Gpol011070.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755085.1:27716865-27718013[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00042 0.039 15.0 3.8 1 23 89 111 84 111 0.99 2 10 1.2e-05 0.0011 19.8 1.3 1 23 117 139 117 139 0.98 3 10 7.4e-06 0.00068 20.5 5.6 1 23 144 166 144 166 0.99 4 10 0.00054 0.049 14.6 0.2 3 23 174 195 173 195 0.96 5 10 4.8e-05 0.0044 17.9 1.0 2 23 201 222 200 222 0.96 6 10 0.00011 0.0098 16.8 1.4 1 23 232 254 232 254 0.97 7 10 1.1e-06 9.8e-05 23.1 0.3 1 23 260 282 260 282 0.98 8 10 8.3e-07 7.6e-05 23.5 0.6 1 23 288 310 288 310 0.98 9 10 2.3e-07 2.1e-05 25.3 1.5 1 23 316 338 316 338 0.97 10 10 5e-05 0.0046 17.9 3.1 5 23 347 365 344 365 0.95
Sequence Information
- Coding Sequence
- ATGGAAGCTTCCGTAGTTGATCAACTGAATGATTCAGACGAACTCATGAATCTCCTATCAACTGAAGAAAACTGTACGGCTATCCTGCAAAACATATCGACCAACGAACAGTTCCAACGACTGATGAATGAAGAATCGGAATTCGTGCCGACCGAAGAAATCGAGCAGCTGATTAACAAGACATGTGAAGCAACAGGGCTTTCAATGGACACCCCAGACTCAGCAGCCGTGAGAGGCGACAGCGAACATACATgtagaaaatcattcaaatgcgATTTATGCAATAGCATGTCATCAACGAAGAAACTCCTCAAGAAACATATGCTGATCCACACTAAAACCCGAGAATTTCCTTGCGAGACCTGCGGCAAACTCTTCAGGCATAGGTACGAGGTGACAGCCCATGCCAGAACCCACAGCAAACCCACTTACCAATGCGAGATGTGCTCGCAAATGTTCGTGCACAAATCGCACTTGAACGCGCATAGGAAAAAGCATCTGGGCCAGTACGTAGCGTTCTGCGACATCTGCCGAACTAGTTTCATATCCGCAGCTGACTTTAAAGCTCACAAGAACGTTGTGCACGACAAGGTGAGGCTGATTTGTGACCATTGCGGCGCCAAATTGAGTACCTCATCGGCGCTGACGAAGCACAAGCTGACGCACGACCCCAGCTACGGCACAGACAGGTCTCACGTGTGCGACGTCTGCGGCAAGAGCTACCTCAACGCGAGGAACCTGAAGAGCCACAAGAAGATCCATTCGAACATCAAAACCTTCGTGTGCAGCATCTGCGGCAAGTCCGTCAGCAGCAAGAACAGTCTCGAGACGCATGTTAAGATGCATACGGGCGTCAAAGACTTCAACTGCGAGGTGTGTGACAAGAACTTTGCGTCCAAAGAGTACCTCGTTCTGCATCAGAGGACTCACAATGGGGAGAAGCCGTTCGAGTGCACCGTTTGTGGGAAACGATTCACGCAGAAGACTTCGCTGACGGTGCACGTTAGGTTCCATACAGGGCAAAGACCGTATAAGTGTGAATGTGGGAAACAATTCGCGACGAAGAGTCATTTAATGAGTCATTATAAGACGCACGATATTGGTGGGGTTGATATAGAGTATATAACCAATTTGTctgaaatcaaatga
- Protein Sequence
- MEASVVDQLNDSDELMNLLSTEENCTAILQNISTNEQFQRLMNEESEFVPTEEIEQLINKTCEATGLSMDTPDSAAVRGDSEHTCRKSFKCDLCNSMSSTKKLLKKHMLIHTKTREFPCETCGKLFRHRYEVTAHARTHSKPTYQCEMCSQMFVHKSHLNAHRKKHLGQYVAFCDICRTSFISAADFKAHKNVVHDKVRLICDHCGAKLSTSSALTKHKLTHDPSYGTDRSHVCDVCGKSYLNARNLKSHKKIHSNIKTFVCSICGKSVSSKNSLETHVKMHTGVKDFNCEVCDKNFASKEYLVLHQRTHNGEKPFECTVCGKRFTQKTSLTVHVRFHTGQRPYKCECGKQFATKSHLMSHYKTHDIGGVDIEYITNLSEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330937;
- 90% Identity
- -
- 80% Identity
- -