Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755090.1:18115690-18117348[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7e-05 0.0064 17.4 1.9 3 23 64 84 62 84 0.98

2 14 2.4e-06 0.00022 22.0 1.4 1 23 90 112 90 112 0.99

3 14 4.5e-05 0.0042 18.0 2.8 1 23 118 140 118 140 0.98

4 14 0.013 1.2 10.3 1.6 1 23 146 168 146 168 0.96

5 14 6.5e-05 0.0059 17.5 1.9 1 23 174 197 174 197 0.98

6 14 0.00019 0.018 16.0 0.7 1 23 203 225 203 225 0.98

7 14 3.5e-06 0.00032 21.5 2.7 1 23 231 253 231 253 0.98

8 14 0.00025 0.023 15.7 4.4 1 23 259 281 259 281 0.98

9 14 2.6e-05 0.0024 18.8 1.8 1 23 287 309 287 309 0.98

10 14 9.4e-06 0.00086 20.2 2.6 1 23 316 338 316 338 0.98

11 14 5.8e-05 0.0053 17.7 0.0 1 23 344 366 344 366 0.98

12 14 4.8e-05 0.0044 18.0 0.6 1 23 373 395 373 395 0.98

13 14 2.2e-05 0.002 19.0 1.2 2 23 402 423 401 423 0.97

14 14 9.1e-05 0.0083 17.1 0.2 1 23 429 451 429 451 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7e-05	0.0064	17.4	1.9	3	23	64	84	62	84	0.98
2	14	2.4e-06	0.00022	22.0	1.4	1	23	90	112	90	112	0.99
3	14	4.5e-05	0.0042	18.0	2.8	1	23	118	140	118	140	0.98
4	14	0.013	1.2	10.3	1.6	1	23	146	168	146	168	0.96
5	14	6.5e-05	0.0059	17.5	1.9	1	23	174	197	174	197	0.98
6	14	0.00019	0.018	16.0	0.7	1	23	203	225	203	225	0.98
7	14	3.5e-06	0.00032	21.5	2.7	1	23	231	253	231	253	0.98
8	14	0.00025	0.023	15.7	4.4	1	23	259	281	259	281	0.98
9	14	2.6e-05	0.0024	18.8	1.8	1	23	287	309	287	309	0.98
10	14	9.4e-06	0.00086	20.2	2.6	1	23	316	338	316	338	0.98
11	14	5.8e-05	0.0053	17.7	0.0	1	23	344	366	344	366	0.98
12	14	4.8e-05	0.0044	18.0	0.6	1	23	373	395	373	395	0.98
13	14	2.2e-05	0.002	19.0	1.2	2	23	402	423	401	423	0.97
14	14	9.1e-05	0.0083	17.1	0.2	1	23	429	451	429	451	0.98

Sequence Information

Coding Sequence: ATGGAGTATAATTGCACACGCGTTAATTTGCAGAAGGGAGATGAACCGTTCGAATGTGATAAATTTGAAATCAAAGATGAATTGATTATAGACACTGGCGAAAACTCTCTCGAATGCGATACAAAATTTTCGGAAACAGAAGGTCCAAATGAACACCGGGAAATGCATATTAACGAGTACCCCTTTGGATGTGATGTTTGTAATaagaaattcaagaagaaatgGCGATTAAAAGAACACCTCAGGATGCATACCGGCGAAAAACCGTTCAAATGCCAGATTTGCGGTGCGAAATTTTCGTACAAAAGGAGTTTAAAAGGTCACCAGAGGGTGCATACTGGCGAGAAACCGTTCGAGTGTGACATTTGTCACAAGAAATTCGGCTACAGAGGAAACTTCAAGTATCACCTCATGGTCCATACTGGCGAGAAACCGTTCGAGTGCGAAATTTGTATGAAGAAATTCAGCTGTAAAGGAAATTTGATACAACATCGTGTCGTGCACAATGGAGAAGACtcattcgaatgtgacatttgttACAGAAGGTTCACGCTTGAGAAATATTTGCGGCAACATCGTCGTACGGGACACACTGGGAACAAACCGTTCAGGTGTGATATTTGCTTTAGTGCGTTCAGTTATAGAAATCAGCTGACGGCGCACCTCATGTTGCACAACGGCGACAAGCCCTTCGAGTGCGAAGTTTGCCAAAAGAAATTCACTCAGCGATCCCACTGGGCACAACACCGTAGGGTACACACCGGCGAGCAGCCTTTCGAGTGCGACATCTGCAATAAAAAATTCGACTGCCAATCGCATCTGAACGACCATGTCAATACGCACACTGGTGAGAAGCCGTACGAATGCCGATTTTGCGAGAGAAAATTTGGGACCAGGGCAAGTTTGACGCGACACCTCAAGATGCATTCTGGAGAAAGAGGGAAATTTGAATGTCATATTTGCCAGAAGAAATATGGCTCGAAGAATTATTTGACCGCCCACATCAAAATGCACACCGGCGAAAAAACTTACGCTTGCGATATTTGCGGTAAAATATTGAGTACCGGCGGAAGCCTGGCGGTACACCGTAGGACGCACAGTGCTACTGACAATCGATTCGAATGCTATGTATGTCAGAAGAAATACGTCGCTAAGCAGAATCTGATAAGTCATATTAGAATGCACACTGAAGAAAAGCCATTGGagtgtgatatttgtaatgaaaaattcagacaCGAGGGCAACATGAAAGTACACCGTAGGATCCatgatgacaaaaaattatacgATTGTGAGATTTGTAGTAAGAAATTTGTACTAGAAGAAAGTTTGATAGATCACCGTCGTATGCACAATACTGAAGAATGCTATAATTGTCATCAACAGGTCGTTTCGAAACATTCAGTTGCACATACTGTTACTTACAGTAGTGAACAACATCTAGATCGACAAGAAACCTTTGAATATCATACTTGTGAGACGAATTATTGTTCAACACCGTCTTATCAAAATCAAGACAGCAAAGATTTTGATATGAGAAACTCTATGAAGTTCGAGCCTCCAATAGGAGAAAACTACAACACCGATGtcaaattcaagattgaatatgttgatttacaaatgaaggaaatagatgaaatgaaacaagaacATGTTTAG
Protein Sequence: MEYNCTRVNLQKGDEPFECDKFEIKDELIIDTGENSLECDTKFSETEGPNEHREMHINEYPFGCDVCNKKFKKKWRLKEHLRMHTGEKPFKCQICGAKFSYKRSLKGHQRVHTGEKPFECDICHKKFGYRGNFKYHLMVHTGEKPFECEICMKKFSCKGNLIQHRVVHNGEDSFECDICYRRFTLEKYLRQHRRTGHTGNKPFRCDICFSAFSYRNQLTAHLMLHNGDKPFECEVCQKKFTQRSHWAQHRRVHTGEQPFECDICNKKFDCQSHLNDHVNTHTGEKPYECRFCERKFGTRASLTRHLKMHSGERGKFECHICQKKYGSKNYLTAHIKMHTGEKTYACDICGKILSTGGSLAVHRRTHSATDNRFECYVCQKKYVAKQNLISHIRMHTEEKPLECDICNEKFRHEGNMKVHRRIHDDKKLYDCEICSKKFVLEESLIDHRRMHNTEECYNCHQQVVSKHSVAHTVTYSSEQHLDRQETFEYHTCETNYCSTPSYQNQDSKDFDMRNSMKFEPPIGENYNTDVKFKIEYVDLQMKEIDEMKQEHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -