Gpol023566.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755093.1:2530115-2531527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.038 3.5 8.8 2.6 2 23 6 27 5 27 0.97 2 14 6.5e-05 0.006 17.5 3.6 1 23 33 55 33 55 0.98 3 14 2.2e-05 0.002 19.0 1.2 1 23 61 83 61 83 0.98 4 14 1.1e-06 9.9e-05 23.1 0.9 1 23 89 111 89 111 0.98 5 14 0.06 5.5 8.2 4.5 1 23 116 138 116 138 0.98 6 14 5.9e-05 0.0054 17.7 5.8 1 23 144 166 144 166 0.97 7 14 7e-05 0.0064 17.4 0.5 1 23 172 194 172 194 0.98 8 14 3e-05 0.0027 18.6 4.0 1 23 200 222 200 222 0.99 9 14 1e-05 0.00093 20.1 1.1 2 23 228 249 227 249 0.97 10 14 8.7e-05 0.008 17.1 1.8 1 23 255 277 255 277 0.98 11 14 0.0017 0.16 13.1 6.0 1 23 282 304 282 304 0.98 12 14 0.00012 0.011 16.7 2.3 1 23 310 332 310 332 0.98 13 14 3.6e-05 0.0033 18.3 3.9 1 23 338 360 338 360 0.98 14 14 5.5e-06 0.00051 20.9 0.2 2 23 367 388 366 388 0.97
Sequence Information
- Coding Sequence
- ATGGAAAACCCACTGGAATGTAAAATTTGTCTGAAAAAGTTATCATGTCAAAGGAGTTTGGCACAACACCTGAGAACCCATACAAGCGAAAAACCATACGAATGTGACCAATGTCAAAAGAGGTTCGCACTCAGACATCATTTGAATGCACACCAGACTGTACACACTGGCGAAAAAATGTTCCAGTGTAACATTTGTTTGAAGAAGTTATCTAGTCAACAGAACCTAATGCAACACCTAAGACTCCACACCGGCGAAAAACCATTCAAATGCGACATTTGTCTCAAGACATTTTCGCGAGAGAGTTATTTGGCGCAGCATATTAAATTACATGCTGAAGGAAAATTCCAATGTGACATTTGTCATATAGAATTCACTTGTAGAAGTATCTTGAAACAACATCTGAAAATGCATACAGGCAAAAAAACATTCGATTGCGACCAGTGTCAAAAGAGGTTCGCTCACAGGCATCATTTGAAGGCACATCAAGCTGTACACACTGGCGAGAAACCTTTCGAGTGTAACATTTGTCTGAAAAAGTTATCGAGTCAACAGAGTTTGGTGCAACACCTAAGGATCCACACCGGCGAGAGACCATTCAAATGTGACATTTGTCTGAGAACATTCTCGCGAGAGAATAATTTTGCACGACATCATAAAATGCACGCTAAAGGACACTCCGTTTGTAACATTTGTCATAGGAATTTCACTAGTGAAAATGCCTTGGCACAACATATAAAAACACACACCGACGAAAAGCCGTTCGAGTGTGACATATGTCAAAAAAAGTTCACTATCAAGAGTGTTCTGGTACGACACCATTTGATGCACACTGGCACACCcttcgaatgtgacatttgcCATAGAAAATTCACTTGTCAAAGTGTTTTGACACAACATCTCAGAAAACACACTGGCGAAAAACCgttcgaatgtgacatttgtcgaAAGAGGTTCACCCTCAAGAGTGTTCTGGTACGACACCACTTGATGCACACTGGCGAAACACATTTCGAATGTGACAATTGCCAAAGAAAATTCACTAGCAAAAGTGTTTTGATGCATCATCTTAAATCACACTCTAAAGAAAACCCGTTAGAGTGTGACATTTGTCTGAAGATATTCGCTACTAAAAGTTCTCTAGCACGACACTATAAAGTGCACAGTAGTGAGGACTGTGAGGATTATTCTAATACTAGTAACTCTGATTTACGACAGGAAGTACTTGTTGAAGAAGATTTCAGCAGTATTAACTCTaaaatcaaaactgaaatttccacaaatgATGGCGAAATGGAATACAAAGAAGAAATAGAAGACTCACAGCAAAGGGGATTggtagaatatcatgaaattatatttgacaAACAAGAACAATTCGTTAAAATTGAGAAACAAGATATCGATTATTGA
- Protein Sequence
- MENPLECKICLKKLSCQRSLAQHLRTHTSEKPYECDQCQKRFALRHHLNAHQTVHTGEKMFQCNICLKKLSSQQNLMQHLRLHTGEKPFKCDICLKTFSRESYLAQHIKLHAEGKFQCDICHIEFTCRSILKQHLKMHTGKKTFDCDQCQKRFAHRHHLKAHQAVHTGEKPFECNICLKKLSSQQSLVQHLRIHTGERPFKCDICLRTFSRENNFARHHKMHAKGHSVCNICHRNFTSENALAQHIKTHTDEKPFECDICQKKFTIKSVLVRHHLMHTGTPFECDICHRKFTCQSVLTQHLRKHTGEKPFECDICRKRFTLKSVLVRHHLMHTGETHFECDNCQRKFTSKSVLMHHLKSHSKENPLECDICLKIFATKSSLARHYKVHSSEDCEDYSNTSNSDLRQEVLVEEDFSSINSKIKTEISTNDGEMEYKEEIEDSQQRGLVEYHEIIFDKQEQFVKIEKQDIDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -