFPCPLCDKAFRVVGEMTRHRNEVHEGIKNHRRKSSTGPYKCSECPKIFTTRSSMMYHKGRRHLDAKKVVVGNGENVEQDCSDLICKYIITTKPEKPPLEKCSECPKTLTTRSSLMYDKGRHCDAKKVVVGNGGEDHSLLFLPSYGRIECFKTFTRRTSLMCHVARRVGAKRMVVENVEVDHEEIIFLDSTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -