Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: Znf335
Assembly: GCA_963576655.1
Location: OY755087.1:6660649-6667379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.7e-05 0.0062 17.5 0.5 1 23 104 126 104 126 0.98

2 16 0.27 25 6.1 0.4 2 23 132 153 132 153 0.96

3 16 0.0052 0.48 11.5 7.9 1 21 159 179 159 181 0.94

4 16 1.8e-07 1.7e-05 25.6 1.1 1 23 187 209 187 209 0.98

5 16 0.0015 0.14 13.2 2.1 1 23 216 238 216 238 0.97

6 16 0.011 1.1 10.5 2.5 2 23 245 266 244 266 0.95

7 16 0.066 6 8.1 0.3 1 23 271 294 271 294 0.97

8 16 8e-05 0.0073 17.2 0.6 2 23 298 319 298 319 0.97

9 16 7.5e-05 0.0068 17.3 0.9 2 23 326 348 325 348 0.96

10 16 2.4e-05 0.0022 18.9 0.8 2 23 356 377 355 377 0.98

11 16 1.2e-07 1.1e-05 26.2 1.5 1 23 381 403 381 403 0.98

12 16 4.9e-08 4.5e-06 27.4 2.6 1 23 409 431 409 431 0.97

13 16 0.002 0.19 12.8 3.1 1 23 437 459 437 459 0.96

14 16 0.00067 0.061 14.3 2.3 1 23 465 487 465 487 0.98

15 16 4.3e-05 0.0039 18.1 6.6 1 23 493 517 493 517 0.92

16 16 8.5 7.7e+02 1.4 2.1 1 23 524 547 524 548 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.7e-05	0.0062	17.5	0.5	1	23	104	126	104	126	0.98
2	16	0.27	25	6.1	0.4	2	23	132	153	132	153	0.96
3	16	0.0052	0.48	11.5	7.9	1	21	159	179	159	181	0.94
4	16	1.8e-07	1.7e-05	25.6	1.1	1	23	187	209	187	209	0.98
5	16	0.0015	0.14	13.2	2.1	1	23	216	238	216	238	0.97
6	16	0.011	1.1	10.5	2.5	2	23	245	266	244	266	0.95
7	16	0.066	6	8.1	0.3	1	23	271	294	271	294	0.97
8	16	8e-05	0.0073	17.2	0.6	2	23	298	319	298	319	0.97
9	16	7.5e-05	0.0068	17.3	0.9	2	23	326	348	325	348	0.96
10	16	2.4e-05	0.0022	18.9	0.8	2	23	356	377	355	377	0.98
11	16	1.2e-07	1.1e-05	26.2	1.5	1	23	381	403	381	403	0.98
12	16	4.9e-08	4.5e-06	27.4	2.6	1	23	409	431	409	431	0.97
13	16	0.002	0.19	12.8	3.1	1	23	437	459	437	459	0.96
14	16	0.00067	0.061	14.3	2.3	1	23	465	487	465	487	0.98
15	16	4.3e-05	0.0039	18.1	6.6	1	23	493	517	493	517	0.92
16	16	8.5	7.7e+02	1.4	2.1	1	23	524	547	524	548	0.90

Sequence Information

Coding Sequence: AtggatattcaaattattaggaatttgaaaaatgttggtAGTGTAGCAGAGACTGCTACTTCCAGTGTACGTGACCCCAATAATAAAATACCAACCCTTCAGTCATTCAAAATTCcagaacattcattattattagtgaACACTTGTACTGTCAAACAAGAAGATACTTCCACTATTATGGATGAAGGTAATCACGCCATGGATGAAGTGAATACAATGGAAAGCATTTACCAGCAGAATCTTCTGGACCATAGCaatctgaataaaaatatcaaattggaGAGTAGTTCCAGTTTGAATTCTACAGATTATAAATGTGAGATTTGTGAAGAAGTTTTCATCAGATATCCTGATTTCAAAGCACATAAGAAGAACCATTATTTAGAAAAGAGGAAGTGCCAAATTTGCAACCTCACTCTACAAAGTATTGGAAAACTACAAGAACATGTGTACAAACATATGGGGATGAAACCATTCAGCTgcgatgaatgtggaaaatgttttgtATCTAAGAATCATGTGAAATTGCATAAGAGGTGTCATAATAAAGATAAGACTTTCCAATGTACTAAATGTGATAAGGCATTCAGAAACAGCGGGTCCTTGAGAAGTCATCAACTTGTTCATGCTGAGAAAGTTCAGGAGTTCATCTGCAAGGTGTGTAATATGGATTGCAAAAATCTTCCTGATTTCCGAAAACACATGAACGAACATGGAAAGAAGTCTGAAATAAAATGTGGTGTATGTGGAAAATCTTTCAATAGCGATCGTGGTTTAGAATGCCACTTGCATACCCATAAGGATCTGAAGTTTCCCTGTGAATTCTGTGGTAATATTTACCCTTCAATGTATCGTGTTAAAAGACATGTTAAAAGGGCTCATATTCTCAATCGCTGTGAAGAATGTAATGAGGTTTTCTATGACAGGGCTCAATACACAAAACATGTAAAGAACCACAACATGGATAAACCAATCGAATGTAAAGTTTGCCAAAAGAAGTTTGataagttgaaaaatttgtccGAACATATAAGGCTCCAACATAAGCAAGATAAAGAAATGCAGAAATGCCATATTTGTGCTAAAGAATTTCCGAATGCTGCactattgaaaaatcatgtgAAAACTCATGATAAAAGTTTCAAATGTCCAGACTGTGATAAAGTATTCTCATCCAGGTTCAATCTAAAAACTCATTCCATCACTCATTCCGGAGAAAGAAATCATAAATGTGATATATGTGACAAAAGTTTCACCACCAAAAGCAGTTTGAAAAATCACCAAGCAGTGCATAGTGATGAAAGGCTGTTTCAGTGTGAACAATGTGCCAAAACATTCAAAACTAACCGTAGACTATACGCTCATAAATTTTCTCATGCTACCGAAGAGAAGTTCGAATGTGAGATTTGTTTGCAGAAGTTTCGAGTGAAGCAGTACCTCAAGTATCATATGACCAAACATTCCACGTTGAAGCCATTCCAATGCACCATTTGTAGAAAACGCTTCAAACATAAGAAATCGTTTGAGAAACACATGAATTCCAACAAGCATAAGATTCGTGAAGATGAGCATGACTGTGATTTTTGTGATGACACTTTCCTTACCAGAGATTTACTCCTCGATCATTTCGCCAAGGTCCATCATGAGGAGAATGTAATAAACAGTATGAAAGACTGTGGAGAGGTAGATGGAGATGTGATCAACGgcttcgaaaattttgaagatggAGTTGATAGTGAGGGGGGCAACATTGAAGATGGTGAAAAGTCTGATGAAGATGTAAaagtcaatttcaataaaagcaGTAATAGCATTGAGATCAATGACAGTTTGAAAGAAGAACTAGACAATGACACTCTTGAATTGAGGAATAAGGTGAAAATggagaataatgataataattatattatggaATGA
Protein Sequence: MDIQIIRNLKNVGSVAETATSSVRDPNNKIPTLQSFKIPEHSLLLVNTCTVKQEDTSTIMDEGNHAMDEVNTMESIYQQNLLDHSNLNKNIKLESSSSLNSTDYKCEICEEVFIRYPDFKAHKKNHYLEKRKCQICNLTLQSIGKLQEHVYKHMGMKPFSCDECGKCFVSKNHVKLHKRCHNKDKTFQCTKCDKAFRNSGSLRSHQLVHAEKVQEFICKVCNMDCKNLPDFRKHMNEHGKKSEIKCGVCGKSFNSDRGLECHLHTHKDLKFPCEFCGNIYPSMYRVKRHVKRAHILNRCEECNEVFYDRAQYTKHVKNHNMDKPIECKVCQKKFDKLKNLSEHIRLQHKQDKEMQKCHICAKEFPNAALLKNHVKTHDKSFKCPDCDKVFSSRFNLKTHSITHSGERNHKCDICDKSFTTKSSLKNHQAVHSDERLFQCEQCAKTFKTNRRLYAHKFSHATEEKFECEICLQKFRVKQYLKYHMTKHSTLKPFQCTICRKRFKHKKSFEKHMNSNKHKIREDEHDCDFCDDTFLTRDLLLDHFAKVHHEENVINSMKDCGEVDGDVINGFENFEDGVDSEGGNIEDGEKSDEDVKVNFNKSSNSIEINDSLKEELDNDTLELRNKVKMENNDNNYIME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -