Gpol003727.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755083.1:389802-391566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.004 0.36 11.9 6.8 1 23 96 119 96 119 0.96 2 15 5.4e-05 0.0049 17.8 0.9 2 19 130 147 130 150 0.94 3 15 0.074 6.8 7.9 1.8 1 21 165 185 165 186 0.91 4 15 8e-05 0.0073 17.2 1.4 1 21 196 216 196 217 0.96 5 15 3.4e-05 0.0031 18.4 1.9 1 23 228 251 228 251 0.97 6 15 0.084 7.7 7.7 2.4 2 21 257 276 256 279 0.94 7 15 0.0057 0.52 11.4 1.1 1 23 289 312 289 312 0.95 8 15 1.6e-05 0.0015 19.4 2.4 1 23 322 344 322 344 0.98 9 15 8.6e-05 0.0079 17.1 0.5 3 23 352 372 351 372 0.94 10 15 0.0024 0.22 12.6 2.1 1 17 378 394 378 401 0.91 11 15 1.3e-06 0.00012 22.9 3.0 1 23 409 431 409 431 0.98 12 15 3.4e-05 0.0031 18.4 3.9 1 23 437 459 437 459 0.97 13 15 8.9e-05 0.0081 17.1 1.6 1 23 465 488 465 488 0.97 14 15 0.00031 0.028 15.4 4.9 1 23 502 524 502 524 0.96 15 15 1.5e-05 0.0013 19.6 4.1 1 23 530 553 530 553 0.96
Sequence Information
- Coding Sequence
- atgattcctgAGAAATGCTCACTTTGTTTTAATACGGCTGACGCTAAATTGGAAGATGTTGATGACAACAATATAAAATGGTCAATGAAACTGCAGTATGTTGTACCAGAAGTGgAATGGAAGGAATATAACTCAATTTGTGGAACTTGcatcaatgatttgaaaatttgttgtgCATTCAGAGATCTCTGCTTGAACTTGTTGAAACCCAAAAACGTTGTAGAAGATTGtgataatgatgtatttttggTACCTGAACCTATTGAAGACGATGAAAAAGAAAGTTTCATATGTTTTCATTGTAACAAAAGTTTCCATGATAGAGATTTTTTGTGCGAACATATTGAAAGGGAGCATAATAACAGTTCCAAGTATGAAAGGAACGAGAAGTGTCCACACTGTAAAAGAAAATTCGCGAATAGTTCTTCTCTAAAAGAGCATGCCATTCAGTGTGATGGGGTGAGAAGACATACACGAAATGGTAAAAAGGAACATGAATGTGAAAAATGCAAACGGAATTATTCAACGAAGAACATATTGAGACAGCACGAAAAAAATTGTACTGCAGAAGTTATGGATGCGAGATTTCAGTGTATGGAATGCAAAATATCATACAAAACTAGTAAATCCCTACAAAAGCATCAAAAACTTTGTTGCCAGAAAGAAGTTGAGAATATTCCGTATTTTTGTGAAGattgtgatgaatttttcaagtcaCATGGTGATCTCACTTCACATGTGAAGAAAGAACACCCAGGACGTATCATTCAATGTACCTCTTGCAACGAATCCTTCATTTCTGATGAAGATTACACGAGTCATAGGAGATGCAAGCACAAGGAAAGCAGGTGTAAAGAAAGAAGTTACATTTGTGATATTTGCAATGAGGAATTCAGATTTGTTAAACATATCATCAAACACTACAGTAGTATCCACTCTATCGAAGAAAAGCTAGTGAAACCTTATAGTTGCGATATTTGCAGTAAAAGGTTCAGAGCTTCGACAAATCTCAATAACCACAAACGCTACCATGAAAAAACCCGAATGAATATATGCAGTATGTGTGGCAATAGTTTCAAAACTAAAGGAGATCTAATGCGACACGAAACGCTACatttgaatgaaagaaattataAATGTGACAAATGCGAGAAAGCATTCAAAACAATGGATAATCTACGCTTCCATTGTCTGATAGTCCATACTGACCAGTCCGCTTGGAAGTTCGTTTGTCATGAATGTGGAAAAAGATTCCCTCAGAAATCGGGCTATGAGCAGCACAGAAAAAGGCATATGGGAGAAAAAACTTTCAAGTGCACACGCTGCGAGAAAGCTTTCATCACAAATAATGAACTTCAAAAGCATATGTTCCATCATTCGAATAACATGAAATACACATGCAATCAATGTGGCAAagaaataaaacacaaaaaGAGTCTCGAGGTGCATTTGGCAAGAACACATGGTATAGGCAGTGCCAAAATACCTGTGAGAGAAAGGAAACATGCTTGCGAACTTTGCCATGCCAAATTTTGCGATAAATCGAAACTAGCTAGGCACGTTCGCATACACACTGGAATTAAGccgttttcttgttttgtttgcAACAAGAAATTCAATGATAAGTCCTATCTGAAGCAACATCTCAAGAACTTCCATCAGATTACTGAAGAACTGAATGATAACTTATGA
- Protein Sequence
- MIPEKCSLCFNTADAKLEDVDDNNIKWSMKLQYVVPEVEWKEYNSICGTCINDLKICCAFRDLCLNLLKPKNVVEDCDNDVFLVPEPIEDDEKESFICFHCNKSFHDRDFLCEHIEREHNNSSKYERNEKCPHCKRKFANSSSLKEHAIQCDGVRRHTRNGKKEHECEKCKRNYSTKNILRQHEKNCTAEVMDARFQCMECKISYKTSKSLQKHQKLCCQKEVENIPYFCEDCDEFFKSHGDLTSHVKKEHPGRIIQCTSCNESFISDEDYTSHRRCKHKESRCKERSYICDICNEEFRFVKHIIKHYSSIHSIEEKLVKPYSCDICSKRFRASTNLNNHKRYHEKTRMNICSMCGNSFKTKGDLMRHETLHLNERNYKCDKCEKAFKTMDNLRFHCLIVHTDQSAWKFVCHECGKRFPQKSGYEQHRKRHMGEKTFKCTRCEKAFITNNELQKHMFHHSNNMKYTCNQCGKEIKHKKSLEVHLARTHGIGSAKIPVRERKHACELCHAKFCDKSKLARHVRIHTGIKPFSCFVCNKKFNDKSYLKQHLKNFHQITEELNDNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -