Gpol000042.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755082.1:416413-430866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.069 6.3 8.0 1.8 2 23 152 173 151 173 0.96 2 16 1.8e-05 0.0016 19.3 4.5 1 23 178 200 178 200 0.98 3 16 0.00031 0.028 15.4 4.2 1 23 206 228 206 228 0.97 4 16 0.0087 0.8 10.8 2.1 1 19 234 252 234 253 0.96 5 16 3.8e-06 0.00035 21.4 0.2 1 23 262 284 262 284 0.98 6 16 0.0032 0.29 12.2 1.2 1 23 525 548 525 548 0.96 7 16 1.3e-05 0.0012 19.8 5.2 1 23 554 576 554 576 0.97 8 16 4.3e-06 0.00039 21.2 4.1 1 23 582 604 582 604 0.98 9 16 1.5e-05 0.0014 19.5 1.0 1 23 610 633 610 633 0.95 10 16 0.0098 0.9 10.7 3.6 1 23 647 669 647 669 0.89 11 16 0.00013 0.011 16.6 4.3 1 23 675 697 675 697 0.98 12 16 2e-06 0.00018 22.3 0.5 1 23 704 726 704 726 0.96 13 16 1.2e-05 0.0011 19.8 1.3 1 23 732 754 732 754 0.98 14 16 3.8e-07 3.5e-05 24.6 0.9 3 23 762 782 760 782 0.96 15 16 1.9e-05 0.0017 19.2 0.1 1 23 788 810 788 810 0.99 16 16 0.052 4.8 8.4 0.7 1 23 815 838 815 838 0.97
Sequence Information
- Coding Sequence
- ATGGAGAATCTAAGTCTGAATCAGATTTGTCGGACATGCAAGTGTGTGGCGCCCCACATGCGATCTCTTTTTGAGGGATACGAAAATCCACATCAGAGTCCCCGTATTGACGAGATGCTAATGGCTTGTGCCTCTGTTCAGGTGACATGCGGAGACGGATTGCCGACACTTATGTGCCAAATATGTGTCGAGCATCTCAAAAATGCCTACCTTTTCAAGCGGCAGGCAGAAAAAGTAGATGTAGGCTTAAGGGAATATGCAAAGACGATCAAAGTTAACGAAATCAAGCAAGAACTCCAGAACTCGGAGTTTATGGAATCTCTGAACACACTGAACAACCTGCTGAATGAAGAGTCAACTTCGAAAGATGAGGGGGCTGAAGGGCAGCCCCAACAAGCTCCCAAAATCGAGACAGACTACATTCAGTTCATGGACAACAATCAGATGCTGCTTACATGTCGCGAATGCGCCAAAATTTTCACCACTTTGGAGGGGCTGCGTTGCCACAAGCGCATCCACTCGGGCGGCATGTACAAGTGCAAGCAGTGCGACAAAGAGTACACTCGTCTGAATCACCTGCAGCGGCACGAGCAGTCGCACAGCCGCAGGAAGGTGCACGTCTGCAGGATATGCAACAAGACGTTGACGAGGATGGAACATCTCAAGCGGCATCTGGTGACTCATCTGCGCGAGAAGCCGTTCTCGTGCAAGACGTGCAACAGGGGCTTCAACAGGATCGAGCATCTGCACAATCACGCGCCGAGGTGCAAAGgCGACACCGTGTACCCGTGCGACGTGTGCAACAAGGCGTTCAACCGCGAGGACAGCCTCGAGGTGCACAAGAAGATGCACGACAACAAGGCGCCCAAATTGCCGACCATCGACAGTCTCGACAACATCGAAGATCATTACTATCAGATCGACGTCGACGACGACGCGTTCGACGAGGACCGCGCCGGCGACGTCGACGACGACGATCAGGACGTCGTCGACGACTGCTTCGAGCCGCAGGTGGAGGTCACCGAGACGGTCGAAGAGGACGAGAAGGTTCAGATGGACGACATTGCCGTGAACAAGCCGTTGGAGGAGAGCGACGGCGACGAGGTCGACGACGCGATGGGCGACAGCGACGACGAAGCCGACGCCGCGAAGAGCTTGGCCGGCGACGAGGACGACGACTTCGTCGAGCGCGACGAGgacgaggaggaggaggaggagctGGAGGAGGGCGAGGTCGACAGGAAGGACGTCAAGGTGGAGGAGAGCGGACTGACAGAGGTCCACGGCGAGGATGTCGACGAGCTGGTCAGGGAGGCGATAGCCGAGGTGGAAGCGGCCGAGGAGGAATCGGACAAAGACAGCTCCGACTCGGACTACCGGCCGAAGAAGCCTGCGCCGGGCAAGGGCGGCAAGCGGGGGCGCGGCCGCCCCAGGAAGAACCCCGAGGGGGCGGGGCCGCCGGCCAAGAAGCCGAAAAAGCCGAAGGTGCCGGGCAGGGGACGGGGCAGGCCGCCGTCGGCGAAGAAGGCGGCGAAGAGGGAGCGCGAGCAGGAGGAGGAGGAGTTCGGCGAGTTCCCCTGCCCGATTTGCGGCGAGATGTGCCACTCGCTGATGCAGTTGGACAGGCACGCGAGGCTCAAGCACGAGGGCATGAAGGTCCACAAGTGCAACGTGTGCAACAAAGAGTTCTCGCGCGCCAACCACCTGAAACGCCACGTGACCTCGCACTCGACCATCAAGCCGTTCCGGTGCGGCGTGTGCACCAAGAGCTTCAACAGGCGCGACCATCTCAACCAACACCAAAAGTTGCATCAGCGCCACAACGATTTCGAGTGCGACGTCTGTCAAAAGCCGTTCAACCGGGCCGACCATCTGGCCAAGCACAAGGCCTCGAAGCACGGTATCGGGGAGAAGATATGCATCATGGGCGAGAAGAAGTACGAGTGCCCTTTGTGCCACAAGTGCTTCACGACGGAAAAGTACCGCGACGTGCACGTGAGCGGCCACAACGGGCAGAAGGAGTACTCGTGCAAGGTGTGCGAGAAGACGTTCCTGTCGAAGTCGCACCTCACCGAGCACATGAAGTTCCACAACGAGCACTCGAAGAAGTTCCTGTGCTCGGAGTGCGGCCAGCGGTTCATCAGGAACGACTATCTGGTGATCCACATGCGGCGGCATCGCGGCGAGAAGCCGTTCAAGTGCAAGTTTTGCGGCAAAGGGTTCCCGCGCACCACCGATCTCACCGTGCACGAGCGCTATCACACCGGCGAGAAGACGCATCTGTGCACGATTTGCGGCAGGGGATTCGGCAGGGCGTACAACTTGACGGTACACATGCGAACCCACACCGGCGAAAAACCGTACCAGTGCACGTATTGCGACGCCGCTTTCGCGCAGGGTAACGACTTGAAGGCGCACGTGCGACGCCATACAGGAGAACGATTCCAGTGCGAACTTTGCACCGAAAGCTTCCTCATGGGCTACCTTCTGACGCAGCACAAAAGGACCGTGCACGGGCTGAACGTGGTGAGCAACATCCGTCGATTGCAGCCCGTCCACAAGACGGAGAACCCCGACGACCCGCCGCCCATCACGATCCCGCTGCCGAAGCCCGTCATCCCCGATAACGTCGTGTTCAACGCGCTGCACGCCAACGCCGCCATGCACGCCAACGCCTTCCACGCCCAGCTGGCCGTCGCCCAACTGCATCTGGCTAGGGAATAA
- Protein Sequence
- MENLSLNQICRTCKCVAPHMRSLFEGYENPHQSPRIDEMLMACASVQVTCGDGLPTLMCQICVEHLKNAYLFKRQAEKVDVGLREYAKTIKVNEIKQELQNSEFMESLNTLNNLLNEESTSKDEGAEGQPQQAPKIETDYIQFMDNNQMLLTCRECAKIFTTLEGLRCHKRIHSGGMYKCKQCDKEYTRLNHLQRHEQSHSRRKVHVCRICNKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDVCNKAFNREDSLEVHKKMHDNKAPKLPTIDSLDNIEDHYYQIDVDDDAFDEDRAGDVDDDDQDVVDDCFEPQVEVTETVEEDEKVQMDDIAVNKPLEESDGDEVDDAMGDSDDEADAAKSLAGDEDDDFVERDEDEEEEEELEEGEVDRKDVKVEESGLTEVHGEDVDELVREAIAEVEAAEEESDKDSSDSDYRPKKPAPGKGGKRGRGRPRKNPEGAGPPAKKPKKPKVPGRGRGRPPSAKKAAKREREQEEEEFGEFPCPICGEMCHSLMQLDRHARLKHEGMKVHKCNVCNKEFSRANHLKRHVTSHSTIKPFRCGVCTKSFNRRDHLNQHQKLHQRHNDFECDVCQKPFNRADHLAKHKASKHGIGEKICIMGEKKYECPLCHKCFTTEKYRDVHVSGHNGQKEYSCKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKTENPDDPPPITIPLPKPVIPDNVVFNALHANAAMHANAFHAQLAVAQLHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -